ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63h18 |
|---|---|
| Clone Library Name | barley_pub |
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 189 bits (479), Expect = 3e-48 Identities = 93/93 (100%), Positives = 93/93 (100%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE Sbjct: 333 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 392 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 158 NVKRVQLADKYLSEAALGQANDDAMKTGAFYGK Sbjct: 393 NVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 164 bits (416), Expect = 7e-41 Identities = 77/93 (82%), Positives = 86/93 (92%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKWVG G+ENI KRLVNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+ Sbjct: 336 GALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQD 395 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 158 NVKRVQLAD Y+S+AALG AN DAMKTG+FYGK Sbjct: 396 NVKRVQLADTYMSQAALGDANQDAMKTGSFYGK 428
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 162 bits (410), Expect = 3e-40 Identities = 78/92 (84%), Positives = 86/92 (93%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKWV + GVENI KRLVNSREGPP F+QPKMTIEKL+EYG+MLV+EQE Sbjct: 336 GALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQE 395 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFYG 161 NVKRVQLA++YLSEAALG AN DAMKTG+FYG Sbjct: 396 NVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 161 bits (408), Expect = 6e-40 Identities = 75/91 (82%), Positives = 88/91 (96%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVR+WV E GVENI+++LVNS+EGPPTF+QPK+TIEKL+EYGHMLV EQE Sbjct: 342 GALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQE 401 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFY 164 NVKRVQLADKYL+EAALG+AN+DAMKTG+F+ Sbjct: 402 NVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 160 bits (405), Expect = 1e-39 Identities = 76/92 (82%), Positives = 85/92 (92%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKW+ +GV++I K+LVNS+EGPPTF+QPKMTIEKL+EYG+MLVQEQE Sbjct: 346 GALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQE 405 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFYG 161 NVKRVQLADKYLSEAALG AN DAM TG FYG Sbjct: 406 NVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 152 bits (385), Expect = 3e-37 Identities = 71/90 (78%), Positives = 83/90 (92%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKWV E+GV+ I K+LVNS+EGPPTF+QPKMTI+KL++YG+MLV+EQE Sbjct: 346 GALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQE 405 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAF 167 NVKRVQLADKY+SEAALG AN DA+K G F Sbjct: 406 NVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 152 bits (384), Expect = 3e-37 Identities = 72/92 (78%), Positives = 83/92 (90%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVY DEVRKWV E+GV+ I K+LVNS+EGPP+F+QPKMTI+KL+ YG MLVQEQE Sbjct: 346 GALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQE 405 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFYG 161 NVKRVQLADKY+SEAALG AN+DA+K G FYG Sbjct: 406 NVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 150 bits (378), Expect = 2e-36 Identities = 68/91 (74%), Positives = 85/91 (93%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKW+ +GV+ K+LVNS+EGPPTFDQPKM+++KL++YG+MLVQEQE Sbjct: 348 GALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQE 407 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFY 164 NVKRVQLADKYL+EAALG AN+DA+K+G+F+ Sbjct: 408 NVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 147 bits (372), Expect = 9e-36 Identities = 67/91 (73%), Positives = 84/91 (92%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKW+ +GV+++ K+LVNS+EGPPTFDQPKMT++KL+ Y MLVQEQE Sbjct: 350 GALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQE 409 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFY 164 NVKRVQLAD+YL+EAALG AN+DA+K+G+F+ Sbjct: 410 NVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 147 bits (371), Expect = 1e-35 Identities = 67/93 (72%), Positives = 82/93 (88%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVY DEVRKWV +GV+N+ K+LVNS++GPP F+QP+MT++KLMEYG+MLVQEQE Sbjct: 344 GALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQE 403 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 158 NVKRVQLAD+Y+S AALG AN DA+ G F+GK Sbjct: 404 NVKRVQLADQYMSSAALGDANKDAIDRGTFFGK 436
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 145 bits (367), Expect = 3e-35 Identities = 72/93 (77%), Positives = 80/93 (86%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRK+V +GVE I KRLVNSREGPP F+QP+MT EKLMEYG+MLV EQE Sbjct: 346 GALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQE 405 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 158 NVKRVQLA+ YLS+AALG AN DA+ G FYGK Sbjct: 406 NVKRVQLAETYLSQAALGDANADAIGRGTFYGK 438
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 144 bits (364), Expect = 7e-35 Identities = 69/91 (75%), Positives = 79/91 (86%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKWV G+E I +L+NS +GPPTF+QPKMTIEKL+EYG+MLVQEQE Sbjct: 350 GALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQE 409 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAFY 164 NVKRVQLADKYL EAALG AN DA+ G+F+ Sbjct: 410 NVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 140 bits (354), Expect = 1e-33 Identities = 67/88 (76%), Positives = 78/88 (88%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKWV G+E I ++L+NSR+GPPTF+QPKMT+EKL+EYG+MLVQEQE Sbjct: 345 GALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQE 404 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTG 173 NVKRVQLA+ YL EAALG AN DA+ TG Sbjct: 405 NVKRVQLAETYLKEAALGDANADAINTG 432
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 139 bits (350), Expect = 3e-33 Identities = 67/90 (74%), Positives = 77/90 (85%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKWV G+E I +L+NS +GPPTF+QPKMT+EKL+EYG+MLVQEQE Sbjct: 350 GALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQE 409 Query: 256 NVKRVQLADKYLSEAALGQANDDAMKTGAF 167 NVKRVQLA+ YL EAALG AN DA+ TG F Sbjct: 410 NVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 112 bits (279), Expect = 5e-25 Identities = 53/67 (79%), Positives = 59/67 (88%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDDEVRKW +GVE I + LVNS+E PPTFDQPKMTIEKL+EYG+MLV EQE Sbjct: 343 GALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQE 402 Query: 256 NVKRVQL 236 NVKRV+L Sbjct: 403 NVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 82.0 bits (201), Expect = 6e-16 Identities = 43/77 (55%), Positives = 55/77 (71%) Frame = -3 Query: 436 GALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQE 257 GALRARVYDD VR+W+ + GV+ I ++LVN+R+ + M + L++YG LV EQE Sbjct: 319 GALRARVYDDMVRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQE 377 Query: 256 NVKRVQLADKYLSEAAL 206 NVKRVQLAD YLS A L Sbjct: 378 NVKRVQLADAYLSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 75.5 bits (184), Expect = 5e-14 Identities = 31/70 (44%), Positives = 51/70 (72%) Frame = -3 Query: 433 ALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQEN 254 ALR+R+YD+++R ++ ++G EN+S R+VNS EGPP F +P T+ L+E + +V EQ+ Sbjct: 220 ALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKR 279 Query: 253 VKRVQLADKY 224 ++ QL D+Y Sbjct: 280 IETSQLVDEY 289
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 414 Score = 68.2 bits (165), Expect = 9e-12 Identities = 30/70 (42%), Positives = 49/70 (70%) Frame = -3 Query: 433 ALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQEN 254 ALR+R+YD ++R ++ ++G E IS R+VNS E PP F +P ++ L+E G++++ EQ+ Sbjct: 220 ALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQR 279 Query: 253 VKRVQLADKY 224 V QL D+Y Sbjct: 280 VDNSQLVDEY 289
>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast (RuBisCO activase) (RA) (Fragments) Length = 32 Score = 34.7 bits (78), Expect = 0.11 Identities = 14/16 (87%), Positives = 15/16 (93%) Frame = -3 Query: 343 REGPPTFDQPKMTIEK 296 REGPPTF+QP MTIEK Sbjct: 17 REGPPTFEQPAMTIEK 32
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 32.7 bits (73), Expect = 0.40 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = -2 Query: 362 QAPRQLEGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQ 219 QAPRQ + A RP G RP A PG R++ RR+ P+ Sbjct: 250 QAPRQEDSRPARARPGPPTRGRRRGRRP-AAPGPASRRSARLRRRQPR 296
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 32.7 bits (73), Expect = 0.40 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = -2 Query: 362 QAPRQLEGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQ 219 QAPRQ + A RP G RP A PG R++ RR+ P+ Sbjct: 250 QAPRQEDSRPARARPGPPTRGRRRGRRP-AAPGPASRRSARLRRRQPR 296
>DNAA_STRAW (Q82FD8) Chromosomal replication initiator protein dnaA| Length = 653 Score = 30.4 bits (67), Expect = 2.0 Identities = 19/59 (32%), Positives = 24/59 (40%) Frame = -2 Query: 353 RQLEGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGARPSQRRRHED 177 R EG + R DDHR+ H R GPG + P RG P+ R + D Sbjct: 125 RGREGYEGYGRHRADDHRQGHNDRHQGGPG---------DQLPPSRGDQLPTARPAYPD 174
>41_CANFA (Q6Q7P4) Protein 4.1 (Band 4.1) (P4.1) (4.1R)| Length = 810 Score = 28.5 bits (62), Expect = 7.6 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 21/107 (19%) Frame = -2 Query: 335 AAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGAR---PSQR--RRHED-- 177 +A +PAQ++HRE G G E + + P+ R SQ+ RRH + Sbjct: 153 SAETQPAQEEHREDPDFETKEGGGLEECSKIEVKEESPESKAERELKASQKSIRRHRNMH 212 Query: 176 -----------RCLL-RQVEGPTLLKMHACTIYML--DYFGPEIHSN 78 C++ + +G LLK + +L DYFG I N Sbjct: 213 CKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDN 259
>ODO1_STAS1 (Q49XM5) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Frame = -3 Query: 388 GEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQ-------EQENVKRVQLAD 230 GE + ++ N +G T + I+ + +YGH+L ++ENV ++ + D Sbjct: 49 GEANIATNTEGQSNVTKGDSTIKRVMRLIDNIRQYGHLLADIYPVNRPQRENVPKLNMED 108 Query: 229 KYLSEAAL 206 L + L Sbjct: 109 FNLDQETL 116
>H1X_HUMAN (Q92522) Histone H1x| Length = 213 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +2 Query: 68 ESKSLSGFRVQNSPTYI*CMHAS*VE*DLLLAVEGTGLHG 187 E+K + F QN TY+ + V+ D LL V+GTG +G Sbjct: 73 EAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANG 112
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -2 Query: 290 GVRPHAGPGAGERQACAARRQVPQRGGARPSQRRRHEDRCLLRQVEGP 147 G +P GPG G A + P RGG P R+H + +GP Sbjct: 207 GPKPGGGPGMG---APGGHPKPPHRGGGEPRGGRQHHAPYHQQHHQGP 251 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,433,555 Number of Sequences: 219361 Number of extensions: 1000280 Number of successful extensions: 3361 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3353 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
