ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63h09 |
|---|---|
| Clone Library Name | barley_pub |
>KPPR_WHEAT (P26302) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 404 Score = 128 bits (322), Expect = 6e-30 Identities = 63/63 (100%), Positives = 63/63 (100%) Frame = -3 Query: 455 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII 276 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII Sbjct: 332 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII 391 Query: 275 AER 267 AER Sbjct: 392 AER 394
>KPPR_ARATH (P25697) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 395 Score = 124 bits (312), Expect = 9e-29 Identities = 60/63 (95%), Positives = 62/63 (98%) Frame = -3 Query: 455 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII 276 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQ+I Sbjct: 324 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLI 383 Query: 275 AER 267 A + Sbjct: 384 ANK 386
>KPPR_MESCR (P27774) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 397 Score = 121 bits (303), Expect = 1e-27 Identities = 58/63 (92%), Positives = 61/63 (96%) Frame = -3 Query: 455 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII 276 DRLDELIYVESHLSNLSTKFYGEVTQQMLKH DFPGSNNGTGLFQTIVGLKIRDL+EQ+I Sbjct: 325 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQTIVGLKIRDLFEQLI 384 Query: 275 AER 267 A + Sbjct: 385 ASK 387
>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 402 Score = 118 bits (295), Expect = 8e-27 Identities = 55/63 (87%), Positives = 60/63 (95%) Frame = -3 Query: 455 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII 276 DRLDELIYVESHLSNLSTKFYGEVTQQMLKH +FPGSNNGTG FQTI+GLKIRDL+EQ++ Sbjct: 330 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQTIIGLKIRDLFEQLV 389 Query: 275 AER 267 A R Sbjct: 390 ASR 392
>KPPR_CHLRE (P19824) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 375 Score = 104 bits (260), Expect = 9e-23 Identities = 47/60 (78%), Positives = 57/60 (95%) Frame = -3 Query: 455 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII 276 D+L+ELIYVESHLSN S KFYGE+TQQMLK++ FPGSNNGTGLFQTIVGLK+R++YE+I+ Sbjct: 309 DKLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQTIVGLKVREVYERIV 368
>KPPR_SYNY3 (P37101) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) Length = 332 Score = 89.7 bits (221), Expect = 3e-18 Identities = 37/62 (59%), Positives = 53/62 (85%) Frame = -3 Query: 455 DRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII 276 + L+E++YVE+HLS TK+YGE+T+ +LKH D+PG++NGTGLFQ +VGLK+R +YEQ+ Sbjct: 264 ENLEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVLVGLKMRKVYEQLT 323 Query: 275 AE 270 AE Sbjct: 324 AE 325
>CARB_SULAC (Q4J8E8) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1052 Score = 32.3 bits (72), Expect = 0.58 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +1 Query: 64 HGEDFREVQNAGFHEFCSELSTVF*L*YIQTSHKKREDAHSH*VGDEMIHELEFGAHQTF 243 +G V+ AG H + +S F +T HK +E HS + E+ + F F Sbjct: 769 YGVVLEHVEEAGVHSGDATISIPFKKLSPETVHKMKESIHS--ISRELNIKGPFNVQ--F 824 Query: 244 AASAGTPALSAM-ICS*RSLIFSPTIVWKRPVPLLLPG 354 GTP + M + + RS+ FS +V K + L L G Sbjct: 825 VVKNGTPYIIEMNLRASRSMPFSSKVVGKNIIDLALTG 862
>PALFB_EUGGR (P84737) Photoactivated adenylate cyclase alpha-subunit-like| protein FB Length = 1019 Score = 30.4 bits (67), Expect = 2.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 255 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 362 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVLLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_EUGGR (Q8S9F2) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 2.9 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 255 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 362 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_ASTLO (Q76L34) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 2.9 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 255 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 362 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSERCSLTEVWTIC 640
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like| protein ST- Length = 1019 Score = 30.0 bits (66), Expect = 2.9 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 255 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 362 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PAL1F_EUGGR (P84738) Photoactivated adenylate cyclase alpha-subunit-like| protein 1224-5/1F Length = 1019 Score = 30.0 bits (66), Expect = 2.9 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +3 Query: 255 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 362 RN P+S ++ + + + S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATAISSFTPLSEKCSLTEVWTIC 640
>MA2C1_HUMAN (Q9NTJ4) Alpha-mannosidase 2C1 (EC 3.2.1.24) (Alpha-D-mannoside| mannohydrolase) (Mannosidase alpha class 2C member 1) (Alpha mannosidase 6A8B) Length = 1040 Score = 29.3 bits (64), Expect = 4.9 Identities = 19/65 (29%), Positives = 26/65 (40%) Frame = +1 Query: 199 DEMIHELEFGAHQTFAASAGTPALSAMICS*RSLIFSPTIVWKRPVPLLLPGKSACFSIC 378 + M H + +H SA AL A L+ T+ WKR + LP S+ Sbjct: 591 EAMCHYEDIRSHGNTLLSAAAAALCAGEPGPEGLLIVNTLPWKRIEVMALPKPGGAHSLA 650 Query: 379 CVTSP 393 VT P Sbjct: 651 LVTVP 655
>CALC3_ONCKI (P01265) Calcitonin-3| Length = 32 Score = 28.9 bits (63), Expect = 6.4 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 416 SNLSTKFYGEVTQQMLKHADFPGSNNGTGL 327 SNLST G+++Q + K FP +N G G+ Sbjct: 2 SNLSTCMLGKLSQDLHKLQTFPRTNTGAGV 31
>HHP2_SCHPO (P40236) Casein kinase I homolog hhp2 (EC 2.7.11.1)| Length = 400 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/54 (37%), Positives = 29/54 (53%) Frame = -2 Query: 201 ITNSMRMSILTFLVTSLNILQLEDGRKFTAELMKTCILNFSKILSMMRVSYVSS 40 +TNS ++ L SL L GRKFT +KT +L +++S R+ YV S Sbjct: 76 VTNSYNAMVMDLLGPSLEDLFCYCGRKFT---LKTVLLLADQLIS--RIEYVHS 124
>AGM1_HUMAN (O95394) Phosphoacetylglucosamine mutase (EC 5.4.2.3) (PAGM)| (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) (Phosphoglucomutase 3) Length = 542 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -3 Query: 449 LDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQI 279 L+E++ V + + K Q+ F + +GT LF T V +KI+ EQ+ Sbjct: 338 LEEVMKVPVYCTKTGVKHLHHKAQEFDIGVYFEANGHGTALFSTAVEMKIKQSAEQL 394
>RPTN_MOUSE (P97347) Repetin| Length = 1130 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +1 Query: 7 NMGEDVH*NVLRGDIRDSHHGEDFREVQNAGFHEFCSE 120 + G+ H + +++ SHHG+ R+ QN+ +H S+ Sbjct: 564 SQGQSFHFDQAGREVQGSHHGQTDRQSQNSNWHRTDSQ 601
>ATPF_MESVI (Q9MUT1) ATP synthase B chain (EC 3.6.3.14) (ATPase subunit I)| Length = 186 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = -2 Query: 177 ILTFLVTSLNILQLEDGRKFTAELMKTCILNFSKILSMMRVS 52 ILT + T L+ + L +G F ++ +T ILN + +L ++ S Sbjct: 4 ILTNIFTILSRMSLAEGFGFNTDIFETNILNLAVVLGILLTS 45
>KPPR_PINPS (P81664) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) (Fragments) Length = 35 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = -3 Query: 401 KFYGEVTQQMLK 366 KFYGEVTQQMLK Sbjct: 12 KFYGEVTQQMLK 23
>CALC2_ONCNE (P69068) Calcitonin-2| Length = 32 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 416 SNLSTKFYGEVTQQMLKHADFPGSNNGTGL 327 SNLST G+++Q + K FP +N G G+ Sbjct: 2 SNLSTCVLGKLSQDLHKLQTFPRTNTGAGV 31
>CALC2_ONCKE (P69067) Calcitonin-2| Length = 32 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 416 SNLSTKFYGEVTQQMLKHADFPGSNNGTGL 327 SNLST G+++Q + K FP +N G G+ Sbjct: 2 SNLSTCVLGKLSQDLHKLQTFPRTNTGAGV 31
>CALC2_ONCGO (P69165) Calcitonin-2| Length = 32 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 416 SNLSTKFYGEVTQQMLKHADFPGSNNGTGL 327 SNLST G+++Q + K FP +N G G+ Sbjct: 2 SNLSTCVLGKLSQDLHKLQTFPRTNTGAGV 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,345,284 Number of Sequences: 219361 Number of extensions: 1083037 Number of successful extensions: 3062 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2987 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3061 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
