ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLC2B_HUMAN (Q8NEV8) Slp homolog lacking C2 domains b (Exophilin-5) 32 0.48
2GALT_HUMAN (P07902) Galactose-1-phosphate uridylyltransferase (E... 29 3.1
3SPRT_PHOLL (Q7N118) Protein sprT 28 4.1
4GALT_RAT (P43424) Galactose-1-phosphate uridylyltransferase (EC ... 28 4.1
5GALT_MOUSE (Q03249) Galactose-1-phosphate uridylyltransferase (E... 28 4.1
6GALT_DROME (Q9VMA2) Probable galactose-1-phosphate uridylyltrans... 28 5.3
7YA93_SCHPO (Q09782) Hypothetical protein C13G6.03 in chromosome I 28 5.3
8RS2_SPIPL (P34831) 30S ribosomal protein S2 28 7.0
9PLXA2_HUMAN (O75051) Plexin-A2 precursor (Semaphorin receptor OCT) 27 9.1
10PLXA2_MOUSE (P70207) Plexin-A2 precursor (Plexin-2) (Plex 2) 27 9.1

>SLC2B_HUMAN (Q8NEV8) Slp homolog lacking C2 domains b (Exophilin-5)|
          Length = 1989

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 122  SLGLEQELDTRGENRKNKYVQQDEENCNRENPP 220
            SLG  +E D  G+N+KN+++    EN  R + P
Sbjct: 917  SLGEREEKDNAGKNQKNQFIVSHSENQERNDSP 949



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>GALT_HUMAN (P07902) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)|
           (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 379

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -1

Query: 311 PESRTVVCAFKHGVKCALSASLYMILVIENREGFRDCSFPHLVAHIYFYGFLP 153
           PE R VV A+   V   L A    + + EN+     CS PH    ++   FLP
Sbjct: 145 PEIRAVVDAWA-SVTEELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLP 196



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>SPRT_PHOLL (Q7N118) Protein sprT|
          Length = 194

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 239 ILVIENREGFRDCSFPHLVAHIYFYGFLPWCP 144
           +L+IEN++ F D   PH +AH+  Y +    P
Sbjct: 62  VLLIENQQAFIDEVVPHELAHLLVYRYFGKVP 93



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>GALT_RAT (P43424) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)|
           (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 379

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 311 PESRTVVCAFKHGVKCALSASLYMILVIENREGFRDCSFPHLVAHIYFYGFLP 153
           PE R V+ A+   V   L A    + + EN+     CS PH    ++   FLP
Sbjct: 145 PEIRAVIDAWA-SVTEELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASNFLP 196



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>GALT_MOUSE (Q03249) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)|
           (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 379

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 311 PESRTVVCAFKHGVKCALSASLYMILVIENREGFRDCSFPHLVAHIYFYGFLP 153
           PE R V+ A+   V   L A    + + EN+     CS PH    ++   FLP
Sbjct: 145 PEIRAVIDAWA-SVTEELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLP 196



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>GALT_DROME (Q9VMA2) Probable galactose-1-phosphate uridylyltransferase (EC|
           2.7.7.12) (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 350

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 260 LSASLYMILVIENREGFRDCSFPHLVAHIYFYGFLPWCPAL 138
           LSA    + + EN+     CS PH    I+   FLP  P L
Sbjct: 140 LSAKYAWVQIFENKGAAMGCSNPHPHCQIWSCSFLPTEPQL 180



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>YA93_SCHPO (Q09782) Hypothetical protein C13G6.03 in chromosome I|
          Length = 758

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -2

Query: 343 ARNVLLFVPNIRRAALWCVPSNTASSVLSLQVYI*Y*SLKIGRVFAIAVFLILLHIFIFT 164
           A  +LLF      A  WC+         S++ +    S+ +     I+ F++  H+F+++
Sbjct: 669 AVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISL-TFLCISCFIMRHHLFVWS 727

Query: 163 VFSP 152
           VFSP
Sbjct: 728 VFSP 731



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>RS2_SPIPL (P34831) 30S ribosomal protein S2|
          Length = 251

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 135 SKSWTPGEKTVKINMCNKMRKTAIAKTLPIFND 233
           ++ W P  K       NK+    + KTLP+FND
Sbjct: 20  TRFWNPKMKPYIFGARNKIHIVNLEKTLPLFND 52



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>PLXA2_HUMAN (O75051) Plexin-A2 precursor (Semaphorin receptor OCT)|
          Length = 1909

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -3

Query: 369 RVCVEKQERQETSFFSYLISGEPHCGVC----LQTRRQVC 262
           RV VE  E Q T+    L SG+PHCG C    + +RR  C
Sbjct: 520 RVPVESCE-QYTTCGECLSSGDPHCGWCALHNMCSRRDKC 558



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>PLXA2_MOUSE (P70207) Plexin-A2 precursor (Plexin-2) (Plex 2)|
          Length = 1884

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -3

Query: 369 RVCVEKQERQETSFFSYLISGEPHCGVC----LQTRRQVC 262
           RV VE  E Q T+    L SG+PHCG C    + +RR  C
Sbjct: 495 RVPVESCE-QYTTCGECLSSGDPHCGWCALHNMCSRRDKC 533


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,771,769
Number of Sequences: 219361
Number of extensions: 969703
Number of successful extensions: 2669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2668
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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