>RBCMT_TOBAC (P94026) Ribulose-1,5 bisphosphate carboxylase/oxygenase large|
           subunit N-methyltransferase, chloroplast precursor (EC
           2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine
           N-methyltransferase) (RuBisCO methyltransferase)
           (RuBisco LSMT) (rbcM
          Length = 491

 Score =  232 bits (592), Expect = 4e-61
 Identities = 113/166 (68%), Positives = 135/166 (81%)
 Frame = -3

Query: 522 SDPFYEDKLDIAELNGMGETAYFDVVLGESLPPQMITYLRLLCLGGTDAFLLEALFRNKV 343
           SD FY DKLDIAE NG+GETAYFD+ +G+SLPP MI YLRL+ LGGTDAFLLE++FRN V
Sbjct: 324 SDEFYGDKLDIAETNGIGETAYFDIKIGQSLPPTMIPYLRLVALGGTDAFLLESIFRNSV 383

Query: 342 WEHLELPVSRDNEESICQVIQNACKSALAAYHTTIXXXXXXXXXXXLQSRHQIAVEVRVG 163
           W HL LPVSR NEE IC+V+++ACKSAL+ YHTTI           L +R QIAV +R+G
Sbjct: 384 WGHLGLPVSRANEELICKVVRDACKSALSGYHTTIEEDEKLMEEGNLSTRLQIAVGIRLG 443

Query: 162 EKKVLEQINDIFKEREQELDDLEYYQERRLKDLGFIGDNGDIIFWE 25
           EK+VL+QI+DIF+ERE ELD+LEYY ERRLKDLG +G+ GDIIFWE
Sbjct: 444 EKRVLKQIDDIFRERELELDELEYYGERRLKDLGLVGEQGDIIFWE 489

>RBCMT_ARATH (Q9XI84) Probable ribulose-1,5 bisphosphate carboxylase/oxygenase|
           large subunit N-methyltransferase, chloroplast precursor
           (EC 2.1.1.127) ([Ribulose-bisphosphate
           carboxylase]-lysine N-methyltransferase) (RuBisCO
           methyltransferase) (RuBisco LS
          Length = 482

 Score =  216 bits (549), Expect = 4e-56
 Identities = 103/167 (61%), Positives = 132/167 (79%)
 Frame = -3

Query: 522 SDPFYEDKLDIAELNGMGETAYFDVVLGESLPPQMITYLRLLCLGGTDAFLLEALFRNKV 343
           SDPF+ DKLDIAE N MGET YFD+V G++LP  M+ YLRL+ LGG DAFLLE++F N +
Sbjct: 315 SDPFFGDKLDIAESNKMGETGYFDIVDGQTLPAGMLQYLRLVALGGPDAFLLESIFNNTI 374

Query: 342 WEHLELPVSRDNEESICQVIQNACKSALAAYHTTIXXXXXXXXXXXLQSRHQIAVEVRVG 163
           W HLELPVSR NEE IC+V+++ACKSAL+ + TTI           L+ R ++A+++R+G
Sbjct: 375 WGHLELPVSRTNEELICRVVRDACKSALSGFDTTIEEDEKLLDKGKLEPRLEMALKIRIG 434

Query: 162 EKKVLEQINDIFKEREQELDDLEYYQERRLKDLGFIGDNGDIIFWES 22
           EK+VL+QI+ IFK+RE ELD LEYYQERRLKDLG +G+ GDIIFWE+
Sbjct: 435 EKRVLQQIDQIFKDRELELDILEYYQERRLKDLGLVGEQGDIIFWET 481

>RBCMT_PEA (Q43088) Ribulose-1,5 bisphosphate carboxylase/oxygenase large|
           subunit N-methyltransferase, chloroplast precursor (EC
           2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine
           N-methyltransferase) (RuBisCO methyltransferase)
           (RuBisco LSMT) (rbcMT)
          Length = 489

 Score =  203 bits (517), Expect = 2e-52
 Identities = 100/163 (61%), Positives = 124/163 (76%)
 Frame = -3

Query: 522 SDPFYEDKLDIAELNGMGETAYFDVVLGESLPPQMITYLRLLCLGGTDAFLLEALFRNKV 343
           SDPF++DKLD+AE NG  +TAYFD+    +LPP ++ YLRL+ LGGTDAFLLE+LFR+ +
Sbjct: 321 SDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTI 380

Query: 342 WEHLELPVSRDNEESICQVIQNACKSALAAYHTTIXXXXXXXXXXXLQSRHQIAVEVRVG 163
           W HLEL VSRDNEE +C+ ++ ACKSALA YHTTI           L SR  IAV +R G
Sbjct: 381 WGHLELSVSRDNEELLCKAVREACKSALAGYHTTI-EQDRELKEGNLDSRLAIAVGIREG 439

Query: 162 EKKVLEQINDIFKEREQELDDLEYYQERRLKDLGFIGDNGDII 34
           EK VL+QI+ IF+++E ELD LEYYQERRLKDLG  G+NGDI+
Sbjct: 440 EKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDIL 482

>EFTU_MYCHO (P22679) Elongation factor Tu (EF-Tu)|
          Length = 397

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = -3

Query: 201 QSRHQIAVEVRVGEKKVLEQIN--DIFK--EREQELDDLEYYQERRLKDLGFIGDNGDII 34
           Q+R  I +  +VG  K++  +N  D+FK  ERE+ +  +E      L + GF GDN  II
Sbjct: 115 QTREHILLARQVGVPKIVVFLNKIDMFKDDEREEMVGLVEMDVRSLLSEYGFDGDNAPII 174

>PANF_ECOLI (P16256) Sodium/pantothenate symporter (Pantothenate permease)|
          Length = 483

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 465 TAYFDVVLGESL------PPQMITYLRLLCLGGTDAFLLEALFRNKVWE 337
           +A   +VLG  L      PP+MI +L LL  GG +A  L  L     WE
Sbjct: 370 SAVITLVLGALLLLAAWKPPEMIIWLNLLAFGGLEAVFLWPLVLGLYWE 418

>RNT2_HUMAN (O00584) Ribonuclease T2 precursor (EC 3.1.27.-) (Ribonuclease 6)|
          Length = 256

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -3

Query: 408 LRLLCLGGTDAFLLEALFRNKVWEHLELPVSRDNEESICQVIQNACK 268
           L LLCLGG D  L +    N  W+  +L + +   E++C+ IQN C+
Sbjct: 16  LALLCLGGADKRLRD----NHEWK--KLIMVQHWPETVCEKIQNDCR 56

>PALB_EMENI (Q00204) Calpain-like protease palB (EC 3.4.22.-) (Cysteine|
           protease palB)
          Length = 847

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 493 HCRAKWNGGDRILRCRPR*ITSSSNDY 413
           H +  W+GG RI R R R I + S DY
Sbjct: 632 HVKLFWSGGKRIARVRSRDIVADSGDY 658

>GPMI_MYCHO (Q6Y8Q8) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 499

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = -3

Query: 198 SRHQIAVEVRVGEKK-VLEQINDIFKEREQELDDLEYYQERRLKDLGFIGDNGDIIFW 28
           SR+Q A +  +G+ K V+E I+D  + + ++    E+++  +LKD  F+ +   IIF+
Sbjct: 193 SRNQEAYDAILGQSKNVIENIDDYIESQYKKGIFDEFFEPAQLKDGVFVKNGDSIIFF 250

>Y1913_FUSNN (Q8RHT2) UPF0144 protein FN1913|
          Length = 508

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 150 LEQINDIFKEREQELDDLEYYQERRL 73
           LE+IND  +E+ +E+DDL   QE  L
Sbjct: 107 LEKINDELEEKRKEIDDLRVKQEEEL 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,691,920
Number of Sequences: 219361
Number of extensions: 1392078
Number of successful extensions: 3751
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3739
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)