Clone Name | rbah63h04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC093832.2| Homo sapiens BAC clone RP11-402L11 from 4, complete sequence Length = 187232 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 236 ctggcaaaacttggaactttgt 257 |||||||||||||||||||||| Sbjct: 27543 ctggcaaaacttggaactttgt 27564
>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07, complete sequence Length = 114135 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 tgccattacaacaactgaaac 128 ||||||||||||||||||||| Sbjct: 45693 tgccattacaacaactgaaac 45713
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 tcgccggtaataccagctact 237 ||||||||||||||||||||| Sbjct: 55449 tcgccggtaataccagctact 55429
>emb|AL512303.10| Human DNA sequence from clone RP1-249I4 on chromosome 6 Contains the KIAA0441 gene and a putative novel gene, complete sequence Length = 106408 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 gtagctcagcattacattgtc 202 ||||||||||||||||||||| Sbjct: 41276 gtagctcagcattacattgtc 41296
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 tgccattacaacaactgaaac 128 ||||||||||||||||||||| Sbjct: 5838929 tgccattacaacaactgaaac 5838949
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 atgtcagttgccgaacccaaa 425 ||||||||||||||||||||| Sbjct: 31501252 atgtcagttgccgaacccaaa 31501232
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11 Length = 155168 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 atgtcagttgccgaacccaaa 425 ||||||||||||||||||||| Sbjct: 136649 atgtcagttgccgaacccaaa 136629
>gb|DP000017.1| Sus scrofa target 1 genomic scaffold Length = 1471440 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tgatattttgctatttgtac 286 |||||||||||||||||||| Sbjct: 105002 tgatattttgctatttgtac 104983
>gb|AC134605.5| Mus musculus BAC clone RP23-42E17 from chromosome 14, complete sequence Length = 216097 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 aggactgtaatgaaaaaatt 77 |||||||||||||||||||| Sbjct: 166479 aggactgtaatgaaaaaatt 166460
>gb|BC070876.1| Rattus norvegicus CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase), mRNA (cDNA clone MGC:91485 IMAGE:7096385), complete cds Length = 1890 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 caggctcatgctgagctgga 173 |||||||||||||||||||| Sbjct: 694 caggctcatgctgagctgga 675
>gb|AC068594.15| Homo sapiens chromosome 17, clone RP11-285E9, complete sequence Length = 168501 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 aggctgtataaataggctct 316 |||||||||||||||||||| Sbjct: 27046 aggctgtataaataggctct 27065
>gb|AF016672.3| Caenorhabditis elegans cosmid F56D12, complete sequence Length = 44036 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tggagcaaatttgtagctca 189 |||||||||||||||||||| Sbjct: 42136 tggagcaaatttgtagctca 42117
>gb|U80841.2| Caenorhabditis elegans cosmid C13A10, complete sequence Length = 14687 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tggagcaaatttgtagctca 189 |||||||||||||||||||| Sbjct: 2000 tggagcaaatttgtagctca 1981
>ref|NM_001030862.1| Gallus gallus cell-cycle related and expression-elevated protein in tumor (CREPT), mRNA Length = 3428 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tacaacaactgaaactttct 133 |||||||||||||||||||| Sbjct: 471 tacaacaactgaaactttct 490
>gb|DQ372940.1| Gallus gallus cell-cycle related and expression-elevated protein in tumor (CREPT) mRNA, complete cds Length = 1148 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tacaacaactgaaactttct 133 |||||||||||||||||||| Sbjct: 448 tacaacaactgaaactttct 467
>emb|AJ851386.1| Gallus gallus mRNA for hypothetical protein, clone 1d17 Length = 3428 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tacaacaactgaaactttct 133 |||||||||||||||||||| Sbjct: 471 tacaacaactgaaactttct 490
>gb|AC022868.10| Homo sapiens chromosome 8, clone RP11-367E12, complete sequence Length = 166018 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 tttgtagctcagcattacat 198 |||||||||||||||||||| Sbjct: 111745 tttgtagctcagcattacat 111764
>gb|AC114688.3| Homo sapiens chromosome 18, clone RP11-316J22, complete sequence Length = 166525 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 tattgattttacaaacaaca 380 |||||||||||||||||||| Sbjct: 70050 tattgattttacaaacaaca 70069
>gb|AC016098.8| Homo sapiens, clone RP11-25P13, complete sequence Length = 156275 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 tattgattttacaaacaaca 380 |||||||||||||||||||| Sbjct: 101558 tattgattttacaaacaaca 101539
>gb|AC158442.3| Sus scrofa clone RP44-406A19, complete sequence Length = 173956 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tgatattttgctatttgtac 286 |||||||||||||||||||| Sbjct: 105002 tgatattttgctatttgtac 104983
>gb|BC102187.1| Bos taurus similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase), mRNA (cDNA clone MGC:127038 IMAGE:7941929), complete cds Length = 1587 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 caggctcatgctgagctgga 173 |||||||||||||||||||| Sbjct: 650 caggctcatgctgagctgga 631
>ref|NM_138899.2| Rattus norvegicus CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) (Cdipt), mRNA Length = 1890 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 caggctcatgctgagctgga 173 |||||||||||||||||||| Sbjct: 694 caggctcatgctgagctgga 675
>gb|AC115781.9| Mus musculus chromosome 19, clone RP23-167K23, complete sequence Length = 210190 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 actgtaatgaaaaaattgct 80 |||||||||||||||||||| Sbjct: 68620 actgtaatgaaaaaattgct 68639
>dbj|AP002791.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-843F11, complete sequences Length = 172914 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tgctgagctggagcaaattt 181 |||||||||||||||||||| Sbjct: 20505 tgctgagctggagcaaattt 20486
>dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14, complete sequence Length = 175731 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 aaaattgcttcattgagttc 91 |||||||||||||||||||| Sbjct: 6666 aaaattgcttcattgagttc 6647
>dbj|AP000652.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-8G5, complete sequence Length = 115530 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 aaaattgcttcattgagttc 91 |||||||||||||||||||| Sbjct: 114318 aaaattgcttcattgagttc 114299
>dbj|AB022890.1| Rattus norvegicus PIS1 gene for phosphatidylinositol synthase, complete cds Length = 3890 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 caggctcatgctgagctgga 173 |||||||||||||||||||| Sbjct: 1778 caggctcatgctgagctgga 1759
>ref|NM_001034482.1| Bos taurus similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) (MGC127038), mRNA Length = 1587 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 caggctcatgctgagctgga 173 |||||||||||||||||||| Sbjct: 650 caggctcatgctgagctgga 631
>gb|AC172751.1| Mus musculus BAC clone RP23-341F9 from chromosome 14, complete sequence Length = 200222 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 aggactgtaatgaaaaaatt 77 |||||||||||||||||||| Sbjct: 129232 aggactgtaatgaaaaaatt 129251
>emb|AL807767.10| Mouse DNA sequence from clone RP23-354E5 on chromosome 4, complete sequence Length = 165549 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ctgtaatgaaaaaattgctt 81 |||||||||||||||||||| Sbjct: 75554 ctgtaatgaaaaaattgctt 75535
>dbj|D82928.1| Rat mRNA for phosphatidylinositol synthase, complete cds Length = 1621 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 caggctcatgctgagctgga 173 |||||||||||||||||||| Sbjct: 442 caggctcatgctgagctgga 423 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,578,867 Number of Sequences: 3902068 Number of extensions: 3578867 Number of successful extensions: 81882 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81770 Number of HSP's gapped (non-prelim): 112 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)