ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FA29A_HUMAN (Q7Z4H7) Protein FAM29A 29 3.7
2FBPB2_HAEIN (P71338) Iron(III)-transport system permease protein... 28 8.3
3RPOC_LACJO (Q74L94) DNA-directed RNA polymerase beta' chain (EC ... 28 8.3

>FA29A_HUMAN (Q7Z4H7) Protein FAM29A|
          Length = 955

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 46  CTDPTDQMDSVQAEKHTREWFYKL*GFCTGSAP 144
           C  P DQ    +  KH  EW  ++ G C  S P
Sbjct: 77  CWPPFDQKSDTEFRKHCCEWIKRISGECGSSFP 109



to top

>FBPB2_HAEIN (P71338) Iron(III)-transport system permease protein fbpB 2|
          Length = 506

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 228 EFFFRGKENKSASGETVGRPFLL 160
           E FFRGK+    SG+ V RP+L+
Sbjct: 235 EIFFRGKQTLYHSGKGVTRPYLV 257



to top

>RPOC_LACJO (Q74L94) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1224

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = +2

Query: 35   GTVSVQTQQIKWTQFKRKNTRGSGSTNCEDFVQAVPRRNHRI---NKNGRPTVS 187
            GTV+ Q+     TQ   +N    G     D  Q +PR        N  GR T+S
Sbjct: 921  GTVAAQSIGEPGTQLTMRNFHNGGVAGAADITQGLPRVQELFEARNPKGRATIS 974


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,857,062
Number of Sequences: 219361
Number of extensions: 705169
Number of successful extensions: 1856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1856
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top