>emb|X16000.1|HVGLN2 Hordeum vulgare mRNA for glutamine synthetase precursor (EC 6.3.1.2)
          Length = 1549

 Score =  444 bits (224), Expect = e-122
 Identities = 233/235 (99%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cgttttataataacgtagttctcnaa-tggactcaggtacagtgagtgtacagacccaac 59
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1530 cgttttataataacgtagttctccaaatggactcaggtacagtgagtgtacagacccaac 1471

                                                                        
Query: 60   agatcaaatggactcagttcaagcggaaaaacacacgcgggagtggttctacaaactgtg 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1470 agatcaaatggactcagttcaagcggaaaaacacacgcgggagtggttctacaaactgtg 1411

                                                                        
Query: 120  aggattttgtacaggcagtgccccgacggaaccacaggatcaacaagaatggacggccaa 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 aggattttgtacaggcagtgccccgacggaaccacaggatcaacaagaatggacggccaa 1351

                                                                   
Query: 180  cggtctcgccgctcgccgatttattttcttttccccggaagaagaattcgtcctt 234
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1350 cggtctcgccgctcgccgatttattttcttttccccggaagaagaattcgtcctt 1296

>gb|DQ124214.1| Triticum aestivum plastid glutamine synthetase isoform GS2c (GS2)
            mRNA, complete cds; nuclear gene for plastid product
          Length = 1689

 Score =  234 bits (118), Expect = 1e-58
 Identities = 159/171 (92%), Gaps = 4/171 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    ttataataacgtagttctcn-aatggactcaggtacagtgagtgtacagacccaacagat 63
            |||||||||||||||||||  ||||||||||||||||| || ||||||||||||||||||
Sbjct: 1647 ttataataacgtagttctccgaatggactcaggtacagggattgtacagacccaacagat 1588

                                                                        
Query: 64   caaatggactcagttcaagcggaaaaacacacgcgggagtggttctacaaactgtgagga 123
            ||||||||||||||||||||| |||||||  ||   ||| ||||||||||||||||||||
Sbjct: 1587 caaatggactcagttcaagcgaaaaaacatgcg---gagcggttctacaaactgtgagga 1531

                                                               
Query: 124  ttttgtacaggcagtgccccgacggaaccacaggatcaacaagaatggacg 174
            |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1530 ttttgtacagacagtgccccgacggaaccacaggatcaacaagaatggacg 1480



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 193  cgccgatttattttcttttccccggaagaa 222
            ||||||||||||||||||||||||||||||
Sbjct: 1472 cgccgatttattttcttttccccggaagaa 1443

>gb|DQ124212.1| Triticum aestivum plastid glutamine synthetase isoform GS2a (GS2)
            mRNA, complete cds; nuclear gene for plastid product
          Length = 1713

 Score =  224 bits (113), Expect = 1e-55
 Identities = 198/223 (88%), Gaps = 9/223 (4%)
 Strand = Plus / Minus

                                                                        
Query: 5    ttataataacgtagttctcn-aatggactcaggtacagtgagtgtacagacccaacagat 63
            |||||||||||||||||||  ||||||||||||||||| || ||||||||||||||||||
Sbjct: 1706 ttataataacgtagttctccgaatggactcaggtacagggattgtacagacccaacagat 1647

                                                                        
Query: 64   caaatggactcagttcaagcggaaaaacacacgcgggagtggttctacaaactgtgagga 123
            ||||||||||||||||||||| |||||||  ||   ||| |||||||||||| |||| ||
Sbjct: 1646 caaatggactcagttcaagcgaaaaaacatgcg---gagcggttctacaaaccgtgaaga 1590

                                                                        
Query: 124  ttttgtacaggcagtgccccgacggaaccacaggatcaacaagaatggac----ggccaa 179
            |||||||||| |||||||||||||||||||||||||||||||||||||||    | | ||
Sbjct: 1589 ttttgtacagacagtgccccgacggaaccacaggatcaacaagaatggacgacggacgaa 1530

                                                       
Query: 180  cggtctcgccgctcgccgatttattttcttttccccggaagaa 222
            | | |||||| | ||||||||||||||||||||||| ||||||
Sbjct: 1529 cagcctcgccac-cgccgatttattttcttttccccagaagaa 1488

>gb|DQ124213.1| Triticum aestivum plastid glutamine synthetase isoform GS2b (GS2)
            mRNA, complete cds; nuclear gene for plastid product
          Length = 1593

 Score =  214 bits (108), Expect = 9e-53
 Identities = 167/181 (92%), Gaps = 8/181 (4%)
 Strand = Plus / Minus

                                                                        
Query: 46   tgtacagacccaacagatcaaatggactcagttcaagcggaaaaacacacgcgggagtgg 105
            ||||||||||||||||||||||||||||||||||||||| || || ||| |||| || ||
Sbjct: 1593 tgtacagacccaacagatcaaatggactcagttcaagcgaaacaa-acatgcgg-agcgg 1536

                                                                        
Query: 106  ttctacaaactgtgaggat----tttgtacaggcagtgccccgacggaaccacaggatca 161
            |||||||||||||||||||    ||||||||| |||||||||||||||||||||||||||
Sbjct: 1535 ttctacaaactgtgaggatggattttgtacagacagtgccccgacggaaccacaggatca 1476

                                                                        
Query: 162  acaagaatggacggccaacggtctcgccgctcgccgatttattttcttttccccggaaga 221
            ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct: 1475 acaagaatggacggccaacggtc-cgccgc-cgccgatttattttcttttcgccggaaga 1418

             
Query: 222  a 222
            |
Sbjct: 1417 a 1417

>ref|XM_661336.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.40415)
            partial mRNA
          Length = 3129

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 128  gtacaggcagtgccccgacgg 148
            |||||||||||||||||||||
Sbjct: 1097 gtacaggcagtgccccgacgg 1117

>gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0018N12, complete sequence
          Length = 137127

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  ttttcttttccccggaagaa 222
            ||||||||||||||||||||
Sbjct: 3978 ttttcttttccccggaagaa 3997

>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094P07,
              complete sequence
          Length = 162311

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    ttttcttttccccggaagaa 222
              ||||||||||||||||||||
Sbjct: 143724 ttttcttttccccggaagaa 143743

>gb|AC147358.2| Xenopus tropicalis clone CH216-71J8, complete sequence
          Length = 170238

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   gttctacaaactgtgaggat 124
             ||||||||||||||||||||
Sbjct: 97736 gttctacaaactgtgaggat 97717

>gb|AC147893.2| Xenopus tropicalis clone CH216-36J13, complete sequence
          Length = 159658

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    gttctacaaactgtgaggat 124
              ||||||||||||||||||||
Sbjct: 153251 gttctacaaactgtgaggat 153270

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     ttttcttttccccggaagaa 222
               ||||||||||||||||||||
Sbjct: 5153735 ttttcttttccccggaagaa 5153716

>gb|AY207394.1| Homo sapiens unknown protein mRNA, partial sequence
          Length = 429

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 atttattttcttttccccgg 217
           ||||||||||||||||||||
Sbjct: 399 atttattttcttttccccgg 418

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     ttttcttttccccggaagaa 222
               ||||||||||||||||||||
Sbjct: 5220152 ttttcttttccccggaagaa 5220133


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,204,612
Number of Sequences: 3902068
Number of extensions: 2204612
Number of successful extensions: 44468
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44397
Number of HSP's gapped (non-prelim): 63
length of query: 234
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 212
effective length of database: 17,147,199,772
effective search space: 3635206351664
effective search space used: 3635206351664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)