ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63g22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) ... 182 4e-43
2gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, c... 182 4e-43
3gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) ... 174 1e-40
4gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, p... 174 1e-40
5gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) ... 172 4e-40
6gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, p... 172 4e-40
7gb|AF384147.1|AF384147 Triticum aestivum cyclophilin mRNA, parti... 149 6e-33
8ref|XM_463914.1| Oryza sativa (japonica cultivar-group), mRNA 90 5e-15
9ref|XM_506694.1| PREDICTED Oryza sativa (japonica cultivar-group... 90 5e-15
10gb|AF263543.1| Oryza sativa clone 15CAC microsatellite sequence 90 5e-15
11gb|DQ480736.1| Oryza sativa (indica cultivar-group) cyclophilinA... 90 5e-15
12dbj|AK061894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 5e-15
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
14dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
15dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
16dbj|AK098919.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 5e-15
17gb|L29469.1|RICCYP2G Oryza sativa cyclophilin 2 (Cyp2) gene, com... 90 5e-15
18dbj|D29701.1|RICYK13 Oryza sativa mRNA, partial homologous to cy... 80 5e-12
19gb|L29470.1|RICCYP2R Oryza sativa cyclophilin 2 (Cyp2) mRNA, com... 74 3e-10
20gb|BT016413.1| Zea mays clone Contig246 mRNA sequence 64 3e-07
21gb|BT017873.1| Zea mays clone EL01N0513A10.c mRNA sequence 64 3e-07
22gb|AF263542.1| Oryza sativa clone 19CAC microsatellite sequence 64 3e-07
23gb|AY109901.1| Zea mays CL2214_-5 mRNA sequence 64 3e-07
24gb|BT016412.1| Zea mays clone Contig245 mRNA sequence 52 0.001
25emb|X68678.1|ZMCYCL Z.mays gene for cyclophilin 52 0.001
26gb|M55021.1|MZECYP Zea mays cyclophilin (CyP) mRNA, complete cds 52 0.001
27gb|AY391451.1| Danio rerio peptidylprolyl isomerase A (PPIA-1) m... 46 0.064
28ref|NM_199957.1| Danio rerio peptidylprolyl isomerase A, like (p... 46 0.064
29gb|BC071370.1| Danio rerio peptidylprolyl isomerase A, like, mRN... 46 0.064
30gb|U36797.1|HMU36797 Hirudo medicinalis cyclophilin-A mRNA (hcyp... 46 0.064
31gb|BC059470.1| Danio rerio peptidylprolyl isomerase A, like, mRN... 46 0.064
32gb|AY351891.1| Nothofagus cunninghamii clone ncutas20 microsatel... 42 1.00
33ref|NM_074348.4| Caenorhabditis elegans CYclophyliN family membe... 42 1.00
34emb|AL032663.1|CEY75B12B Caenorhabditis elegans YAC Y75B12B, com... 42 1.00
35gb|U27559.1|CEU27559 Caenorhabditis elegans cyclophilin (cyp-7) ... 42 1.00
36emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chr... 42 1.00
37emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 3.9
38emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in ... 40 3.9 
>gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) mRNA, complete cds
          Length = 845

 Score =  182 bits (92), Expect = 4e-43
 Identities = 110/116 (94%)
 Strand = Plus / Minus

                                                                       
Query: 18  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 77
           |||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 776 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 717

                                                                   
Query: 78  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 133
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 716 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 661



 Score =  165 bits (83), Expect = 1e-37
 Identities = 86/87 (98%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 274
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 586 ctagagctggccgcagtcggcgatgacgacttgcttggagcaggtgccgctgcgggagcc 527

                                      
Query: 275 caccttctcgatgttcttgacgacgtc 301
           |||||||||||||||||||||||||||
Sbjct: 526 caccttctcgatgttcttgacgacgtc 500
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>gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, complete cds
          Length = 781

 Score =  182 bits (92), Expect = 4e-43
 Identities = 110/116 (94%)
 Strand = Plus / Minus

                                                                       
Query: 18  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 77
           |||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 740 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 681

                                                                   
Query: 78  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 133
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 680 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 625



 Score =  165 bits (83), Expect = 1e-37
 Identities = 86/87 (98%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 274
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 550 ctagagctggccgcagtcggcgatgacgacttgcttggagcaggtgccgctgcgggagcc 491

                                      
Query: 275 caccttctcgatgttcttgacgacgtc 301
           |||||||||||||||||||||||||||
Sbjct: 490 caccttctcgatgttcttgacgacgtc 464
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>gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) mRNA, complete cds
          Length = 859

 Score =  174 bits (88), Expect = 1e-40
 Identities = 109/116 (93%)
 Strand = Plus / Minus

                                                                       
Query: 18  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 77
           |||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct: 784 ggaagataaccaaggcggccggacagagatccagcagcccaaagagtccacctaaaaccc 725

                                                                   
Query: 78  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 133
           |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||
Sbjct: 724 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacgac 669



 Score =  165 bits (83), Expect = 1e-37
 Identities = 86/87 (98%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 274
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 578 ctagagctggccgcagtcggcgatgaccacctgcttggagcaggtgccgctgcgggagcc 519

                                      
Query: 275 caccttctcgatgttcttgacgacgtc 301
           |||||||||||||||||||||||||||
Sbjct: 518 caccttctcgatgttcttgacgacgtc 492
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>gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, partial cds
          Length = 519

 Score =  174 bits (88), Expect = 1e-40
 Identities = 109/116 (93%)
 Strand = Plus / Minus

                                                                       
Query: 18  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 77
           |||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct: 514 ggaagataaccaaggcggccggacagagatccagcagcccaaagagtccacctaaaaccc 455

                                                                   
Query: 78  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 133
           |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||
Sbjct: 454 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacgac 399



 Score =  165 bits (83), Expect = 1e-37
 Identities = 86/87 (98%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 274
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 308 ctagagctggccgcagtcggcgatgaccacctgcttggagcaggtgccgctgcgggagcc 249

                                      
Query: 275 caccttctcgatgttcttgacgacgtc 301
           |||||||||||||||||||||||||||
Sbjct: 248 caccttctcgatgttcttgacgacgtc 222
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>gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) mRNA, complete cds
          Length = 869

 Score =  172 bits (87), Expect = 4e-40
 Identities = 87/87 (100%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 527

                                      
Query: 275 caccttctcgatgttcttgacgacgtc 301
           |||||||||||||||||||||||||||
Sbjct: 526 caccttctcgatgttcttgacgacgtc 500



 Score =  168 bits (85), Expect = 6e-39
 Identities = 106/113 (93%)
 Strand = Plus / Minus

                                                                       
Query: 18  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 77
           |||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 780 ggaagataaccaaggccgccggacgcagatccagcggcccaaagagtccacctaaaaccc 721

                                                                
Query: 78  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacac 130
           |||||||||||||||||||||||||||||||||||  ||| ||||||||||||
Sbjct: 720 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacac 668
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>gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, partial cds
          Length = 494

 Score =  172 bits (87), Expect = 4e-40
 Identities = 87/87 (100%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 248

                                      
Query: 275 caccttctcgatgttcttgacgacgtc 301
           |||||||||||||||||||||||||||
Sbjct: 247 caccttctcgatgttcttgacgacgtc 221



 Score =  155 bits (78), Expect = 1e-34
 Identities = 99/106 (93%)
 Strand = Plus / Minus

                                                                       
Query: 25  aaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccctcctaaa 84
           ||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 494 aaccaaggccgccggacgcagatccagcggcccaaagagtccacctaaaaccctcctaaa 435

                                                         
Query: 85  ccaaccacggagatctcatcggacggacaggggcaagacacgacac 130
           ||||||||||||||||||||||||||||  ||| ||||||||||||
Sbjct: 434 ccaaccacggagatctcatcggacggaccaggggaagacacgacac 389
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>gb|AF384147.1|AF384147 Triticum aestivum cyclophilin mRNA, partial cds
          Length = 430

 Score =  149 bits (75), Expect = 6e-33
 Identities = 84/87 (96%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 274
           |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||
Sbjct: 396 ctagagctggccgcagtcggcgatgacgacctgcttggcggtggtgccgctgcgggagcc 337

                                      
Query: 275 caccttctcgatgttcttgacgacgtc 301
           |||||||||||||||||||||||||||
Sbjct: 336 caccttctcgatgttcttgacgacgtc 310
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>ref|XM_463914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 885

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 217 agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 607 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 548

                                    
Query: 277 ccttctcgatgttcttgacgacgtc 301
           |||||||||||  ||||||||||||
Sbjct: 547 ccttctcgatggccttgacgacgtc 523
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>ref|XM_506694.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0088N06.23
           mRNA
          Length = 887

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 217 agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 608 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 549

                                    
Query: 277 ccttctcgatgttcttgacgacgtc 301
           |||||||||||  ||||||||||||
Sbjct: 548 ccttctcgatggccttgacgacgtc 524
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>gb|AF263543.1| Oryza sativa clone 15CAC microsatellite sequence
          Length = 435

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 217 agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 120 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 61

                                    
Query: 277 ccttctcgatgttcttgacgacgtc 301
           |||||||||||  ||||||||||||
Sbjct: 60  ccttctcgatggccttgacgacgtc 36
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>gb|DQ480736.1| Oryza sativa (indica cultivar-group) cyclophilinA mRNA, complete
           cds
          Length = 588

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 217 agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 524 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 465

                                    
Query: 277 ccttctcgatgttcttgacgacgtc 301
           |||||||||||  ||||||||||||
Sbjct: 464 ccttctcgatggccttgacgacgtc 440
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>dbj|AK061894.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G07, full
           insert sequence
          Length = 887

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 217 agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 608 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 549

                                    
Query: 277 ccttctcgatgttcttgacgacgtc 301
           |||||||||||  ||||||||||||
Sbjct: 548 ccttctcgatggccttgacgacgtc 524
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                           
Query: 217     agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
               ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 1116673 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 1116614

                                        
Query: 277     ccttctcgatgttcttgacgacgtc 301
               |||||||||||  ||||||||||||
Sbjct: 1116613 ccttctcgatggccttgacgacgtc 1116589
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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1020_C02
          Length = 124578

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                         
Query: 217   agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
             ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 69197 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 69138

                                      
Query: 277   ccttctcgatgttcttgacgacgtc 301
             |||||||||||  ||||||||||||
Sbjct: 69137 ccttctcgatggccttgacgacgtc 69113
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>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0088N06
          Length = 123454

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                          
Query: 217    agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
              ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 105381 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 105322

                                       
Query: 277    ccttctcgatgttcttgacgacgtc 301
              |||||||||||  ||||||||||||
Sbjct: 105321 ccttctcgatggccttgacgacgtc 105297
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>dbj|AK098919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N03, full
           insert sequence
          Length = 885

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 217 agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 607 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 548

                                    
Query: 277 ccttctcgatgttcttgacgacgtc 301
           |||||||||||  ||||||||||||
Sbjct: 547 ccttctcgatggccttgacgacgtc 523
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>gb|L29469.1|RICCYP2G Oryza sativa cyclophilin 2 (Cyp2) gene, complete cds
          Length = 2323

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                        
Query: 217  agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
            ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 1663 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 1604

                                     
Query: 277  ccttctcgatgttcttgacgacgtc 301
            |||||||||||  ||||||||||||
Sbjct: 1603 ccttctcgatggccttgacgacgtc 1579
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>dbj|D29701.1|RICYK13 Oryza sativa mRNA, partial homologous to cyclophilin gene
          Length = 356

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                       
Query: 222 tggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcccaccttc 281
           |||||||||||||||||||||||| |||||| |  | | |||| |||||| |||||||||
Sbjct: 260 tggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatcccaccttc 201

                               
Query: 282 tcgatgttcttgacgacgtc 301
           ||||||  ||||||||||||
Sbjct: 200 tcgatggccttgacgacgtc 181
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>gb|L29470.1|RICCYP2R Oryza sativa cyclophilin 2 (Cyp2) mRNA, complete cds
          Length = 824

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                       
Query: 217 agagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagccca 276
           ||||||||||||||||||||||||| ||  |||||| |  | | |||| |||||| ||||
Sbjct: 552 agagctggccgcagtcggcgatgaccacgggcttggcggtgctcccgccgcgggatccca 493

                                    
Query: 277 ccttctcgatgttcttgacgacgtc 301
           |||||||||||  ||||||||||||
Sbjct: 492 ccttctcgatggccttgacgacgtc 468
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>gb|BT016413.1| Zea mays clone Contig246 mRNA sequence
          Length = 868

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 274
           |||||||||||| ||||| ||||     |||| |||||||  || |||||||||||||||
Sbjct: 564 ctagagctggccacagtcagcgaccttcacctccttggaggtggcgccgctgcgggagcc 505

                                   
Query: 275 caccttctcgatgttcttgacgac 298
           |||||||||||||  |||||||||
Sbjct: 504 caccttctcgatggccttgacgac 481
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>gb|BT017873.1| Zea mays clone EL01N0513A10.c mRNA sequence
          Length = 978

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 274
           |||||||||||| ||||| ||||     |||| |||||||  || |||||||||||||||
Sbjct: 680 ctagagctggccacagtcagcgaccttcacctccttggaggtggcgccgctgcgggagcc 621

                                   
Query: 275 caccttctcgatgttcttgacgac 298
           |||||||||||||  |||||||||
Sbjct: 620 caccttctcgatggccttgacgac 597
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>gb|AF263542.1| Oryza sativa clone 19CAC microsatellite sequence
          Length = 429

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 217 agagctggccgcagtcggcgatgacgacctgcttgg 252
           ||||||||||||||||||||||||||||| ||||||
Sbjct: 99  agagctggccgcagtcggcgatgacgaccggcttgg 64
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>gb|AY109901.1| Zea mays CL2214_-5 mRNA sequence
          Length = 636

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 274
           |||||||||||| ||||| ||||     |||| |||||||  || |||||||||||||||
Sbjct: 371 ctagagctggccacagtcagcgaccttcacctccttggaggtggcgccgctgcgggagcc 312

                                   
Query: 275 caccttctcgatgttcttgacgac 298
           |||||||||||||  |||||||||
Sbjct: 311 caccttctcgatggccttgacgac 288
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>gb|BT016412.1| Zea mays clone Contig245 mRNA sequence
          Length = 858

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 260 gccgctgcgggagcccaccttctcgatgttcttgacgacgtc 301
           |||| |||||| ||||||||||||||||  ||||||||||||
Sbjct: 534 gccgttgcgggtgcccaccttctcgatggccttgacgacgtc 493
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>emb|X68678.1|ZMCYCL Z.mays gene for cyclophilin
          Length = 2598

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 260  gccgctgcgggagcccaccttctcgatgttcttgacgacgtc 301
            |||| |||||| ||||||||||||||||  ||||||||||||
Sbjct: 1532 gccgttgcgggtgcccaccttctcgatggccttgacgacgtc 1491
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>gb|M55021.1|MZECYP Zea mays cyclophilin (CyP) mRNA, complete cds
          Length = 792

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 260 gccgctgcgggagcccaccttctcgatgttcttgacgacgtc 301
           |||| |||||| ||||||||||||||||  ||||||||||||
Sbjct: 495 gccgttgcgggtgcccaccttctcgatggccttgacgacgtc 454
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>gb|AY391451.1| Danio rerio peptidylprolyl isomerase A (PPIA-1) mRNA, complete cds
          Length = 743

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 216 tagagctggccgcagtcggcgatgacgacct 246
           |||||||||||||||| |||||| |||||||
Sbjct: 557 tagagctggccgcagttggcgatcacgacct 527
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>ref|NM_199957.1| Danio rerio peptidylprolyl isomerase A, like (ppial), mRNA
          Length = 822

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 216 tagagctggccgcagtcggcgatgacgacct 246
           |||||||||||||||| |||||| |||||||
Sbjct: 634 tagagctggccgcagttggcgatcacgacct 604
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>gb|BC071370.1| Danio rerio peptidylprolyl isomerase A, like, mRNA (cDNA clone
           MGC:86688 IMAGE:6895545), complete cds
          Length = 784

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 216 tagagctggccgcagtcggcgatgacgacct 246
           |||||||||||||||| |||||| |||||||
Sbjct: 566 tagagctggccgcagttggcgatcacgacct 536
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>gb|U36797.1|HMU36797 Hirudo medicinalis cyclophilin-A mRNA (hcyp),complete cds
          Length = 617

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 216 tagagctggccgcagtcggcgat 238
           |||||||||||||||||||||||
Sbjct: 482 tagagctggccgcagtcggcgat 460
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>gb|BC059470.1| Danio rerio peptidylprolyl isomerase A, like, mRNA (cDNA clone
           MGC:73102 IMAGE:4786094), complete cds
          Length = 822

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 216 tagagctggccgcagtcggcgatgacgacct 246
           |||||||||||||||| |||||| |||||||
Sbjct: 634 tagagctggccgcagttggcgatcacgacct 604
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>gb|AY351891.1| Nothofagus cunninghamii clone ncutas20 microsatellite sequence
          Length = 778

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 273 cccaccttctcgatgttcttgacgacgtc 301
           |||||||||||||||  ||||||||||||
Sbjct: 92  cccaccttctcgatggccttgacgacgtc 64
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>ref|NM_074348.4| Caenorhabditis elegans CYclophyliN family member (cyn-7) (cyn-7)
           mRNA, complete cds
          Length = 644

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 216 tagagctggccgcagtcggcgatga 240
           |||||||| ||||||||||||||||
Sbjct: 545 tagagctgtccgcagtcggcgatga 521
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>emb|AL032663.1|CEY75B12B Caenorhabditis elegans YAC Y75B12B, complete sequence
          Length = 23906

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 216  tagagctggccgcagtcggcgatga 240
            |||||||| ||||||||||||||||
Sbjct: 3489 tagagctgtccgcagtcggcgatga 3513
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>gb|U27559.1|CEU27559 Caenorhabditis elegans cyclophilin (cyp-7) mRNA, complete cds
          Length = 525

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 216 tagagctggccgcagtcggcgatga 240
           |||||||| ||||||||||||||||
Sbjct: 524 tagagctgtccgcagtcggcgatga 500
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>emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chromosome 13, complete
             sequence
          Length = 183340

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 64    tccacctaaaaccctcctaaaccaaccac 92
             ||||||| ||||| |||||||||||||||
Sbjct: 53760 tccacctgaaaccatcctaaaccaaccac 53732
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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    ggccgcagtcggcgatgacg 242
              ||||||||||||||||||||
Sbjct: 116807 ggccgcagtcggcgatgacg 116788
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>emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in linkage group 8, complete
              sequence
          Length = 217745

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 266    gcgggagcccaccttctcgatgtt 289
              |||||||||||||||| |||||||
Sbjct: 174848 gcgggagcccaccttcacgatgtt 174871


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,237,759
Number of Sequences: 3902068
Number of extensions: 1237759
Number of successful extensions: 23227
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23159
Number of HSP's gapped (non-prelim): 56
length of query: 301
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 279
effective length of database: 17,147,199,772
effective search space: 4784068736388
effective search space used: 4784068736388
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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