Clone Name | rbah63g18 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468478.1| Oryza sativa (japonica cultivar-group), mRNA Length = 393 Score = 335 bits (169), Expect = 1e-88 Identities = 334/389 (85%) Strand = Plus / Minus Query: 220 cgcctatcagaagcaaccgagtcagcagaaaatagatacttcacacgagaaaggaccgaa 279 |||||||| || || ||||| ||||||||||| || |||||||| |||||||| || ||| Sbjct: 389 cgcctatctgatgccaccgattcagcagaaaacaggtacttcacgcgagaaagaacagaa 330 Query: 280 tcacttgctggatcatatggatggtccttggatgggatttccaatatcgcagggattggc 339 || |||||| ||||| ||||| |||||||||||||| |||||||| ||||| | ||| Sbjct: 329 tcgtgtgctgggtcatacggatgatccttggatgggatctccaatatagcaggaacgggc 270 Query: 340 ttgttgtagctatccaccagaaatctaatcatgtttgcaatatattggctgatgagcaca 399 ||||||||||||||||||| || || |||||||| |||| ||||||||||||||| ||| Sbjct: 269 ctgttgtagctatccaccaggaaccttatcatgttcgcaacatattggctgatgagaaca 210 Query: 400 atagcaatatcctcccttgcagtaaattctttaaatgcatcttcaatctgtttcactgtg 459 || ||||| |||||||||| ||| ||||| |||||||||||||| || ||||| ||||| Sbjct: 209 attgcaatgtcctcccttgtagtgaattccttaaatgcatcttcgatttgtttgactgtt 150 Query: 460 gttttgttatccacaagaaggtaatttgttttcttgcgcagatcaacattgccaacccca 519 ||||||||||| |||| |||||||||||| || || | |||||||||||||||||| ||| Sbjct: 149 gttttgttatcaacaataaggtaatttgtctttttcctcagatcaacattgccaactcca 90 Query: 520 gccatcaaaaacccagtaacagtgtcctcatcagcgatgatggcgatgagcgcggagttg 579 |||| |||||||||||| || |||||||| || ||||||||||||||||| |||||| || Sbjct: 89 gccaacaaaaacccagtgaccgtgtcctcgtcggcgatgatggcgatgagagcggagctg 30 Query: 580 ttcgccgggatattggacctccccgccat 608 || | |||||| ||| |||||||||||| Sbjct: 29 ttggtcgggatgctgggcctccccgccat 1
>gb|AY103927.1| Zea mays PCO061369 mRNA sequence Length = 866 Score = 311 bits (157), Expect = 2e-81 Identities = 331/389 (85%) Strand = Plus / Minus Query: 220 cgcctatcagaagcaaccgagtcagcagaaaatagatacttcacacgagaaaggaccgaa 279 ||||||||||| || ||||| || ||||| || ||||| ||||| ||||| || || || Sbjct: 594 cgcctatcagacgccaccgattctgcagagaacagatatttcactcgagagagcacagag 535 Query: 280 tcacttgctggatcatatggatggtccttggatgggatttccaatatcgcagggattggc 339 || |||||||||||||||||||||||||||||||| |||| || ||||||| ||| Sbjct: 534 tcgtgcgctggatcatatggatggtccttggatgggatctccagaatagcagggacgggc 475 Query: 340 ttgttgtagctatccaccagaaatctaatcatgtttgcaatatattggctgatgagcaca 399 ||||||||||||||||||||||| || |||||||| |||||||| || |||||||||||| Sbjct: 474 ttgttgtagctatccaccagaaaccttatcatgttggcaatatactgactgatgagcaca 415 Query: 400 atagcaatatcctcccttgcagtaaattctttaaatgcatcttcaatctgtttcactgtg 459 ||||||||||||||||| | |||||||||||| || ||||| || || ||||| ||||| Sbjct: 414 atagcaatatcctccctcgtagtaaattctttgaacgcatcctcgatttgtttaactgtc 355 Query: 460 gttttgttatccacaagaaggtaatttgttttcttgcgcagatcaacattgccaacccca 519 || ||||| || || || ||||| || ||||||||||||||||||||||||||||| || Sbjct: 354 gtcttgttgtcgacgaggaggtagttggttttcttgcgcagatcaacattgccaacgccg 295 Query: 520 gccatcaaaaacccagtaacagtgtcctcatcagcgatgatggcgatgagcgcggagttg 579 |||||||| || ||||| || |||||||| || |||||||| |||||||| ||||||||| Sbjct: 294 gccatcaagaagccagtgacggtgtcctcgtcggcgatgattgcgatgagggcggagttg 235 Query: 580 ttcgccgggatattggacctccccgccat 608 || | ||||| |||| |||||||||||| Sbjct: 234 ttagtggggatgttggccctccccgccat 206
>gb|BT012798.1| Lycopersicon esculentum clone 113812R, mRNA sequence Length = 772 Score = 200 bits (101), Expect = 4e-48 Identities = 245/293 (83%) Strand = Plus / Minus Query: 289 ggatcatatggatggtccttggatgggatttccaatatcgcagggattggcttgttgtag 348 |||||||||||||||||||| || || || ||||| || || || ||||| |||||||| Sbjct: 430 ggatcatatggatggtcctttgaaggaatctccaaaatggctggaattggtttgttgtaa 371 Query: 349 ctatccaccagaaatctaatcatgtttgcaatatattggctgatgagcacaatagcaata 408 ||||| |||| |||||| |||||||| || | |||||||||||| | ||| || || || Sbjct: 370 ctatcaaccaaaaatcttatcatgttggccacatattggctgatcaacactattgcgatg 311 Query: 409 tcctcccttgcagtaaattctttaaatgcatcttcaatctgtttcactgtggttttgtta 468 ||||| |||| || ||||| ||||| |||||||||||||| |||||||| ||||| | Sbjct: 310 tcctctcttgtggtgaattccttaaaagcatcttcaatctgcttcactgttgtttttgaa 251 Query: 469 tccacaagaaggtaatttgttttcttgcgcagatcaacattgccaaccccagccatcaaa 528 ||||||| |||||||||||||||| | | || ||||||||||||||| ||||||| ||| Sbjct: 250 tccacaataaggtaatttgttttcctcctcaaatcaacattgccaactccagccagtaaa 191 Query: 529 aacccagtaacagtgtcctcatcagcgatgatggcgatgagcgcggagttgtt 581 || ||||||| ||||||||||||||||| ||||| ||||| || |||||||| Sbjct: 190 aatccagtaattgtgtcctcatcagcgatcatggcaatgagggctgagttgtt 138
>gb|DQ317309.1| Musa acuminata putative vacuolar ATP synthase subunit F mRNA, partial cds Length = 386 Score = 182 bits (92), Expect = 1e-42 Identities = 242/292 (82%) Strand = Plus / Minus Query: 260 tcacacgagaaaggaccgaatcacttgctggatcatatggatggtccttggatgggattt 319 |||| |||||||| |||||||| ||| || ||||||||||| |||||||| || || | Sbjct: 382 tcactcgagaaagaaccgaatcgtgtgcagggtcatatggatgatccttggagggaatct 323 Query: 320 ccaatatcgcagggattggcttgttgtagctatccaccagaaatctaatcatgtttgcaa 379 |||| || || || | || ||||||||||||||||||||||| | ||||||||||||| Sbjct: 322 ccaagatagctggcacaggtttgttgtagctatccaccagaaaccgtatcatgtttgcaa 263 Query: 380 tatattggctgatgagcacaatagcaatatcctcccttgcagtaaattctttaaatgcat 439 |||||||| | || ||||||| ||||||||||||||||| || || ||||| ||||||| Sbjct: 262 tatattggataatcagcacaacagcaatatcctcccttgaggtgaactctttgaatgcat 203 Query: 440 cttcaatctgtttcactgtggttttgttatccacaagaaggtaatttgttttcttgcgca 499 ||| || |||||| || ||||| ||||||| |||||||||||| || | || | Sbjct: 202 cttttatagctttcacagtagtttttgagtccacaataaggtaatttgtctttctccgta 143 Query: 500 gatcaacattgccaaccccagccatcaaaaacccagtaacagtgtcctcatc 551 ||||||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct: 142 gatcaacatcgccaactccagccatcaaaaatccagtaacagtgtcctcatc 91
>ref|NM_116496.3| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational mechanism / hydrogen-transporting ATPase, rotational mechanism AT4G02620 mRNA, complete cds Length = 636 Score = 127 bits (64), Expect = 5e-26 Identities = 268/336 (79%) Strand = Plus / Minus Query: 244 gcagaaaatagatacttcacacgagaaaggaccgaatcacttgctggatcatatggatgg 303 |||||||| || ||||| |||||||| || || |||||| || |||||||| |||||| Sbjct: 443 gcagaaaagaggtacttgacacgagagagaactgaatcatgagcaggatcatagggatgg 384 Query: 304 tccttggatgggatttccaatatcgcagggattggcttgttgtagctatccaccagaaat 363 |||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| || Sbjct: 383 tccttggaagggatctccaagattgcaggaactggcttgttgtagctatccaccaagaac 324 Query: 364 ctaatcatgtttgcaatatattggctgatgagcacaatagcaatatcctcccttgcagta 423 | ||||| || || ||||||||||| | || | ||||| ||||| |||||||| | Sbjct: 323 cggatcatattggcgatatattggcttaaaagaatgatagcgatatcatcccttgctgag 264 Query: 424 aattctttaaatgcatcttcaatctgtttcactgtggttttgttatccacaagaaggtaa 483 ||||| || || ||||| ||||| ||| |||| || || || |||||| | |||||| Sbjct: 263 aattccttgaaagcatcctcaatttgtctcacagttgtctttgaatccacgatgaggtaa 204 Query: 484 tttgttttcttgcgcagatcaacattgccaaccccagccatcaaaaacccagtaacagtg 543 ||||| ||| | | | |||||||| ||||| |||||||||||||| ||| ||||||| Sbjct: 203 tttgtcttcctccttatgtcaacattaccaactccagccatcaaaaatccaacaacagtg 144 Query: 544 tcctcatcagcgatgatggcgatgagcgcggagttg 579 |||||||| ||||| || |||||||| || |||||| Sbjct: 143 tcctcatcggcgatcattgcgatgagggcagagttg 108
>gb|AY117236.1| Arabidopsis thaliana putative vacuolar ATPase (At4g02620) mRNA, complete cds Length = 418 Score = 127 bits (64), Expect = 5e-26 Identities = 268/336 (79%) Strand = Plus / Minus Query: 244 gcagaaaatagatacttcacacgagaaaggaccgaatcacttgctggatcatatggatgg 303 |||||||| || ||||| |||||||| || || |||||| || |||||||| |||||| Sbjct: 365 gcagaaaagaggtacttgacacgagagagaactgaatcatgagcaggatcatagggatgg 306 Query: 304 tccttggatgggatttccaatatcgcagggattggcttgttgtagctatccaccagaaat 363 |||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| || Sbjct: 305 tccttggaagggatctccaagattgcaggaactggcttgttgtagctatccaccaagaac 246 Query: 364 ctaatcatgtttgcaatatattggctgatgagcacaatagcaatatcctcccttgcagta 423 | ||||| || || ||||||||||| | || | ||||| ||||| |||||||| | Sbjct: 245 cggatcatattggcgatatattggcttaaaagaatgatagcgatatcatcccttgctgag 186 Query: 424 aattctttaaatgcatcttcaatctgtttcactgtggttttgttatccacaagaaggtaa 483 ||||| || || ||||| ||||| ||| |||| || || || |||||| | |||||| Sbjct: 185 aattccttgaaagcatcctcaatttgtctcacagttgtctttgaatccacgatgaggtaa 126 Query: 484 tttgttttcttgcgcagatcaacattgccaaccccagccatcaaaaacccagtaacagtg 543 ||||| ||| | | | |||||||| ||||| |||||||||||||| ||| ||||||| Sbjct: 125 tttgtcttcctccttatgtcaacattaccaactccagccatcaaaaatccaacaacagtg 66 Query: 544 tcctcatcagcgatgatggcgatgagcgcggagttg 579 |||||||| ||||| || |||||||| || |||||| Sbjct: 65 tcctcatcggcgatcattgcgatgagggcagagttg 30
>gb|AY065277.1| Arabidopsis thaliana putative vacuolar ATPase (At4g02620) mRNA, complete cds Length = 619 Score = 127 bits (64), Expect = 5e-26 Identities = 268/336 (79%) Strand = Plus / Minus Query: 244 gcagaaaatagatacttcacacgagaaaggaccgaatcacttgctggatcatatggatgg 303 |||||||| || ||||| |||||||| || || |||||| || |||||||| |||||| Sbjct: 419 gcagaaaagaggtacttgacacgagagagaactgaatcatgagcaggatcatagggatgg 360 Query: 304 tccttggatgggatttccaatatcgcagggattggcttgttgtagctatccaccagaaat 363 |||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| || Sbjct: 359 tccttggaagggatctccaagattgcaggaactggcttgttgtagctatccaccaagaac 300 Query: 364 ctaatcatgtttgcaatatattggctgatgagcacaatagcaatatcctcccttgcagta 423 | ||||| || || ||||||||||| | || | ||||| ||||| |||||||| | Sbjct: 299 cggatcatattggcgatatattggcttaaaagaatgatagcgatatcatcccttgctgag 240 Query: 424 aattctttaaatgcatcttcaatctgtttcactgtggttttgttatccacaagaaggtaa 483 ||||| || || ||||| ||||| ||| |||| || || || |||||| | |||||| Sbjct: 239 aattccttgaaagcatcctcaatttgtctcacagttgtctttgaatccacgatgaggtaa 180 Query: 484 tttgttttcttgcgcagatcaacattgccaaccccagccatcaaaaacccagtaacagtg 543 ||||| ||| | | | |||||||| ||||| |||||||||||||| ||| ||||||| Sbjct: 179 tttgtcttcctccttatgtcaacattaccaactccagccatcaaaaatccaacaacagtg 120 Query: 544 tcctcatcagcgatgatggcgatgagcgcggagttg 579 |||||||| ||||| || |||||||| || |||||| Sbjct: 119 tcctcatcggcgatcattgcgatgagggcagagttg 84
>emb|BX828935.1|CNS0A3F5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL52ZE03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 612 Score = 127 bits (64), Expect = 5e-26 Identities = 268/336 (79%) Strand = Plus / Minus Query: 244 gcagaaaatagatacttcacacgagaaaggaccgaatcacttgctggatcatatggatgg 303 |||||||| || ||||| |||||||| || || |||||| || |||||||| |||||| Sbjct: 443 gcagaaaagaggtacttgacacgagagagaactgaatcatgagcaggatcatagggatgg 384 Query: 304 tccttggatgggatttccaatatcgcagggattggcttgttgtagctatccaccagaaat 363 |||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| || Sbjct: 383 tccttggaagggatctccaagattgcaggaactggcttgttgtagctatccaccaagaac 324 Query: 364 ctaatcatgtttgcaatatattggctgatgagcacaatagcaatatcctcccttgcagta 423 | ||||| || || ||||||||||| | || | ||||| ||||| |||||||| | Sbjct: 323 cggatcatattggcgatatattggcttaaaagaatgatagcgatatcatcccttgctgag 264 Query: 424 aattctttaaatgcatcttcaatctgtttcactgtggttttgttatccacaagaaggtaa 483 ||||| || || ||||| ||||| ||| |||| || || || |||||| | |||||| Sbjct: 263 aattccttgaaagcatcctcaatttgtctcacagttgtctttgaatccacgatgaggtaa 204 Query: 484 tttgttttcttgcgcagatcaacattgccaaccccagccatcaaaaacccagtaacagtg 543 ||||| ||| | | | |||||||| ||||| |||||||||||||| ||| ||||||| Sbjct: 203 tttgtcttcctccttatgtcaacattaccaactccagccatcaaaaatccaacaacagtg 144 Query: 544 tcctcatcagcgatgatggcgatgagcgcggagttg 579 |||||||| ||||| || |||||||| || |||||| Sbjct: 143 tcctcatcggcgatcattgcgatgagggcagagttg 108
>gb|AY084277.1| Arabidopsis thaliana clone 10207 mRNA, complete sequence Length = 600 Score = 127 bits (64), Expect = 5e-26 Identities = 268/336 (79%) Strand = Plus / Minus Query: 244 gcagaaaatagatacttcacacgagaaaggaccgaatcacttgctggatcatatggatgg 303 |||||||| || ||||| |||||||| || || |||||| || |||||||| |||||| Sbjct: 440 gcagaaaagaggtacttgacacgagagagaactgaatcatgagcaggatcatagggatgg 381 Query: 304 tccttggatgggatttccaatatcgcagggattggcttgttgtagctatccaccagaaat 363 |||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| || Sbjct: 380 tccttggaagggatctccaagattgcaggaactggcttgttgtagctatccaccaagaac 321 Query: 364 ctaatcatgtttgcaatatattggctgatgagcacaatagcaatatcctcccttgcagta 423 | ||||| || || ||||||||||| | || | ||||| ||||| |||||||| | Sbjct: 320 cggatcatattggcgatatattggcttaaaagaatgatagcgatatcatcccttgctgag 261 Query: 424 aattctttaaatgcatcttcaatctgtttcactgtggttttgttatccacaagaaggtaa 483 ||||| || || ||||| ||||| ||| |||| || || || |||||| | |||||| Sbjct: 260 aattccttgaaagcatcctcaatttgtctcacagttgtctttgaatccacgatgaggtaa 201 Query: 484 tttgttttcttgcgcagatcaacattgccaaccccagccatcaaaaacccagtaacagtg 543 ||||| ||| | | | |||||||| ||||| |||||||||||||| ||| ||||||| Sbjct: 200 tttgtcttcctccttatgtcaacattaccaactccagccatcaaaaatccaacaacagtg 141 Query: 544 tcctcatcagcgatgatggcgatgagcgcggagttg 579 |||||||| ||||| || |||||||| || |||||| Sbjct: 140 tcctcatcggcgatcattgcgatgagggcagagttg 105
>emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095E20, complete sequence Length = 138572 Score = 121 bits (61), Expect = 3e-24 Identities = 139/165 (84%) Strand = Plus / Minus Query: 215 ctcaacgcctatcagaagcaaccgagtcagcagaaaatagatacttcacacgagaaagga 274 |||| |||||||| || || || || ||||| |||||||| |||||||| |||||||||| Sbjct: 117573 ctcatcgcctatctgacgccactgattcagcggaaaataggtacttcacgcgagaaagga 117514 Query: 275 ccgaatcacttgctggatcatatggatggtccttggatgggatttccaatatcgcaggga 334 | ||||| |||||| ||||| ||||| ||||| ||||| || |||||||| ||||| | Sbjct: 117513 cagaatcgtgtgctgggtcataaggatgatccttcgatggaatctccaatatagcaggaa 117454 Query: 335 ttggcttgttgtagctatccaccagaaatctaatcatgtttgcaa 379 || |||||||||||||||| |||||||||||||||||||||| Sbjct: 117453 ccggtctgttgtagctatccacaagaaatctaatcatgtttgcaa 117409 Score = 71.9 bits (36), Expect = 3e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 464 tgttatccacaagaaggtaatttgttttcttgcgcagatcaacattgccaaccccagcca 523 ||||||| |||| ||| |||||||| || || | |||||||||||||||||| ||||||| Sbjct: 116190 tgttatcaacaataagataatttgtctttttcctcagatcaacattgccaactccagcca 116131 Query: 524 tcaaaaacccagtaacagtgtcct 547 | |||||||||| || ||||||| Sbjct: 116130 actaaaacccagtcaccgtgtcct 116107 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 381 atattggctgatgagcacaatagcaatatcctcccttgcagtaaattctttaaatgcatc 440 |||||| |||||||| ||||| ||||| |||||||||| ||| || || ||||| ||||| Sbjct: 116886 atattgactgatgagtacaattgcaatgtcctcccttgtagtgaactccttaaacgcatc 116827 Query: 441 ttcaatctgtttcactgtggttt 463 |||||| ||||| ||||| |||| Sbjct: 116826 ttcaatttgtttgactgttgttt 116804 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 553 gcgatgatggcgatgagcgcggagttgttcgccgggatattggacctccccgccat 608 |||||||||||||||||||| ||| |||| | |||||| ||| |||||||||||| Sbjct: 114827 gcgatgatggcgatgagcgcagagctgttggtcgggatgctgggcctccccgccat 114772
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 121 bits (61), Expect = 3e-24 Identities = 139/165 (84%) Strand = Plus / Minus Query: 215 ctcaacgcctatcagaagcaaccgagtcagcagaaaatagatacttcacacgagaaagga 274 |||| |||||||| || || || || ||||| |||||||| |||||||| |||||||||| Sbjct: 2501671 ctcatcgcctatctgacgccactgattcagcggaaaataggtacttcacgcgagaaagga 2501612 Query: 275 ccgaatcacttgctggatcatatggatggtccttggatgggatttccaatatcgcaggga 334 | ||||| |||||| ||||| ||||| ||||| ||||| || |||||||| ||||| | Sbjct: 2501611 cagaatcgtgtgctgggtcataaggatgatccttcgatggaatctccaatatagcaggaa 2501552 Query: 335 ttggcttgttgtagctatccaccagaaatctaatcatgtttgcaa 379 || |||||||||||||||| |||||||||||||||||||||| Sbjct: 2501551 ccggtctgttgtagctatccacaagaaatctaatcatgtttgcaa 2501507 Score = 79.8 bits (40), Expect = 1e-11 Identities = 73/84 (86%) Strand = Plus / Minus Query: 464 tgttatccacaagaaggtaatttgttttcttgcgcagatcaacattgccaaccccagcca 523 ||||||| |||| ||| |||||||| || || | |||||||||||||||||| ||||||| Sbjct: 2500288 tgttatcaacaataagataatttgtctttttcctcagatcaacattgccaactccagcca 2500229 Query: 524 tcaaaaacccagtaacagtgtcct 547 |||||||||||| || ||||||| Sbjct: 2500228 acaaaaacccagtcaccgtgtcct 2500205 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 381 atattggctgatgagcacaatagcaatatcctcccttgcagtaaattctttaaatgcatc 440 |||||| |||||||| ||||| ||||| |||||||||| ||| || || ||||| ||||| Sbjct: 2500984 atattgactgatgagtacaattgcaatgtcctcccttgtagtgaactccttaaacgcatc 2500925 Query: 441 ttcaatctgtttcactgtggttt 463 |||||| ||||| ||||| |||| Sbjct: 2500924 ttcaatttgtttgactgttgttt 2500902 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 553 gcgatgatggcgatgagcgcggagttgttcgccgggatattggacctccccgccat 608 |||||||||||||||||||| ||| |||| | |||||| ||| |||||||||||| Sbjct: 2498925 gcgatgatggcgatgagcgcagagctgttggtcgggatgctgggcctccccgccat 2498870
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 119 bits (60), Expect = 1e-23 Identities = 135/160 (84%) Strand = Plus / Minus Query: 220 cgcctatcagaagcaaccgagtcagcagaaaatagatacttcacacgagaaaggaccgaa 279 |||||||| || || ||||| ||||||||||| || |||||||| |||||||| || ||| Sbjct: 35448851 cgcctatctgatgccaccgattcagcagaaaacaggtacttcacgcgagaaagaacagaa 35448792 Query: 280 tcacttgctggatcatatggatggtccttggatgggatttccaatatcgcagggattggc 339 || |||||| ||||| ||||| |||||||||||||| |||||||| ||||| | ||| Sbjct: 35448791 tcgtgtgctgggtcatacggatgatccttggatgggatctccaatatagcaggaacgggc 35448732 Query: 340 ttgttgtagctatccaccagaaatctaatcatgtttgcaa 379 ||||||||||||||||||| || || |||||||| |||| Sbjct: 35448731 ctgttgtagctatccaccaggaaccttatcatgttcgcaa 35448692 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 464 tgttatccacaagaaggtaatttgttttcttgcgcagatcaacattgccaaccccagcca 523 ||||||| |||| |||||||||||| || || | |||||||||||||||||| ||||||| Sbjct: 35447306 tgttatcaacaataaggtaatttgtctttttcctcagatcaacattgccaactccagcca 35447247 Query: 524 tcaaaaacccagtaacagtgtcct 547 |||||||||||| || ||||||| Sbjct: 35447246 acaaaaacccagtgaccgtgtcct 35447223 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 381 atattggctgatgagcacaatagcaatatcctcccttgcagtaaattctttaaatgcatc 440 ||||||||||||||| ||||| ||||| |||||||||| ||| ||||| ||||||||||| Sbjct: 35448022 atattggctgatgagaacaattgcaatgtcctcccttgtagtgaattccttaaatgcatc 35447963 Query: 441 ttcaatctgtttcactgtggttt 463 ||| || ||||| ||||| |||| Sbjct: 35447962 ttcgatttgtttgactgttgttt 35447940 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 553 gcgatgatggcgatgagcgcggagttgttcgccgggatattggacctccccgccat 608 ||||||||||||||||| |||||| |||| | |||||| ||| |||||||||||| Sbjct: 35446425 gcgatgatggcgatgagagcggagctgttggtcgggatgctgggcctccccgccat 35446370
>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1063_D06 Length = 102439 Score = 119 bits (60), Expect = 1e-23 Identities = 135/160 (84%) Strand = Plus / Minus Query: 220 cgcctatcagaagcaaccgagtcagcagaaaatagatacttcacacgagaaaggaccgaa 279 |||||||| || || ||||| ||||||||||| || |||||||| |||||||| || ||| Sbjct: 60372 cgcctatctgatgccaccgattcagcagaaaacaggtacttcacgcgagaaagaacagaa 60313 Query: 280 tcacttgctggatcatatggatggtccttggatgggatttccaatatcgcagggattggc 339 || |||||| ||||| ||||| |||||||||||||| |||||||| ||||| | ||| Sbjct: 60312 tcgtgtgctgggtcatacggatgatccttggatgggatctccaatatagcaggaacgggc 60253 Query: 340 ttgttgtagctatccaccagaaatctaatcatgtttgcaa 379 ||||||||||||||||||| || || |||||||| |||| Sbjct: 60252 ctgttgtagctatccaccaggaaccttatcatgttcgcaa 60213 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 464 tgttatccacaagaaggtaatttgttttcttgcgcagatcaacattgccaaccccagcca 523 ||||||| |||| |||||||||||| || || | |||||||||||||||||| ||||||| Sbjct: 58827 tgttatcaacaataaggtaatttgtctttttcctcagatcaacattgccaactccagcca 58768 Query: 524 tcaaaaacccagtaacagtgtcct 547 |||||||||||| || ||||||| Sbjct: 58767 acaaaaacccagtgaccgtgtcct 58744 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 381 atattggctgatgagcacaatagcaatatcctcccttgcagtaaattctttaaatgcatc 440 ||||||||||||||| ||||| ||||| |||||||||| ||| ||||| ||||||||||| Sbjct: 59543 atattggctgatgagaacaattgcaatgtcctcccttgtagtgaattccttaaatgcatc 59484 Query: 441 ttcaatctgtttcactgtggttt 463 ||| || ||||| ||||| |||| Sbjct: 59483 ttcgatttgtttgactgttgttt 59461 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 553 gcgatgatggcgatgagcgcggagttgttcgccgggatattggacctccccgccat 608 ||||||||||||||||| |||||| |||| | |||||| ||| |||||||||||| Sbjct: 57946 gcgatgatggcgatgagagcggagctgttggtcgggatgctgggcctccccgccat 57891
>ref|NM_116495.2| Arabidopsis thaliana tryptophan synthase AT4G02610 mRNA, complete cds Length = 1216 Score = 93.7 bits (47), Expect = 7e-16 Identities = 98/115 (85%) Strand = Plus / Plus Query: 244 gcagaaaatagatacttcacacgagaaaggaccgaatcacttgctggatcatatggatgg 303 |||||||| || ||||| |||||||| || || |||||| || |||||||| |||||| Sbjct: 1080 gcagaaaagaggtacttgacacgagagagaactgaatcatgagcaggatcatagggatgg 1139 Query: 304 tccttggatgggatttccaatatcgcagggattggcttgttgtagctatccacca 358 |||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| Sbjct: 1140 tccttggaagggatctccaagattgcaggaactggcttgttgtagctatccacca 1194
>gb|AC002330.1| Arabidopsis thaliana BAC T10P11 from chromosome IV, near 15 cM, complete sequence Length = 113566 Score = 93.7 bits (47), Expect = 7e-16 Identities = 98/115 (85%) Strand = Plus / Minus Query: 244 gcagaaaatagatacttcacacgagaaaggaccgaatcacttgctggatcatatggatgg 303 |||||||| || ||||| |||||||| || || |||||| || |||||||| |||||| Sbjct: 61653 gcagaaaagaggtacttgacacgagagagaactgaatcatgagcaggatcatagggatgg 61594 Query: 304 tccttggatgggatttccaatatcgcagggattggcttgttgtagctatccacca 358 |||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| Sbjct: 61593 tccttggaagggatctccaagattgcaggaactggcttgttgtagctatccacca 61539 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 502 tcaacattgccaaccccagccatcaaaaacccagtaacagtgtcct 547 |||||||| ||||| |||||||||||||| ||| ||||||||||| Sbjct: 60724 tcaacattaccaactccagccatcaaaaatccaacaacagtgtcct 60679
>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6 Length = 194892 Score = 93.7 bits (47), Expect = 7e-16 Identities = 98/115 (85%) Strand = Plus / Plus Query: 244 gcagaaaatagatacttcacacgagaaaggaccgaatcacttgctggatcatatggatgg 303 |||||||| || ||||| |||||||| || || |||||| || |||||||| |||||| Sbjct: 185092 gcagaaaagaggtacttgacacgagagagaactgaatcatgagcaggatcatagggatgg 185151 Query: 304 tccttggatgggatttccaatatcgcagggattggcttgttgtagctatccacca 358 |||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| Sbjct: 185152 tccttggaagggatctccaagattgcaggaactggcttgttgtagctatccacca 185206 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 502 tcaacattgccaaccccagccatcaaaaacccagtaacagtgtcct 547 |||||||| ||||| |||||||||||||| ||| ||||||||||| Sbjct: 186021 tcaacattaccaactccagccatcaaaaatccaacaacagtgtcct 186066
>ref|XM_471237.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 84 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 527 aaaacccagtaacagtgtcctcatcagcgatgatggcgatgagcgcggagttgttcgccg 586 |||||||||| || |||||||| || |||||||||||||||||||| ||| |||| | || Sbjct: 82 aaaacccagtcaccgtgtcctcgtcggcgatgatggcgatgagcgcagagctgttggtcg 23 Query: 587 ggatattggacctccccgccat 608 |||| ||| |||||||||||| Sbjct: 22 ggatgctgggcctccccgccat 1
>gb|DQ198167.1| Nicotiana tabacum cultivar Samsun NN vacuolar ATP-related protein mRNA, partial cds Length = 455 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 289 ggatcatatggatggtccttggatgggatttccaatatcgcagggattggcttgttgtag 348 |||||||||||||||||||| || || || |||| || || || ||||| || |||||| Sbjct: 123 ggatcatatggatggtcctttgaaggaatctccagaatggctggaattggtttattgtag 64 Query: 349 ctatccaccagaaatctaatcatgtttgcaatatattggctgat 392 ||||| |||| ||||| ||||||||||| | |||||||||||| Sbjct: 63 ctatcaaccaagaatctgatcatgtttgcgacatattggctgat 20
>dbj|AP006681.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45D03, TM0375b, complete sequence Length = 61653 Score = 61.9 bits (31), Expect = 3e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 289 ggatcatatggatggtccttggatgggatttccaatatcgcagggattggcttgttgtag 348 |||||||| || ||||| ||||| || || |||||||| ||||| | |||||||||||| Sbjct: 1259 ggatcataagggtggtctttggagggaatctccaatattgcaggaacaggcttgttgtag 1318 Query: 349 ctatccaccagaaatctaatcatgtttgcaa 379 ||||| || ||||| || ||||| ||||||| Sbjct: 1319 ctatcaactagaaaccttatcatatttgcaa 1349 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Plus Query: 403 gcaatatcctcccttgcagtaaattctttaaatgcatcttcaatctgttt 452 |||||||| ||||||| || || ||||| |||||||||||||| ||||| Sbjct: 1637 gcaatatcttcccttgttgtgaactctttgaatgcatcttcaatttgttt 1686
>emb|CR751234.13| Zebrafish DNA sequence from clone DKEY-164M14 in linkage group 20 Contains the gene for a novel protein similar to vertebrate bromodomain containing 1 (BRD1), the gene for a novel protein similar to vertebrate asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase) (ALG12), the gene for a novel protein similar to vertebrate solute carrier family 6 (neurotransmitter transporter, GABA), member 1 (SLC6A1), the gene for a novel protein similar to vertebrate zinc finger, BED domain containing 4 (ZBED4), the gene for a novel protein similar to vertebrate cysteine-rich with EGF-like domains 1 (CRELD1) (zgc:66383) and three CpG islands, complete sequence Length = 218596 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 113 cacaacagaatggcatgaataatttaatacagat 146 ||||||||||||||| ||||||| |||||||||| Sbjct: 171365 cacaacagaatggcaggaataatataatacagat 171398
>emb|BX004862.9| Zebrafish DNA sequence from clone DKEY-200M9 in linkage group 4 Contains the gene for a novel protein similar to vertebrate TAFA protein 5 (TAFA5) and a CpG island, complete sequence Length = 174359 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 113 cacaacagaatggcatgaataatttaatacagat 146 ||||||||||||||| ||||||| |||||||||| Sbjct: 136790 cacaacagaatggcaggaataatataatacagat 136757
>ref|XM_969923.1| PREDICTED: Tribolium castaneum similar to CG8210-PA (LOC663894), mRNA Length = 372 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 283 cttgctgg-atcatatggatggtccttggatgggatttccaatatcgcagggattgg 338 |||||||| |||||||||||||||||| || || |||||||| | ||||||||||| Sbjct: 318 cttgctggcatcatatggatggtcctttgacggaatttccaagacagcagggattgg 262
>ref|XM_715957.1| Candida albicans SC5314 vacuolar membrane ATPase subunit F (CaO19_8424), mRNA Length = 369 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 289 ggatcatatggatggtccttggatgggatttc 320 |||||||| |||||||| |||||||||||||| Sbjct: 320 ggatcatacggatggtctttggatgggatttc 289
>gb|AY426266.1| Solanum tarijense blight resistance protein T118 gene, partial cds Length = 3641 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 238 gagtcagcagaaaatagatact 259 |||||||||||||||||||||| Sbjct: 1165 gagtcagcagaaaatagatact 1144
>gb|AC009461.5|AC009461 Drosophila melanogaster, chromosome 3R, region 90B-90C, BAC clone BACR11L13, complete sequence Length = 171612 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 atctaatcatgtttgcaatata 383 |||||||||||||||||||||| Sbjct: 144003 atctaatcatgtttgcaatata 144024
>gb|AC009742.4|AC009742 Drosophila melanogaster, chromosome 3R, region 90C-90C, BAC clone BACR21K03, complete sequence Length = 178100 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 atctaatcatgtttgcaatata 383 |||||||||||||||||||||| Sbjct: 78516 atctaatcatgtttgcaatata 78537
>gb|AE003718.3| Drosophila melanogaster chromosome 3R, section 56 of 118 of the complete sequence Length = 253101 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 atctaatcatgtttgcaatata 383 |||||||||||||||||||||| Sbjct: 178660 atctaatcatgtttgcaatata 178681
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 aaattctttaaatgcatcttc 443 ||||||||||||||||||||| Sbjct: 357400 aaattctttaaatgcatcttc 357420
>ref|XM_445592.1| Candida glabrata CBS138, CAGL0D04048g partial mRNA Length = 357 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 292 tcatatggatggtccttggatgggatttc 320 ||||||||||||||||| ||||| ||||| Sbjct: 305 tcatatggatggtccttagatggaatttc 277
>emb|AL627230.15| Human DNA sequence from clone RP11-12A20 on chromosome 9 Contains six novel pseudogenes, the FAM27B gene for family with sequence similarity 27, member B, a pseudogene similar to part of ribosomal protein L10 (RPL10) and four CpG islands, complete sequence Length = 194246 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 atgttttcctgtttcccttgt 22 ||||||||||||||||||||| Sbjct: 29055 atgttttcctgtttcccttgt 29075
>emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chromosome 9 Contains the FAM27C gene for family with sequence similarity 27, member C, three novel genes, five novel pseudogenes and six CpG islands, complete sequence Length = 202081 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 atgttttcctgtttcccttgt 22 ||||||||||||||||||||| Sbjct: 93586 atgttttcctgtttcccttgt 93606
>emb|AL034349.3|HS86D1 Human DNA sequence from clone RP1-86D1 on chromosome 6q22.2-23.1 Contains two novel genes and the 5' end of the PTPRK gene for protein tyrosine phosphatase, receptor type K (R-PTP-KAPPA) and a CpG island, complete sequence Length = 112604 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 taatttaatacagatacatgg 152 ||||||||||||||||||||| Sbjct: 81094 taatttaatacagatacatgg 81074
>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence Length = 651701 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 292 tcatatggatggtccttggatgggatttc 320 ||||||||||||||||| ||||| ||||| Sbjct: 403187 tcatatggatggtccttagatggaatttc 403215
>gb|AC024451.8| Homo sapiens chromosome 11, clone RP11-697N18, complete sequence Length = 159791 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 656 tgaaagcaggaatcacaggca 676 ||||||||||||||||||||| Sbjct: 127437 tgaaagcaggaatcacaggca 127417
>emb|BX649557.8| Zebrafish DNA sequence from clone DKEYP-61G11 in linkage group 3, complete sequence Length = 163934 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 taaattctttaaatgcatcttcaat 446 |||||||||||||| |||||||||| Sbjct: 35643 taaattctttaaattcatcttcaat 35667
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 2867837 tgcatcttcaatctgtttca 2867856
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 gagcgcggagttgttcgccg 586 |||||||||||||||||||| Sbjct: 2192345 gagcgcggagttgttcgccg 2192364
>ref|XM_715837.1| Candida albicans SC5314 vacuolar H(+)-ATPase (CaO19_806), mRNA Length = 369 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 289 ggatcatatggatggtccttggatgggatttc 320 |||||||| ||||| || |||||||||||||| Sbjct: 320 ggatcatacggatgatctttggatgggatttc 289
>gb|AC154675.2| Mus musculus BAC clone RP23-143J5 from chromosome 14, complete sequence Length = 207264 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 655 atgaaagcaggaatcacagg 674 |||||||||||||||||||| Sbjct: 113308 atgaaagcaggaatcacagg 113327
>gb|AC158625.9| Mus musculus 6 BAC RP23-78J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 246705 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gcagtaaattctttaaatgc 437 |||||||||||||||||||| Sbjct: 83599 gcagtaaattctttaaatgc 83618
>gb|AC119853.9| Mus musculus chromosome 16, clone RP23-231E23, complete sequence Length = 236274 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 aacccgctggtccaatccag 87 |||||||||||||||||||| Sbjct: 29718 aacccgctggtccaatccag 29699
>ref|XM_755580.1| Ustilago maydis 521 hypothetical protein (UM04526.1) partial mRNA Length = 2340 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 548 catcagcgatgatggcgatgagcgcgga 575 |||| |||||||||||||||||| |||| Sbjct: 1830 catcggcgatgatggcgatgagcacgga 1857
>gb|AC122878.4| Mus musculus BAC clone RP23-116F15 from chromosome 14, complete sequence Length = 226611 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 aataatttaatacagatacatgga 153 |||||||||||| ||||||||||| Sbjct: 7854 aataatttaataaagatacatgga 7877
>gb|AC124462.2| Mus musculus BAC clone RP24-146O4 from chromosome 14, complete sequence Length = 133903 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 655 atgaaagcaggaatcacagg 674 |||||||||||||||||||| Sbjct: 127594 atgaaagcaggaatcacagg 127613
>gb|AC006974.2| Homo sapiens PAC clone RP5-958B11 from 7, complete sequence Length = 90241 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tcccttgttctaatatccaa 34 |||||||||||||||||||| Sbjct: 58332 tcccttgttctaatatccaa 58313
>gb|AC107769.7| Mus musculus chromosome 16, clone RP23-130N20, complete sequence Length = 192682 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacccgctggtccaatccag 87 |||||||||||||||||||| Sbjct: 42044 aacccgctggtccaatccag 42063
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 3183669 tgcatcttcaatctgtttca 3183688
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 3062671 tgcatcttcaatctgtttca 3062690
>emb|AL589645.10| Human DNA sequence from clone RP11-251H13 on chromosome 9, complete sequence Length = 48323 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 tcacttgctggatcatatgg 299 |||||||||||||||||||| Sbjct: 42069 tcacttgctggatcatatgg 42088
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 2906237 tgcatcttcaatctgtttca 2906256
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 567 gagcgcggagttgttcgccg 586 |||||||||||||||||||| Sbjct: 2182384 gagcgcggagttgttcgccg 2182365
>gb|DQ443526.1| Agrobacterium vitis NADP-me gene, partial cds; AvsR (avsR), AvsI (avsI), and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 5445 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 ttgcgcagatcaacattgcc 512 |||||||||||||||||||| Sbjct: 4592 ttgcgcagatcaacattgcc 4611
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 2906871 tgcatcttcaatctgtttca 2906890
>gb|AC026343.17| Homo sapiens 3 BAC RP11-384F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168615 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 ggcatgaataatttaatacagata 147 |||||| ||||||||||||||||| Sbjct: 20545 ggcatgcataatttaatacagata 20522
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 acagatacatggagcaggaa 160 |||||||||||||||||||| Sbjct: 404286 acagatacatggagcaggaa 404267
>gb|AC140675.5| Mus musculus BAC clone RP23-44J10 from chromosome 5, complete sequence Length = 229269 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 tacagatacatggagcaggaagtc 163 |||| ||||||||||||||||||| Sbjct: 194644 tacatatacatggagcaggaagtc 194621
>gb|AC133645.5| Mus musculus BAC clone RP23-73O10 from chromosome 5, complete sequence Length = 207846 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 tacagatacatggagcaggaagtc 163 |||| ||||||||||||||||||| Sbjct: 10638 tacatatacatggagcaggaagtc 10615
>gb|AC142455.4| Mus musculus BAC clone RP23-179B15 from chromosome 14, complete sequence Length = 207514 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 aataatttaatacagatacatgga 153 |||||||||||| ||||||||||| Sbjct: 97536 aataatttaataaagatacatgga 97513
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 tatggatggtccttggatgg 314 |||||||||||||||||||| Sbjct: 2098945 tatggatggtccttggatgg 2098964
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 2862541 tgcatcttcaatctgtttca 2862560
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 acagatacatggagcaggaa 160 |||||||||||||||||||| Sbjct: 156124 acagatacatggagcaggaa 156105
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 acagatacatggagcaggaa 160 |||||||||||||||||||| Sbjct: 44487 acagatacatggagcaggaa 44468
>emb|AL929523.5| Zebrafish DNA sequence from clone CH211-250I3, complete sequence Length = 133678 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 aaattctttaaatgcatcttcaat 446 ||||||||||||| |||||||||| Sbjct: 122531 aaattctttaaattcatcttcaat 122554
>gb|U29580.1|ECU29580 Escherichia coli K-12 genome; approximately 62 minute region Length = 13234 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 6080 tgcatcttcaatctgtttca 6099
>emb|CT030150.14| Mouse DNA sequence from clone RP23-414I13 on chromosome 14, complete sequence Length = 105716 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 655 atgaaagcaggaatcacagg 674 |||||||||||||||||||| Sbjct: 93238 atgaaagcaggaatcacagg 93257
>gb|AC145610.4| Mus musculus BAC clone RP24-281O20 from 18, complete sequence Length = 182640 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 452 tcactgtggttttgttatccacaa 475 ||||||| |||||||||||||||| Sbjct: 52671 tcactgttgttttgttatccacaa 52694
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 3697912 tgcatcttcaatctgtttca 3697931
>dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-119P12, complete sequence Length = 186978 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tgtttcactgtggttttgtt 467 |||||||||||||||||||| Sbjct: 170442 tgtttcactgtggttttgtt 170423
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 3630614 tgcatcttcaatctgtttca 3630633
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 2764195 tgcatcttcaatctgtttca 2764214
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 2664928 tgcatcttcaatctgtttca 2664947
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 3077942 tgcatcttcaatctgtttca 3077961
>gb|M12843.1|ECOPYRG E.coli pyrG (complete cds) and eno (partial cds) mRNAs encoding CTP synthetase and enolase, respectively Length = 2442 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tgcatcttcaatctgtttca 454 |||||||||||||||||||| Sbjct: 1802 tgcatcttcaatctgtttca 1783
>dbj|AP003496.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1786D2 Length = 150409 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ggttttgttatccacaagaa 478 |||||||||||||||||||| Sbjct: 68672 ggttttgttatccacaagaa 68653
>dbj|AP000874.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-760N9, complete sequences Length = 150638 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tgtttcactgtggttttgtt 467 |||||||||||||||||||| Sbjct: 43603 tgtttcactgtggttttgtt 43584 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,507,486 Number of Sequences: 3902068 Number of extensions: 6507486 Number of successful extensions: 134690 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134069 Number of HSP's gapped (non-prelim): 618 length of query: 684 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 661 effective length of database: 17,143,297,704 effective search space: 11331719782344 effective search space used: 11331719782344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)