Clone Name | rbah63g16 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK120928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035P13, full insert sequence Length = 4399 Score = 394 bits (199), Expect = e-106 Identities = 286/315 (90%) Strand = Plus / Minus Query: 229 gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288 |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| || Sbjct: 3774 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 3715 Query: 289 accgcgccaaaggatcttgtcaattaccccaaactccttggctttcaaagagtccatata 348 ||| |||||||||||||||||||| || ||||||||||| || ||||| || |||||||| Sbjct: 3714 accacgccaaaggatcttgtcaatgacaccaaactcctttgccttcaaggaatccatata 3655 Query: 349 aaacggtcctctcatcaccttgtctattttctccggtggatttccagtgtgccttgctaa 408 ||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 3654 aaatggtcctctcatcaccttgtctattttctctggtggattccccgtgtgccttgctaa 3595 Query: 409 aagtttgaccaaggtgttcctgttgtgcacgacctctttcgcacgaataacaacatcaga 468 |||| | || |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 3594 aagtctcactaaggtgttcctgttgtgcacaacctctttcgcccgaataacaacatcaga 3535 Query: 469 ggcttgcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatgggg 528 ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| || Sbjct: 3534 tgcttgcatcattccatatgaagggatacgaggttgctgaatcatagctttggcatgagg 3475 Query: 529 aaacatatatcgttt 543 |||||||| ||||| Sbjct: 3474 gaacatatagcgttt 3460
>gb|AY112158.1| Zea mays CL4569_1 mRNA sequence Length = 1108 Score = 303 bits (153), Expect = 3e-79 Identities = 216/237 (91%) Strand = Plus / Minus Query: 229 gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288 |||||| ||||| |||||||| || || |||||||||||||| | ||||||||||||||| Sbjct: 626 gactccggcaactttgtcccactcatctggggagagcatgtcagccatgtacttctcctg 567 Query: 289 accgcgccaaaggatcttgtcaattaccccaaactccttggctttcaaagagtccatata 348 |||||||||||||||||||||||| || ||||||||||| || ||||| |||||||| || Sbjct: 566 accgcgccaaaggatcttgtcaatgactccaaactcctttgccttcaaggagtccatgta 507 Query: 349 aaacggtcctctcatcaccttgtctattttctccggtggatttccagtgtgccttgctaa 408 ||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 506 aaatggtcctctcattaccttgtctattttctctggtggatttccagtatgccttgctaa 447 Query: 409 aagtttgaccaaggtgttcctgttgtgcacgacctctttcgcacgaataacaacatc 465 |||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| Sbjct: 446 aagtttgaccaatgtgttcctgttgtgcacaacctcctttgcacgaataacaacatc 390
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 115 bits (58), Expect = 2e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 440 acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 499 ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct: 12829977 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 12830036 Query: 500 ggttgctgaatcaaagct 517 ||||||||||||| |||| Sbjct: 12830037 ggttgctgaatcatagct 12830054 Score = 103 bits (52), Expect = 6e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 304 cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 363 ||||||||| || ||||||||||| || ||||| || ||||||||||| ||||||||||| Sbjct: 12829616 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 12829675 Query: 364 caccttgtctattttctccggtgg 387 |||||||||||||||||| ||||| Sbjct: 12829676 caccttgtctattttctctggtgg 12829699 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 229 gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288 |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| || Sbjct: 12829294 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 12829353 Query: 289 accgcgccaaaggatct 305 ||| ||||||||||||| Sbjct: 12829354 accacgccaaaggatct 12829370 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 395 gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 443 |||||||||||||||||| | || |||||||||||||||||||| |||| Sbjct: 12829786 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 12829834
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 115 bits (58), Expect = 2e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 440 acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 499 ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct: 68193 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 68252 Query: 500 ggttgctgaatcaaagct 517 ||||||||||||| |||| Sbjct: 68253 ggttgctgaatcatagct 68270 Score = 103 bits (52), Expect = 6e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 304 cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 363 ||||||||| || ||||||||||| || ||||| || ||||||||||| ||||||||||| Sbjct: 67832 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 67891 Query: 364 caccttgtctattttctccggtgg 387 |||||||||||||||||| ||||| Sbjct: 67892 caccttgtctattttctctggtgg 67915 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 229 gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288 |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| || Sbjct: 67510 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 67569 Query: 289 accgcgccaaaggatct 305 ||| ||||||||||||| Sbjct: 67570 accacgccaaaggatct 67586 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 395 gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 443 |||||||||||||||||| | || |||||||||||||||||||| |||| Sbjct: 68002 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 68050
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0094H06, from chromosome 3, complete sequence Length = 118075 Score = 115 bits (58), Expect = 2e-22 Identities = 73/78 (93%) Strand = Plus / Minus Query: 440 acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 499 ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct: 109532 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 109473 Query: 500 ggttgctgaatcaaagct 517 ||||||||||||| |||| Sbjct: 109472 ggttgctgaatcatagct 109455 Score = 103 bits (52), Expect = 6e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 304 cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 363 ||||||||| || ||||||||||| || ||||| || ||||||||||| ||||||||||| Sbjct: 109893 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 109834 Query: 364 caccttgtctattttctccggtgg 387 |||||||||||||||||| ||||| Sbjct: 109833 caccttgtctattttctctggtgg 109810 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 229 gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288 |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| || Sbjct: 110215 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 110156 Query: 289 accgcgccaaaggatct 305 ||| ||||||||||||| Sbjct: 110155 accacgccaaaggatct 110139 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 395 gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 443 |||||||||||||||||| | || |||||||||||||||||||| |||| Sbjct: 109723 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 109675
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 115 bits (58), Expect = 2e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 440 acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 499 ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct: 12826740 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 12826799 Query: 500 ggttgctgaatcaaagct 517 ||||||||||||| |||| Sbjct: 12826800 ggttgctgaatcatagct 12826817 Score = 103 bits (52), Expect = 6e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 304 cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 363 ||||||||| || ||||||||||| || ||||| || ||||||||||| ||||||||||| Sbjct: 12826379 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 12826438 Query: 364 caccttgtctattttctccggtgg 387 |||||||||||||||||| ||||| Sbjct: 12826439 caccttgtctattttctctggtgg 12826462 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 229 gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288 |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| || Sbjct: 12826057 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 12826116 Query: 289 accgcgccaaaggatct 305 ||| ||||||||||||| Sbjct: 12826117 accacgccaaaggatct 12826133 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 395 gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 443 |||||||||||||||||| | || |||||||||||||||||||| |||| Sbjct: 12826549 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 12826597
>gb|DQ226829.1| Boechera divaricarpa isolate SLW-C-A05 mRNA sequence Length = 672 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 287 tgaccgcgccaaaggatcttgtcaattaccccaaa 321 |||||||||||||| ||||||||||| |||||||| Sbjct: 324 tgaccgcgccaaagaatcttgtcaatgaccccaaa 290 Score = 46.1 bits (23), Expect = 0.12 Identities = 71/87 (81%) Strand = Plus / Minus Query: 439 gacctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacg 498 ||||||||| |||||||||| |||||| ||| |||||| |||| | ||||| | ||| Sbjct: 172 gacctctttggcacgaataaggacatcactggcaggcatcaacccagaagaaggcacacg 113 Query: 499 aggttgctgaatcaaagctttggcatg 525 ||||||||| |||| ||||| ||||| Sbjct: 112 aggttgctggatcattgctttagcatg 86
>gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete sequence Length = 123800 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 280 cttctcctgaccgcgccaaaggatct 305 ||||||||||||||||||||| |||| Sbjct: 94246 cttctcctgaccgcgccaaagaatct 94271
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 28 ttgctacacttattttagggcagag 52 ||||||||||||||||||| ||||| Sbjct: 26297568 ttgctacacttattttaggacagag 26297544
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aaaatttatactaacttaata 21 ||||||||||||||||||||| Sbjct: 62999 aaaatttatactaacttaata 62979
>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:P0491E01 Length = 136150 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 28 ttgctacacttattttagggcagag 52 ||||||||||||||||||| ||||| Sbjct: 29920 ttgctacacttattttaggacagag 29896
>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0012J10 Length = 132375 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 28 ttgctacacttattttagggcagag 52 ||||||||||||||||||| ||||| Sbjct: 120409 ttgctacacttattttaggacagag 120385
>ref|NM_001035931.1| Arabidopsis thaliana endopeptidase Clp AT1G09130 transcript variant AT1G09130.2 mRNA, complete cds Length = 1180 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 783 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 732
>ref|NM_100782.3| Arabidopsis thaliana endopeptidase Clp AT1G09130 transcript variant AT1G09130.1 mRNA, complete cds Length = 1356 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
>gb|AC120420.11| Mus musculus chromosome 5, clone RP24-481P22, complete sequence Length = 213649 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 aatttatactaacttaatactaaatttg 30 |||| |||||||||| |||||||||||| Sbjct: 80370 aattgatactaacttgatactaaatttg 80343
>ref|NM_188892.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3158 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 aagagtccatataaaacggt 355 |||||||||||||||||||| Sbjct: 3003 aagagtccatataaaacggt 2984
>ref|XM_507204.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1484_G09.129-1 mRNA Length = 3539 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 aagagtccatataaaacggt 355 |||||||||||||||||||| Sbjct: 3268 aagagtccatataaaacggt 3249
>gb|AC125346.4| Mus musculus BAC clone RP24-87B17 from chromosome 5, complete sequence Length = 187912 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 3 aatttatactaacttaatactaaatttg 30 |||| |||||||||| |||||||||||| Sbjct: 113023 aattgatactaacttgatactaaatttg 113050
>gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, complete sequence Length = 178111 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ctcaaaggcctaactaggta 186 |||||||||||||||||||| Sbjct: 139393 ctcaaaggcctaactaggta 139374
>gb|AC122172.30| Medicago truncatula clone mth2-27e7, complete sequence Length = 109532 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 taaatttgctacacttattt 42 |||||||||||||||||||| Sbjct: 88519 taaatttgctacacttattt 88500
>emb|Y17872.1|EAY17872 Eubacterium acidaminophilum orfS, orfR, orfX, grdG and grdF genes Length = 5160 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 accggggcctcggactccag 236 |||||||||||||||||||| Sbjct: 973 accggggcctcggactccag 992
>gb|AC079841.10| Homo sapiens 3 BAC RP11-10G15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167865 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaatttatactaacttaat 20 |||||||||||||||||||| Sbjct: 160626 aaaatttatactaacttaat 160607
>gb|AY136442.1| Arabidopsis thaliana ATP-dependent Clp protease proteolytic subunit (ClpR3), putative (At1g09130) mRNA, complete cds Length = 1246 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
>ref|NM_059999.2| Caenorhabditis elegans T08G11.4 (T08G11.4) mRNA, complete cds Length = 1878 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 caaactccttggctttcaaa 337 |||||||||||||||||||| Sbjct: 1543 caaactccttggctttcaaa 1524
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 aagagtccatataaaacggt 355 |||||||||||||||||||| Sbjct: 16957740 aagagtccatataaaacggt 16957759
>emb|BX842538.1|CNS0ADRO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB46ZF07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1235 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 763 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 712
>emb|BX842534.1|CNS0ADQM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB46ZE07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1236 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 763 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 712
>emb|BX842529.1|CNS0ADG1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB72ZD03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1248 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 763 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 712
>emb|BX842522.1|CNS0ACYL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS11ZB08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 757 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 238 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 187
>emb|BX842520.1|CNS0ACRW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS71ZG02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1189 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 740 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 689
>dbj|AK176771.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL25-32-B01 Length = 1256 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 775 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 724
>dbj|AK176714.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL25-25-N08 Length = 1301 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
>dbj|AK176592.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL25-11-P03 Length = 1309 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 783 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 732
>dbj|AK176591.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL25-11-N19 Length = 1306 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
>dbj|AK176445.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL24-21-F12 Length = 1310 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 774 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 723
>dbj|AK175935.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, partial cds, clone: RAFL22-61-D22 Length = 1225 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 690 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 639
>dbj|AK175858.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL22-48-B21 Length = 1317 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
>dbj|AK175857.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL22-48-A06 Length = 1317 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
>dbj|AK175767.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL22-33-L03 Length = 1257 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
>dbj|AK175337.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL21-78-C11 Length = 1258 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
>dbj|AK175317.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL21-76-C04 Length = 1301 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
>dbj|AK175123.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3, complete cds, clone: RAFL21-53-J08 Length = 1301 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 775 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 724
>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1484_G09 Length = 124695 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 aagagtccatataaaacggt 355 |||||||||||||||||||| Sbjct: 104751 aagagtccatataaaacggt 104770
>dbj|AK073703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055B18, full insert sequence Length = 3538 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 aagagtccatataaaacggt 355 |||||||||||||||||||| Sbjct: 3267 aagagtccatataaaacggt 3248
>dbj|AK070742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061C12, full insert sequence Length = 4317 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 aagagtccatataaaacggt 355 |||||||||||||||||||| Sbjct: 4169 aagagtccatataaaacggt 4150
>dbj|AK067572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108G24, full insert sequence Length = 3158 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 aagagtccatataaaacggt 355 |||||||||||||||||||| Sbjct: 3003 aagagtccatataaaacggt 2984
>gb|BT002132.1| Arabidopsis thaliana ATP-dependent Clp protease proteolytic subunit (ClpR3), putative (At1g09130) mRNA, complete cds Length = 1127 Score = 40.1 bits (20), Expect = 7.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525 |||||| |||| | ||||| | ||| ||||||||||||| ||||||||||| Sbjct: 733 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 682
>dbj|AK061683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A07, full insert sequence Length = 1704 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 aagagtccatataaaacggt 355 |||||||||||||||||||| Sbjct: 1559 aagagtccatataaaacggt 1540
>emb|Z80220.1|CET08G11 Caenorhabditis elegans Cosmid T08G11, complete sequence Length = 30919 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 caaactccttggctttcaaa 337 |||||||||||||||||||| Sbjct: 7090 caaactccttggctttcaaa 7109 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,048,234 Number of Sequences: 3902068 Number of extensions: 4048234 Number of successful extensions: 66674 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66422 Number of HSP's gapped (non-prelim): 252 length of query: 547 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 524 effective length of database: 17,143,297,704 effective search space: 8983087996896 effective search space used: 8983087996896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)