ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63g16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120928.1| Oryza sativa (japonica cultivar-group) cDNA clon... 394 e-106
2gb|AY112158.1| Zea mays CL4569_1 mRNA sequence 303 3e-79
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 2e-22
4gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 115 2e-22
5gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 115 2e-22
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
7gb|DQ226829.1| Boechera divaricarpa isolate SLW-C-A05 mRNA sequence 54 5e-04
8gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete se... 44 0.47
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
10gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 42 1.9
11dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
12dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
13ref|NM_001035931.1| Arabidopsis thaliana endopeptidase Clp AT1G0... 40 7.4
14ref|NM_100782.3| Arabidopsis thaliana endopeptidase Clp AT1G0913... 40 7.4
15gb|AC120420.11| Mus musculus chromosome 5, clone RP24-481P22, co... 40 7.4
16ref|NM_188892.2| Oryza sativa (japonica cultivar-group), mRNA 40 7.4
17ref|XM_507204.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.4
18gb|AC125346.4| Mus musculus BAC clone RP24-87B17 from chromosome... 40 7.4
19gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, com... 40 7.4
20gb|AC122172.30| Medicago truncatula clone mth2-27e7, complete se... 40 7.4
21emb|Y17872.1|EAY17872 Eubacterium acidaminophilum orfS, orfR, or... 40 7.4
22gb|AC079841.10| Homo sapiens 3 BAC RP11-10G15 (Roswell Park Canc... 40 7.4
23gb|AY136442.1| Arabidopsis thaliana ATP-dependent Clp protease p... 40 7.4
24ref|NM_059999.2| Caenorhabditis elegans T08G11.4 (T08G11.4) mRNA... 40 7.4
25dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
26emb|BX842538.1|CNS0ADRO Arabidopsis thaliana Full-length cDNA Co... 40 7.4
27emb|BX842534.1|CNS0ADQM Arabidopsis thaliana Full-length cDNA Co... 40 7.4
28emb|BX842529.1|CNS0ADG1 Arabidopsis thaliana Full-length cDNA Co... 40 7.4
29emb|BX842522.1|CNS0ACYL Arabidopsis thaliana Full-length cDNA Co... 40 7.4
30emb|BX842520.1|CNS0ACRW Arabidopsis thaliana Full-length cDNA Co... 40 7.4
31dbj|AK176771.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
32dbj|AK176714.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
33dbj|AK176592.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
34dbj|AK176591.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
35dbj|AK176445.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
36dbj|AK175935.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
37dbj|AK175858.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
38dbj|AK175857.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
39dbj|AK175767.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
40dbj|AK175337.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
41dbj|AK175317.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
42dbj|AK175123.1| Arabidopsis thaliana mRNA for ClpP protease comp... 40 7.4
43dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
44dbj|AK073703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
45dbj|AK070742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
46dbj|AK067572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
47gb|BT002132.1| Arabidopsis thaliana ATP-dependent Clp protease p... 40 7.4
48dbj|AK061683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
49emb|Z80220.1|CET08G11 Caenorhabditis elegans Cosmid T08G11, comp... 40 7.4 
>dbj|AK120928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035P13, full
            insert sequence
          Length = 4399

 Score =  394 bits (199), Expect = e-106
 Identities = 286/315 (90%)
 Strand = Plus / Minus

                                                                        
Query: 229  gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288
            |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||
Sbjct: 3774 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 3715

                                                                        
Query: 289  accgcgccaaaggatcttgtcaattaccccaaactccttggctttcaaagagtccatata 348
            ||| |||||||||||||||||||| || ||||||||||| || ||||| || ||||||||
Sbjct: 3714 accacgccaaaggatcttgtcaatgacaccaaactcctttgccttcaaggaatccatata 3655

                                                                        
Query: 349  aaacggtcctctcatcaccttgtctattttctccggtggatttccagtgtgccttgctaa 408
            ||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct: 3654 aaatggtcctctcatcaccttgtctattttctctggtggattccccgtgtgccttgctaa 3595

                                                                        
Query: 409  aagtttgaccaaggtgttcctgttgtgcacgacctctttcgcacgaataacaacatcaga 468
            |||| | || |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 3594 aagtctcactaaggtgttcctgttgtgcacaacctctttcgcccgaataacaacatcaga 3535

                                                                        
Query: 469  ggcttgcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatgggg 528
             ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct: 3534 tgcttgcatcattccatatgaagggatacgaggttgctgaatcatagctttggcatgagg 3475

                           
Query: 529  aaacatatatcgttt 543
             |||||||| |||||
Sbjct: 3474 gaacatatagcgttt 3460
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>gb|AY112158.1| Zea mays CL4569_1 mRNA sequence
          Length = 1108

 Score =  303 bits (153), Expect = 3e-79
 Identities = 216/237 (91%)
 Strand = Plus / Minus

                                                                       
Query: 229 gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288
           |||||| ||||| |||||||| || || |||||||||||||| | |||||||||||||||
Sbjct: 626 gactccggcaactttgtcccactcatctggggagagcatgtcagccatgtacttctcctg 567

                                                                       
Query: 289 accgcgccaaaggatcttgtcaattaccccaaactccttggctttcaaagagtccatata 348
           |||||||||||||||||||||||| || ||||||||||| || ||||| |||||||| ||
Sbjct: 566 accgcgccaaaggatcttgtcaatgactccaaactcctttgccttcaaggagtccatgta 507

                                                                       
Query: 349 aaacggtcctctcatcaccttgtctattttctccggtggatttccagtgtgccttgctaa 408
           ||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 506 aaatggtcctctcattaccttgtctattttctctggtggatttccagtatgccttgctaa 447

                                                                    
Query: 409 aagtttgaccaaggtgttcctgttgtgcacgacctctttcgcacgaataacaacatc 465
           |||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 446 aagtttgaccaatgtgttcctgttgtgcacaacctcctttgcacgaataacaacatc 390
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                            
Query: 440      acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 499
                ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 12829977 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 12830036

                                  
Query: 500      ggttgctgaatcaaagct 517
                ||||||||||||| ||||
Sbjct: 12830037 ggttgctgaatcatagct 12830054



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                            
Query: 304      cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 363
                ||||||||| || ||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 12829616 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 12829675

                                        
Query: 364      caccttgtctattttctccggtgg 387
                |||||||||||||||||| |||||
Sbjct: 12829676 caccttgtctattttctctggtgg 12829699



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                            
Query: 229      gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288
                |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||
Sbjct: 12829294 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 12829353

                                 
Query: 289      accgcgccaaaggatct 305
                ||| |||||||||||||
Sbjct: 12829354 accacgccaaaggatct 12829370



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 395      gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 443
                |||||||||||||||||| | || |||||||||||||||||||| ||||
Sbjct: 12829786 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 12829834
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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                         
Query: 440   acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 499
             ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 68193 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 68252

                               
Query: 500   ggttgctgaatcaaagct 517
             ||||||||||||| ||||
Sbjct: 68253 ggttgctgaatcatagct 68270



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                         
Query: 304   cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 363
             ||||||||| || ||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 67832 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 67891

                                     
Query: 364   caccttgtctattttctccggtgg 387
             |||||||||||||||||| |||||
Sbjct: 67892 caccttgtctattttctctggtgg 67915



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                         
Query: 229   gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288
             |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||
Sbjct: 67510 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 67569

                              
Query: 289   accgcgccaaaggatct 305
             ||| |||||||||||||
Sbjct: 67570 accacgccaaaggatct 67586



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                              
Query: 395   gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 443
             |||||||||||||||||| | || |||||||||||||||||||| ||||
Sbjct: 68002 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 68050
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>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                          
Query: 440    acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 499
              ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 109532 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 109473

                                
Query: 500    ggttgctgaatcaaagct 517
              ||||||||||||| ||||
Sbjct: 109472 ggttgctgaatcatagct 109455



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                          
Query: 304    cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 363
              ||||||||| || ||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 109893 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 109834

                                      
Query: 364    caccttgtctattttctccggtgg 387
              |||||||||||||||||| |||||
Sbjct: 109833 caccttgtctattttctctggtgg 109810



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                          
Query: 229    gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288
              |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||
Sbjct: 110215 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 110156

                               
Query: 289    accgcgccaaaggatct 305
              ||| |||||||||||||
Sbjct: 110155 accacgccaaaggatct 110139



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                               
Query: 395    gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 443
              |||||||||||||||||| | || |||||||||||||||||||| ||||
Sbjct: 109723 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 109675
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                            
Query: 440      acctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacga 499
                ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 12826740 acctctttcgcccgaataacaacatcagatgcttgcatcattccatatgaagggatacga 12826799

                                  
Query: 500      ggttgctgaatcaaagct 517
                ||||||||||||| ||||
Sbjct: 12826800 ggttgctgaatcatagct 12826817



 Score =  103 bits (52), Expect = 6e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                            
Query: 304      cttgtcaattaccccaaactccttggctttcaaagagtccatataaaacggtcctctcat 363
                ||||||||| || ||||||||||| || ||||| || ||||||||||| |||||||||||
Sbjct: 12826379 cttgtcaatgacaccaaactcctttgccttcaaggaatccatataaaatggtcctctcat 12826438

                                        
Query: 364      caccttgtctattttctccggtgg 387
                |||||||||||||||||| |||||
Sbjct: 12826439 caccttgtctattttctctggtgg 12826462



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                            
Query: 229      gactccagcaaccttgtcccaatcctcaggggagagcatgtccgacatgtacttctcctg 288
                |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||| ||
Sbjct: 12826057 gactccagcaactttgtcccattcctctggggagagcatgtcagccatgtacttctcttg 12826116

                                 
Query: 289      accgcgccaaaggatct 305
                ||| |||||||||||||
Sbjct: 12826117 accacgccaaaggatct 12826133



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 395      gtgtgccttgctaaaagtttgaccaaggtgttcctgttgtgcacgacct 443
                |||||||||||||||||| | || |||||||||||||||||||| ||||
Sbjct: 12826549 gtgtgccttgctaaaagtctcactaaggtgttcctgttgtgcacaacct 12826597
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>gb|DQ226829.1| Boechera divaricarpa isolate SLW-C-A05 mRNA sequence
          Length = 672

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 287 tgaccgcgccaaaggatcttgtcaattaccccaaa 321
           |||||||||||||| ||||||||||| ||||||||
Sbjct: 324 tgaccgcgccaaagaatcttgtcaatgaccccaaa 290



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                       
Query: 439 gacctctttcgcacgaataacaacatcagaggcttgcatcatcccatatgaaggaatacg 498
           ||||||||| ||||||||||  ||||||  |||  |||||| |||| | ||||| | |||
Sbjct: 172 gacctctttggcacgaataaggacatcactggcaggcatcaacccagaagaaggcacacg 113

                                      
Query: 499 aggttgctgaatcaaagctttggcatg 525
           ||||||||| ||||  ||||| |||||
Sbjct: 112 aggttgctggatcattgctttagcatg 86
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>gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete sequence
          Length = 123800

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 280   cttctcctgaccgcgccaaaggatct 305
             ||||||||||||||||||||| ||||
Sbjct: 94246 cttctcctgaccgcgccaaagaatct 94271
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 28       ttgctacacttattttagggcagag 52
                ||||||||||||||||||| |||||
Sbjct: 26297568 ttgctacacttattttaggacagag 26297544
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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     aaaatttatactaacttaata 21
             |||||||||||||||||||||
Sbjct: 62999 aaaatttatactaacttaata 62979
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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:P0491E01
          Length = 136150

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 28    ttgctacacttattttagggcagag 52
             ||||||||||||||||||| |||||
Sbjct: 29920 ttgctacacttattttaggacagag 29896
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>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0012J10
          Length = 132375

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 28     ttgctacacttattttagggcagag 52
              ||||||||||||||||||| |||||
Sbjct: 120409 ttgctacacttattttaggacagag 120385
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>ref|NM_001035931.1| Arabidopsis thaliana endopeptidase Clp AT1G09130 transcript variant
           AT1G09130.2 mRNA, complete cds
          Length = 1180

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 783 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 732
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>ref|NM_100782.3| Arabidopsis thaliana endopeptidase Clp AT1G09130 transcript variant
           AT1G09130.1 mRNA, complete cds
          Length = 1356

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
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>gb|AC120420.11| Mus musculus chromosome 5, clone RP24-481P22, complete sequence
          Length = 213649

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 3     aatttatactaacttaatactaaatttg 30
             |||| |||||||||| ||||||||||||
Sbjct: 80370 aattgatactaacttgatactaaatttg 80343
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>ref|NM_188892.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3158

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  aagagtccatataaaacggt 355
            ||||||||||||||||||||
Sbjct: 3003 aagagtccatataaaacggt 2984
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>ref|XM_507204.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1484_G09.129-1
            mRNA
          Length = 3539

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  aagagtccatataaaacggt 355
            ||||||||||||||||||||
Sbjct: 3268 aagagtccatataaaacggt 3249
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>gb|AC125346.4| Mus musculus BAC clone RP24-87B17 from chromosome 5, complete sequence
          Length = 187912

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 3      aatttatactaacttaatactaaatttg 30
              |||| |||||||||| ||||||||||||
Sbjct: 113023 aattgatactaacttgatactaaatttg 113050
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>gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, complete sequence
          Length = 178111

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ctcaaaggcctaactaggta 186
              ||||||||||||||||||||
Sbjct: 139393 ctcaaaggcctaactaggta 139374
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>gb|AC122172.30| Medicago truncatula clone mth2-27e7, complete sequence
          Length = 109532

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    taaatttgctacacttattt 42
             ||||||||||||||||||||
Sbjct: 88519 taaatttgctacacttattt 88500
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>emb|Y17872.1|EAY17872 Eubacterium acidaminophilum orfS, orfR, orfX, grdG and grdF genes
          Length = 5160

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 217 accggggcctcggactccag 236
           ||||||||||||||||||||
Sbjct: 973 accggggcctcggactccag 992
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>gb|AC079841.10| Homo sapiens 3 BAC RP11-10G15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167865

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aaaatttatactaacttaat 20
              ||||||||||||||||||||
Sbjct: 160626 aaaatttatactaacttaat 160607
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>gb|AY136442.1| Arabidopsis thaliana ATP-dependent Clp protease proteolytic subunit
           (ClpR3), putative (At1g09130) mRNA, complete cds
          Length = 1246

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
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>ref|NM_059999.2| Caenorhabditis elegans T08G11.4 (T08G11.4) mRNA, complete cds
          Length = 1878

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 318  caaactccttggctttcaaa 337
            ||||||||||||||||||||
Sbjct: 1543 caaactccttggctttcaaa 1524
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 336      aagagtccatataaaacggt 355
                ||||||||||||||||||||
Sbjct: 16957740 aagagtccatataaaacggt 16957759
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>emb|BX842538.1|CNS0ADRO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB46ZF07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1235

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 763 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 712
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>emb|BX842534.1|CNS0ADQM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB46ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1236

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 763 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 712
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>emb|BX842529.1|CNS0ADG1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB72ZD03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1248

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 763 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 712
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>emb|BX842522.1|CNS0ACYL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS11ZB08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 757

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 238 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 187
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>emb|BX842520.1|CNS0ACRW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS71ZG02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1189

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 740 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 689
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>dbj|AK176771.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-32-B01
          Length = 1256

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 775 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 724
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>dbj|AK176714.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-25-N08
          Length = 1301

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
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>dbj|AK176592.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-11-P03
          Length = 1309

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 783 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 732
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>dbj|AK176591.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL25-11-N19
          Length = 1306

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
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>dbj|AK176445.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL24-21-F12
          Length = 1310

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 774 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 723
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>dbj|AK175935.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           partial cds, clone: RAFL22-61-D22
          Length = 1225

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 690 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 639
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>dbj|AK175858.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL22-48-B21
          Length = 1317

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
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>dbj|AK175857.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL22-48-A06
          Length = 1317

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
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>dbj|AK175767.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL22-33-L03
          Length = 1257

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
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>dbj|AK175337.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL21-78-C11
          Length = 1258

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 770 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 719
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>dbj|AK175317.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL21-76-C04
          Length = 1301

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 771 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 720
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>dbj|AK175123.1| Arabidopsis thaliana mRNA for ClpP protease complex subunit ClpR3,
           complete cds, clone: RAFL21-53-J08
          Length = 1301

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 775 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 724
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>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1484_G09
          Length = 124695

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    aagagtccatataaaacggt 355
              ||||||||||||||||||||
Sbjct: 104751 aagagtccatataaaacggt 104770
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>dbj|AK073703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055B18, full
            insert sequence
          Length = 3538

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  aagagtccatataaaacggt 355
            ||||||||||||||||||||
Sbjct: 3267 aagagtccatataaaacggt 3248
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>dbj|AK070742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061C12, full
            insert sequence
          Length = 4317

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  aagagtccatataaaacggt 355
            ||||||||||||||||||||
Sbjct: 4169 aagagtccatataaaacggt 4150
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>dbj|AK067572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108G24, full
            insert sequence
          Length = 3158

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  aagagtccatataaaacggt 355
            ||||||||||||||||||||
Sbjct: 3003 aagagtccatataaaacggt 2984
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>gb|BT002132.1| Arabidopsis thaliana ATP-dependent Clp protease proteolytic subunit
           (ClpR3), putative (At1g09130) mRNA, complete cds
          Length = 1127

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 474 gcatcatcccatatgaaggaatacgaggttgctgaatcaaagctttggcatg 525
           |||||| |||| | ||||| | ||| |||||||||||||  |||||||||||
Sbjct: 733 gcatcaacccagaagaaggtacacgtggttgctgaatcatcgctttggcatg 682
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>dbj|AK061683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A07, full
            insert sequence
          Length = 1704

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  aagagtccatataaaacggt 355
            ||||||||||||||||||||
Sbjct: 1559 aagagtccatataaaacggt 1540
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>emb|Z80220.1|CET08G11 Caenorhabditis elegans Cosmid T08G11, complete sequence
          Length = 30919

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  caaactccttggctttcaaa 337
            ||||||||||||||||||||
Sbjct: 7090 caaactccttggctttcaaa 7109


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,048,234
Number of Sequences: 3902068
Number of extensions: 4048234
Number of successful extensions: 66674
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66422
Number of HSP's gapped (non-prelim): 252
length of query: 547
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 524
effective length of database: 17,143,297,704
effective search space: 8983087996896
effective search space used: 8983087996896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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