ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RUBR1_CHLTE (P58992) Rubredoxin 1 (Rd 1) 41 0.002
2RUBR2_PSEOL (P00272) Rubredoxin 2 (Two-iron rubredoxin) 37 0.043
3RUBR_METTH (O26258) Probable rubredoxin (RD) 35 0.21
4RUBR_SYNY3 (P73068) Rubredoxin (Rd) 35 0.21
5RUBR_PYRFU (P24297) Rubredoxin (Rd) 34 0.28
6RUBR_ANAVT (Q9XBL8) Rubredoxin (Rd) 33 0.48
7RUBR_PYRAB (Q9V099) Rubredoxin (Rd) 33 0.48
8OST2_RAT (Q80W66) Heparan sulfate glucosamine 3-O-sulfotransfera... 33 0.62
9OST2_MOUSE (Q673U1) Heparan sulfate glucosamine 3-O-sulfotransfe... 33 0.62
10RUBR_ANASP (Q9WWN1) Rubredoxin (Rd) 33 0.62
11RDRP_TVCV (Q88920) RNA-directed RNA polymerase (EC 2.7.7.48) (18... 33 0.81
12RUBR_DESVM (P15412) Rubredoxin (Rd) 32 1.4
13RUBR2_DESDE (Q93PP8) Rubredoxin 2 (Rd-2) 32 1.4
14LRP12_HUMAN (Q9Y561) Low-density lipoprotein receptor-related pr... 32 1.4
15DP2L_PYRHO (O57861) DNA polymerase II large subunit (EC 2.7.7.7)... 32 1.8
16LRP12_MACFA (Q9BE74) Low-density lipoprotein receptor-related pr... 32 1.8
17RUBR_DESVH (P00269) Rubredoxin (Rd) 31 2.4
18RUBR1_DESDE (P04170) Rubredoxin 1 (Rd-1) 31 2.4
19RUBL_BRAJA (P48344) Probable rubredoxin hupI 31 2.4
20SPRL_OCEIH (Q8ESK0) Protein sprT-like 31 2.4
21TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoi... 31 2.4
22ZN516_MOUSE (Q7TSH3) Zinc finger protein 516 31 3.1
23RUBR_HELMO (P56263) Rubredoxin (Rd) 31 3.1
24RUBR_DESGI (P00270) Rubredoxin (Rd) 31 3.1
25RAG1_HUMAN (P15918) V(D)J recombination-activating protein 1 (RA... 30 5.3
26COG3_YEAST (P40094) Conserved oligomeric Golgi complex component... 30 5.3
27FABZ_PSEPK (Q88MG9) (3R)-hydroxymyristoyl-[acyl carrier protein]... 30 6.9
28NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Si... 30 6.9
29HRB_MOOTA (Q9FDN6) High molecular weight rubredoxin (Nitric oxid... 30 6.9
30RUBR_CLOAB (Q9AL94) Rubredoxin (Rd) 30 6.9
31CDCP1_MOUSE (Q5U462) CUB domain-containing protein 1 precursor (... 29 9.0
32C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXV... 29 9.0
33CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-gluta... 29 9.0
34KV5L_MOUSE (P01645) Ig kappa chain V-V region HP 93G7 29 9.0
35HUPJ_RHOCA (Q03009) Probable rubredoxin hupJ 29 9.0
36ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7 29 9.0

>RUBR1_CHLTE (P58992) Rubredoxin 1 (Rd 1)|
          Length = 69

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 11/52 (21%)
 Frame = -1

Query: 355 RATHICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFARY 233
           +A+ +C +CGYIY   +           PF++ P ++ CP CN PK +F ++
Sbjct: 14  QASWMCAECGYIYDPAEGNLETNIRPGMPFDKLPDDWSCPVCNHPKNQFTKF 65



to top

>RUBR2_PSEOL (P00272) Rubredoxin 2 (Two-iron rubredoxin)|
          Length = 172

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
 Frame = -1

Query: 397 PPRFGRKLSDSQ--KARATHICLDCGYIY----------FLPKP-FEEQPGEYGCPQCNA 257
           PPR     SD+Q  KA    IC+ CG+IY          F P   FE+ P ++ CP C A
Sbjct: 107 PPR-----SDAQGGKAYLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 161

Query: 256 PKKRFARY 233
            K+ +  Y
Sbjct: 162 TKEDYVLY 169



to top

>RUBR_METTH (O26258) Probable rubredoxin (RD)|
          Length = 63

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
 Frame = -1

Query: 340 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 242
           C  CGYIY   K           PFE+ P  + CP C A KK F
Sbjct: 16  CRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMF 59



to top

>RUBR_SYNY3 (P73068) Rubredoxin (Rd)|
          Length = 115

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
 Frame = -1

Query: 367 SQKARATHICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 242
           ++ A   H C  CGY+Y   +           PFE  P  + CP C AP+  F
Sbjct: 11  AELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNYF 63



to top

>RUBR_PYRFU (P24297) Rubredoxin (Rd)|
          Length = 53

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
 Frame = -1

Query: 352 ATHICLDCGYIY----------FLP-KPFEEQPGEYGCPQCNAPKKRFAR 236
           A  +C  CGYIY            P   FEE P ++ CP C APK  F +
Sbjct: 1   AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEK 50



to top

>RUBR_ANAVT (Q9XBL8) Rubredoxin (Rd)|
          Length = 111

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 25/98 (25%)
 Frame = -1

Query: 340 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFA-----------RYNV 227
           C  CGY+Y   K           PF E P  + CP C A K  F+           R N+
Sbjct: 16  CRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGPAGTASGFRENL 75

Query: 226 ESGKPIGGALPPLTVIVSLVIGIAGIGALL---VYGLQ 122
             G  +    P    I  L+ G   +G L    +YGLQ
Sbjct: 76  GYGLGVNKLTPAQKNI--LIFGALALGFLFFISLYGLQ 111



to top

>RUBR_PYRAB (Q9V099) Rubredoxin (Rd)|
          Length = 53

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
 Frame = -1

Query: 340 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFAR 236
           C  CGYIY   +            FE+ P ++ CP C APK  F R
Sbjct: 6   CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFER 51



to top

>OST2_RAT (Q80W66) Heparan sulfate glucosamine 3-O-sulfotransferase 2 (EC|
           2.8.2.29) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 2) (Heparan sulfate
           3-O-sulfotransferase 2)
          Length = 367

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +2

Query: 380 PAKPRGRRPLGQALHINITTTPAYYKVYRVWLCLDGCLGESQLVCRPQLITEEAACVEHL 559
           P +PR  R L  A  ++++ T   Y  Y    C DG LG+S+L+  P+ +   +A  + L
Sbjct: 11  PPQPRRARRLLFAFTLSLSCT---YLCYSFLCCCDG-LGQSRLLGAPRCLRGPSASGQKL 66

Query: 560 VTRLEPC 580
           + +  PC
Sbjct: 67  LAKSRPC 73



to top

>OST2_MOUSE (Q673U1) Heparan sulfate glucosamine 3-O-sulfotransferase 2 (EC|
           2.8.2.29) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 2) (Heparan sulfate
           3-O-sulfotransferase 2)
          Length = 367

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +2

Query: 380 PAKPRGRRPLGQALHINITTTPAYYKVYRVWLCLDGCLGESQLVCRPQLITEEAACVEHL 559
           P +PR  R L  A  ++++ T   Y  Y    C DG LG+S+L+  P+ +   +A  + L
Sbjct: 11  PPQPRRARRLLFAFTLSLSCT---YLCYSFLCCCDG-LGQSRLLGAPRCLRGPSASGQKL 66

Query: 560 VTRLEPC 580
           + +  PC
Sbjct: 67  LAKSRPC 73



to top

>RUBR_ANASP (Q9WWN1) Rubredoxin (Rd)|
          Length = 111

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 25/98 (25%)
 Frame = -1

Query: 340 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFA-----------RYNV 227
           C  CGY+Y   K           PF E P  + CP C A K  F            R N+
Sbjct: 16  CRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGPAGTASGFRENL 75

Query: 226 ESGKPIGGALPPLTVIVSLVIGIAGIGALL---VYGLQ 122
             G  +    P    I  L+ G   +G L    +YGLQ
Sbjct: 76  GYGLGVNKLTPAQKNI--LIFGALALGFLFFISLYGLQ 111



to top

>RDRP_TVCV (Q88920) RNA-directed RNA polymerase (EC 2.7.7.48) (180 kDa protein)|
            [Contains: Methyltransferase/RNA helicase (MT/HEL) (125
            kDa protein)]
          Length = 1601

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 27/107 (25%), Positives = 44/107 (41%)
 Frame = -1

Query: 418  RLPKRPAPPRFGRKLSDSQKARATHICLDCGYIYFLPKPFEEQPGEYGCPQCNAPKKRFA 239
            R+   P P  F + ++D ++ R   +       YFL K ++      G   C +  +R  
Sbjct: 933  RVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYD------GAVMCTSAVERSV 986

Query: 238  RYNVESGKPIGGALPPLTVIVSLVIGIAGIGALLVYGLQ*AFSSLEK 98
            +  V  GK   GAL P+T+ +         G +L +     F  LEK
Sbjct: 987  KAEVVRGK---GALNPITLPLE--------GKILTFTQADKFELLEK 1022



to top

>RUBR_DESVM (P15412) Rubredoxin (Rd)|
          Length = 52

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
 Frame = -1

Query: 346 HICLDCGYIYFLP--------KP---FEEQPGEYGCPQCNAPKKRF 242
           ++C  CGY Y           KP   FE+ P ++ CP C APK  F
Sbjct: 4   YVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEF 49



to top

>RUBR2_DESDE (Q93PP8) Rubredoxin 2 (Rd-2)|
          Length = 61

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
 Frame = -1

Query: 337 LDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFARYNVES 221
           ++CGY+Y   +            FE+ P ++ CP C A KK F R + E+
Sbjct: 12  VNCGYVYDPDRGDKRRKVPAGTKFEDLPEDWRCPVCGAGKKSFRRLSDEA 61



to top

>LRP12_HUMAN (Q9Y561) Low-density lipoprotein receptor-related protein 12|
           precursor (Suppressor of tumorigenicity protein 7)
          Length = 859

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
 Frame = +3

Query: 327 PQSRQMCVALAFCESDNFRPNRGGAGLLGRRFTSISPPPLLTTKY--------TESGFAW 482
           P +  +   +  C S + +  RGG    GR  TS+ PP +   ++           G  W
Sbjct: 680 PPTTAVEATVGACASSSTQSTRGGHADNGRDVTSVEPPSVSPARHQLTSALSRMTQGLRW 739

Query: 483 MAVLVNPSLSAGHNSSPKKLL 545
           +   +  S S   N SP + L
Sbjct: 740 VRFTLGRSSSLSQNQSPLRQL 760



to top

>DP2L_PYRHO (O57861) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
            [Contains: Pho polC intein (Pho pol II intein)]
          Length = 1431

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 18/142 (12%)
 Frame = -1

Query: 520  WPADKLGFTKTAIQAK---PDSVYFVVSRGGGDI-DVKRLPKRPAPPRFGRKLSDSQKAR 353
            W   ++G  + A + K   P  V F +   GG   D+K+  +          L    K  
Sbjct: 648  WIGARMGRPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIALFKCPKCG 707

Query: 352  AT---HICLDCG----YIYFLPKPFEEQPGE------YGCPQCNAPKKRFARYNVESGKP 212
                 HIC +CG     I+  P+   E P        Y CP+CN   K +A+  ++  + 
Sbjct: 708  HVGPEHICPNCGTRKELIWVCPRCNAEYPESQASGYNYTCPKCNVKLKPYAKRKIKPSEL 767

Query: 211  IGGALPPLTVI-VSLVIGIAGI 149
            +  A+  + V  +  + G+ G+
Sbjct: 768  LKRAMDNVKVYGIDKLKGVMGM 789



to top

>LRP12_MACFA (Q9BE74) Low-density lipoprotein receptor-related protein 12|
           (Fragment)
          Length = 701

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
 Frame = +3

Query: 327 PQSRQMCVALAFCESDNFRPNRGGAGLLGRRFTSISPPPLLTTKY--------TESGFAW 482
           P +  +   +  C S + +  RGG    GR  TS+ PP +   ++           G  W
Sbjct: 522 PPTTAVEATVGACASSSTQSARGGHADNGRDVTSVEPPSVSPARHQLTSALSRMTQGLRW 581

Query: 483 MAVLVNPSLSAGHNSSPKKLL 545
           +   +  S S   N SP + L
Sbjct: 582 VRFTLGRSSSVSQNQSPLRQL 602



to top

>RUBR_DESVH (P00269) Rubredoxin (Rd)|
          Length = 52

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
 Frame = -1

Query: 346 HICLDCGYIYFLP--------KP---FEEQPGEYGCPQCNAPKKRF 242
           ++C  CGY Y           KP   F++ P ++ CP C APK  F
Sbjct: 4   YVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEF 49



to top

>RUBR1_DESDE (P04170) Rubredoxin 1 (Rd-1)|
          Length = 45

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 346 HICLDCGYIYFLPK----PFEEQPGEYGCPQCNAPKKRFA 239
           ++C  CGY Y   +    PF++ P ++ CP C   K +F+
Sbjct: 4   YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFS 43



to top

>RUBL_BRAJA (P48344) Probable rubredoxin hupI|
          Length = 69

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 304 PFEEQPGEYGCPQCNAPKKRF 242
           PF   P E+ CP C+APK +F
Sbjct: 44  PFAALPEEWHCPNCDAPKSKF 64



to top

>SPRL_OCEIH (Q8ESK0) Protein sprT-like|
          Length = 150

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -1

Query: 436 GDIDVKRLPKRPAPPRFGRKLSDSQKA-RATHICLDCGYIYFLPKPFEEQPGEYGCPQCN 260
           GD D K L K    PR    L   Q+  R  + C+ CG++Y   +    +  +Y C +C 
Sbjct: 87  GDRDFKELLKATGSPRHCSPLPSQQREYRYKYQCIQCGFVYKRVRKVNMR--KYRCGKCR 144

Query: 259 APKK 248
              K
Sbjct: 145 GSLK 148



to top

>TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)|
          Length = 1473

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 448  SRGGGDIDVKR-LPKRPAPPRFGRKLSDSQKARATHICLD 332
            ++ G  + VKR  PK+PAP +  +K S+S+   A++  +D
Sbjct: 1193 AKSGAAVKVKRQAPKKPAPKKTTKKASESETTEASYSAMD 1232



to top

>ZN516_MOUSE (Q7TSH3) Zinc finger protein 516|
          Length = 1157

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = -1

Query: 415 LPKRPAPPRFGRKLSDSQKARATHICLDCGYIY----FLPKPFEEQPGE--YGCPQCN 260
           L + P+PPR GR         A H C  CG  +     L +   +  GE  Y CP C+
Sbjct: 11  LRRGPSPPRAGRSHEVDGDKAACHSCCICGKSFPFQSSLSQHMRKHTGEKPYKCPYCD 68



to top

>RUBR_HELMO (P56263) Rubredoxin (Rd)|
          Length = 52

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 11/44 (25%)
 Frame = -1

Query: 340 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 242
           CL CGY+Y   K            FE+ P ++ CP C   K  F
Sbjct: 6   CLVCGYVYDPAKGDPDHGIAPGTAFEDLPADWVCPLCGVSKDEF 49



to top

>RUBR_DESGI (P00270) Rubredoxin (Rd)|
          Length = 52

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
 Frame = -1

Query: 346 HICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFAR 236
           ++C  CGY Y   K            FE+ P ++ CP C A K  F +
Sbjct: 4   YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEK 51



to top

>RAG1_HUMAN (P15918) V(D)J recombination-activating protein 1 (RAG-1) (RING|
           finger protein 74)
          Length = 1043

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
 Frame = -1

Query: 493 KTAIQAKP--DSVYFVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARA--------TH 344
           K + + KP  +    V+ +  G   V   P   A P+F +K  D++KAR          H
Sbjct: 50  KDSFEGKPSLEQSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRH 109

Query: 343 ICLDCG 326
           +C  CG
Sbjct: 110 LCRICG 115



to top

>COG3_YEAST (P40094) Conserved oligomeric Golgi complex component 3 (SEC34|
           protein)
          Length = 801

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 363 RRLEQHTSALIVDTYTFYPSPLKNSLVSTAVPSAMH 256
           R++ Q T A I +T T Y    K S ++ ++P A+H
Sbjct: 119 RKISQDTGAFIEETKTIYEKQSKLSNLTESIPKALH 154



to top

>FABZ_PSEPK (Q88MG9) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase|
           (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
          Length = 146

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
 Frame = +3

Query: 15  LPHHY*NFLLDRVHEKSVELVDAWPEQNFSRDEKAY*RPYTSKAPMPAMPITKLTITVRG 194
           LPH Y   L+DRV +   E       +N S +E  +   + +   MP +    L I    
Sbjct: 11  LPHRYPFLLVDRVTDLDFEAQSIRAYKNVSINEPFFNGHFPAHPIMPGV----LIIEAMA 66

Query: 195 GSAPPMGF-------PDSTLYLANRFFGA--LHWGQPYSPG----CSSKGLGRKYM 323
            +A  +GF        D TLY    F G+  L + QP  PG      +K L RK M
Sbjct: 67  QAAGILGFKMLDAKPADGTLYY---FVGSDKLRFRQPVLPGDQLVLEAKFLSRKSM 119



to top

>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator|
            of retinoic acid and thyroid hormone receptor) (SMRT)
            (SMRTe) (Thyroid-, retinoic-acid-receptor-associated
            corepressor) (T3 receptor-associating factor) (TRAC) (CTG
            repeat p
          Length = 2517

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 42/161 (26%), Positives = 60/161 (37%), Gaps = 25/161 (15%)
 Frame = +3

Query: 129  PYTSKAPMPAMPITKLTITVRGGSAPPMGF--PDSTLYLANRFFGALHWGQPYSPG---- 290
            P    AP+PA P+        G S P +    P S LYL     GA   G P+S G    
Sbjct: 2152 PQQLSAPLPA-PLYSFP----GASCPVLDLRRPPSDLYLPPPDHGAPARGSPHSEGGKRS 2206

Query: 291  -----CSSKGLGRKYMYP-----------QSRQMCVALAFCESDNFRPNRGGAGLLGRRF 422
                  S  G G   + P            SR     L + + +   P+R G+   G   
Sbjct: 2207 PEPNKTSVLGGGEDGIEPVSPPEGMTEPGHSRSAVYPLLYRDGEQTEPSRMGSKSPG--- 2263

Query: 423  TSISPPPLLTTKYTESGFAWMAVL---VNPSLSAGHNSSPK 536
             + S PP   +K TES  A +      +N  L+  + + P+
Sbjct: 2264 -NTSQPPAFFSKLTESNSAMVKSKKQEINKKLNTHNRNEPE 2303



to top

>HRB_MOOTA (Q9FDN6) High molecular weight rubredoxin (Nitric oxide reductase|
           NADH:FprA oxidoreductase)
          Length = 229

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
 Frame = -1

Query: 424 VKRLPKRPAPPRF--GRKLSDSQKARATHICLDCGYIY----------FLP-KPFEEQPG 284
           VKR       P F  GR+   +  A   + C  C Y+Y            P  PF + P 
Sbjct: 153 VKRGTTPKTAPTFTVGREKDKTALASPKYQCTICNYVYDPVQGDPEHGIAPGTPFADLPE 212

Query: 283 EYGCPQCNAPKKRF 242
           ++ CP C A K  F
Sbjct: 213 DWTCPICGAGKDAF 226



to top

>RUBR_CLOAB (Q9AL94) Rubredoxin (Rd)|
          Length = 54

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
 Frame = -1

Query: 346 HICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 242
           ++C+ CGYIY   +            FE+ P ++ CP C   K +F
Sbjct: 4   YVCVVCGYIYDPAEGDPDNGVNPGTSFEDIPDDWVCPLCGVGKDQF 49



to top

>CDCP1_MOUSE (Q5U462) CUB domain-containing protein 1 precursor (Transmembrane|
           and associated with src kinases) (Membrane glycoprotein
           gp140) (CD318 antigen)
          Length = 833

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
 Frame = -1

Query: 256 PKKRFARY----NVESGKPIGG---------ALPPLTVIVSLVIGIAGIGALLVYGL 125
           PK  F  +    N+ +  P+ G          L P TV +++VIG AG GALL++ L
Sbjct: 627 PKPSFHHHSFWVNISNCSPMNGKQLDLLFWVTLTPRTVDLAVVIGAAGGGALLLFAL 683



to top

>C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII)|
          Length = 547

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 487 AIQAKPDSVY---FVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARATHICL 335
           A+ A PD+     F+ S GG D+DV+ +  R AP   GR++   +    T + L
Sbjct: 449 AVWADPDAFAPERFLPSEGGADVDVRGVDLRLAPFGAGRRVCPGKNLGLTTVGL 502



to top

>CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-glutamate|
           methylesterase 2 (EC 3.1.1.61)
          Length = 373

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
 Frame = -1

Query: 487 AIQAKPDSVY--FVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARATHICLDCGYIYF 314
           A+  KPD +   + +    G   V+ + +R   P         + AR T   LD G + F
Sbjct: 44  ALALKPDVITMDYEMPMMDGITAVRHIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDF 103

Query: 313 LPKPFE------EQPGEYGCPQCNA---PKKRFARYNVESGKPIGGALP 194
           LPK FE      E+  +  C + ++     +RF+ Y+  + +P     P
Sbjct: 104 LPKNFEDISRNPEKVKQLLCEKVHSISRSNRRFSSYSAPAPQPASAPAP 152



to top

>KV5L_MOUSE (P01645) Ig kappa chain V-V region HP 93G7|
          Length = 108

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/62 (29%), Positives = 22/62 (35%)
 Frame = +3

Query: 219 PDSTLYLANRFFGALHWGQPYSPGCSSKGLGRKYMYPQSRQMCVALAFCESDNFRPNRGG 398
           PD T+ L   +   LH G P     S  G           Q  +A  FC+  N  P   G
Sbjct: 40  PDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGNMLPRTFG 99

Query: 399 AG 404
            G
Sbjct: 100 GG 101



to top

>HUPJ_RHOCA (Q03009) Probable rubredoxin hupJ|
          Length = 278

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 304 PFEEQPGEYGCPQCNAPKKRF 242
           PF   P ++ CP C+APK +F
Sbjct: 51  PFTALPEDWHCPNCDAPKAQF 71



to top

>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 482 PSKARLCILCSKQGWW*Y*CEAPAQE 405
           P K R C LCS++G   Y C AP  E
Sbjct: 258 PRKVRRCFLCSRRGHLLYSCPAPLCE 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,259,724
Number of Sequences: 219361
Number of extensions: 2286845
Number of successful extensions: 6961
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 6674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6948
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top