ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_189108.2| Oryza sativa (japonica cultivar-group), mRNA 323 4e-85
2ref|XM_507141.1| PREDICTED Oryza sativa (japonica cultivar-group... 323 4e-85
3dbj|AK070227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 4e-85
4dbj|AK060121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 4e-85
5gb|AY106565.1| Zea mays PCO096548 mRNA sequence 226 7e-56
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
7dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
8dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
9emb|CT571264.2| Medicago truncatula chromosome 5 clone mth2-146m... 100 1e-17
10dbj|AK060661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
11dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone... 84 6e-13
12ref|NM_121723.3| Arabidopsis thaliana electron transporter/ meta... 52 0.002
13gb|BT000984.1| Arabidopsis thaliana clone U09484 unknown protein... 52 0.002
14gb|AY035119.1| Arabidopsis thaliana unknown protein (At5g17170) ... 52 0.002
15emb|BX831408.1|CNS0A09X Arabidopsis thaliana Full-length cDNA Co... 52 0.002
16emb|BX830489.1|CNS0A065 Arabidopsis thaliana Full-length cDNA Co... 52 0.002
17emb|BX829838.1|CNS09ZY3 Arabidopsis thaliana Full-length cDNA Co... 52 0.002
18dbj|AB005238.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 52 0.002
19ref|NM_104894.2| Arabidopsis thaliana ATP binding / ATPase/ nucl... 42 2.1
20gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 42 2.1
21gb|AC000375.1|F19K23 Sequence of BAC F19K23 from Arabidopsis tha... 42 2.1
22gb|U26679.1|ABU26679 Azospirillum brasilense lateral flagellin (... 42 2.1
23gb|AC004227.1| Homo sapiens chromosome 5, P1 clone 356a8 (LBNL H... 40 8.1
24gb|AC137596.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
25gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, comp... 40 8.1
26gb|AC117615.11| Mus musculus chromosome 19, clone RP23-110D20, c... 40 8.1
27gb|AC117629.16| Mus musculus chromosome 19, clone RP23-179C21, c... 40 8.1
28emb|CR391905.6| Zebrafish DNA sequence from clone DKEY-16P7 in l... 40 8.1
29gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 8.1
30emb|AL356791.9| Human DNA sequence from clone RP11-80I3 on chrom... 40 8.1
31emb|AL035448.29|HS742J24 Human DNA sequence from clone RP4-742J2... 40 8.1
32ref|XM_781195.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.1
33emb|AL590629.16| Mouse DNA sequence from clone RP23-202F23 on ch... 40 8.1
34gb|AC023983.11| Homo sapiens chromosome 18, clone RP11-621L6, co... 40 8.1
35dbj|AK095052.1| Homo sapiens cDNA FLJ37733 fis, clone BRHIP2020827 40 8.1
36dbj|AK094349.1| Homo sapiens cDNA FLJ37030 fis, clone BRACE2011183 40 8.1
37gb|AC092547.7| Homo sapiens 3q BAC RP11-371L14 (Roswell Park Can... 40 8.1
38dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
39gb|AC157277.2| Mus musculus BAC clone RP23-465H15 from chromosom... 40 8.1
40gb|AC012449.7| Homo sapiens BAC clone RP11-321K13 from 2, comple... 40 8.1
41dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.1
42gb|AC106776.4| Homo sapiens chromosome 5 clone RP11-325M13, comp... 40 8.1
43dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
44dbj|BS000234.1| Pan troglodytes chromosome 22 clone:PTB-190I13, ... 40 8.1
45gb|AC134622.3| Mus musculus BAC clone RP23-13I7 from 6, complete... 40 8.1
46emb|BX927109.13| Zebrafish DNA sequence from clone CH211-80D23 i... 40 8.1
47emb|BX936417.8| Zebrafish DNA sequence from clone DKEY-231D7 in ... 40 8.1
48gb|AC007510.6|AC007510 Homo sapiens chromosome 17, clone hRPK.67... 40 8.1
49gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 8.1
50dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.1
51emb|AJ617740.1| Pseudomonas putida clc transposon 40 8.1
52gb|AC164567.5| Mus musculus BAC clone RP23-64B8 from chromosome ... 40 8.1
53dbj|AP001046.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 8.1

>ref|NM_189108.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 934

 Score =  323 bits (163), Expect = 4e-85
 Identities = 402/481 (83%), Gaps = 3/481 (0%)
 Strand = Plus / Minus

                                                                       
Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175
           |||||||||||||||||||||||||||||||||||  || || |||||||| | ||||||
Sbjct: 793 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 734

                                                                       
Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235
           ||| ||||| |||| |||||| || || || ||||| | | |||| |  ||| | |  ||
Sbjct: 733 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 674

                                                                       
Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctgttc 295
           | | ||||| |||||||||||||| ||||| || || ||||| || ||| ||||||||||
Sbjct: 673 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctgttc 614

                                                                       
Query: 296 ttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgttgctct 355
           ||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 613 ttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgttgctct 554

                                                                       
Query: 356 agccttctgtgaatcagacaacttccggccaaaccgagggggcgccggcctcttgggcag 415
           |||||| ||||| || | ||| ||||||||||| |  || ||||||||||| || || ||
Sbjct: 553 agccttttgtgattccgtcaatttccggccaaatctcggaggcgccggccttttcggaag 494

                                                                       
Query: 416 gcgcttcacatcaatatcaccaccacccctgcttactacaaagtatacagagtctggctt 475
            |||||||||||||   |     |||||||||| || |||||||| ||||||||||||||
Sbjct: 493 tcgcttcacatcaa---cttgtgcacccctgctaaccacaaagtagacagagtctggctt 437

                                                                       
Query: 476 tgcttggatggctgtcttggtgaatcccagcttgtctgccggccacaactcatcaccgaa 535
           ||| |||||||||||||||||||| |||||||| ||||| ||||| |  ||||| || ||
Sbjct: 436 tgcctggatggctgtcttggtgaaccccagcttatctgcaggccatagttcatctccaaa 377

                                                                       
Query: 536 gaagctgcttgtgtagagcacttggtcacccgacttgagccctgctcttgctgcattccc 595
           |||||| |||||||||||||| |||||||| || || || ||||||||||| || |||||
Sbjct: 376 gaagctacttgtgtagagcacctggtcacctgatttcaggcctgctcttgccgcgttccc 317

            
Query: 596 t 596
           |
Sbjct: 316 t 316



to top

>ref|XM_507141.1| PREDICTED Oryza sativa (japonica cultivar-group), P0577B11.138 mRNA
          Length = 1003

 Score =  323 bits (163), Expect = 4e-85
 Identities = 402/481 (83%), Gaps = 3/481 (0%)
 Strand = Plus / Minus

                                                                       
Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175
           |||||||||||||||||||||||||||||||||||  || || |||||||| | ||||||
Sbjct: 823 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 764

                                                                       
Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235
           ||| ||||| |||| |||||| || || || ||||| | | |||| |  ||| | |  ||
Sbjct: 763 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 704

                                                                       
Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctgttc 295
           | | ||||| |||||||||||||| ||||| || || ||||| || ||| ||||||||||
Sbjct: 703 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctgttc 644

                                                                       
Query: 296 ttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgttgctct 355
           ||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 643 ttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgttgctct 584

                                                                       
Query: 356 agccttctgtgaatcagacaacttccggccaaaccgagggggcgccggcctcttgggcag 415
           |||||| ||||| || | ||| ||||||||||| |  || ||||||||||| || || ||
Sbjct: 583 agccttttgtgattccgtcaatttccggccaaatctcggaggcgccggccttttcggaag 524

                                                                       
Query: 416 gcgcttcacatcaatatcaccaccacccctgcttactacaaagtatacagagtctggctt 475
            |||||||||||||   |     |||||||||| || |||||||| ||||||||||||||
Sbjct: 523 tcgcttcacatcaa---cttgtgcacccctgctaaccacaaagtagacagagtctggctt 467

                                                                       
Query: 476 tgcttggatggctgtcttggtgaatcccagcttgtctgccggccacaactcatcaccgaa 535
           ||| |||||||||||||||||||| |||||||| ||||| ||||| |  ||||| || ||
Sbjct: 466 tgcctggatggctgtcttggtgaaccccagcttatctgcaggccatagttcatctccaaa 407

                                                                       
Query: 536 gaagctgcttgtgtagagcacttggtcacccgacttgagccctgctcttgctgcattccc 595
           |||||| |||||||||||||| |||||||| || || || ||||||||||| || |||||
Sbjct: 406 gaagctacttgtgtagagcacctggtcacctgatttcaggcctgctcttgccgcgttccc 347

            
Query: 596 t 596
           |
Sbjct: 346 t 346



to top

>dbj|AK070227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041B21, full
           insert sequence
          Length = 934

 Score =  323 bits (163), Expect = 4e-85
 Identities = 402/481 (83%), Gaps = 3/481 (0%)
 Strand = Plus / Minus

                                                                       
Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175
           |||||||||||||||||||||||||||||||||||  || || |||||||| | ||||||
Sbjct: 793 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 734

                                                                       
Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235
           ||| ||||| |||| |||||| || || || ||||| | | |||| |  ||| | |  ||
Sbjct: 733 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 674

                                                                       
Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctgttc 295
           | | ||||| |||||||||||||| ||||| || || ||||| || ||| ||||||||||
Sbjct: 673 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctgttc 614

                                                                       
Query: 296 ttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgttgctct 355
           ||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 613 ttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgttgctct 554

                                                                       
Query: 356 agccttctgtgaatcagacaacttccggccaaaccgagggggcgccggcctcttgggcag 415
           |||||| ||||| || | ||| ||||||||||| |  || ||||||||||| || || ||
Sbjct: 553 agccttttgtgattccgtcaatttccggccaaatctcggaggcgccggccttttcggaag 494

                                                                       
Query: 416 gcgcttcacatcaatatcaccaccacccctgcttactacaaagtatacagagtctggctt 475
            |||||||||||||   |     |||||||||| || |||||||| ||||||||||||||
Sbjct: 493 tcgcttcacatcaa---cttgtgcacccctgctaaccacaaagtagacagagtctggctt 437

                                                                       
Query: 476 tgcttggatggctgtcttggtgaatcccagcttgtctgccggccacaactcatcaccgaa 535
           ||| |||||||||||||||||||| |||||||| ||||| ||||| |  ||||| || ||
Sbjct: 436 tgcctggatggctgtcttggtgaaccccagcttatctgcaggccatagttcatctccaaa 377

                                                                       
Query: 536 gaagctgcttgtgtagagcacttggtcacccgacttgagccctgctcttgctgcattccc 595
           |||||| |||||||||||||| |||||||| || || || ||||||||||| || |||||
Sbjct: 376 gaagctacttgtgtagagcacctggtcacctgatttcaggcctgctcttgccgcgttccc 317

            
Query: 596 t 596
           |
Sbjct: 316 t 316



to top

>dbj|AK060121.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F09, full
           insert sequence
          Length = 1003

 Score =  323 bits (163), Expect = 4e-85
 Identities = 402/481 (83%), Gaps = 3/481 (0%)
 Strand = Plus / Minus

                                                                       
Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175
           |||||||||||||||||||||||||||||||||||  || || |||||||| | ||||||
Sbjct: 823 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 764

                                                                       
Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235
           ||| ||||| |||| |||||| || || || ||||| | | |||| |  ||| | |  ||
Sbjct: 763 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 704

                                                                       
Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctgttc 295
           | | ||||| |||||||||||||| ||||| || || ||||| || ||| ||||||||||
Sbjct: 703 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctgttc 644

                                                                       
Query: 296 ttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgttgctct 355
           ||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 643 ttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgttgctct 584

                                                                       
Query: 356 agccttctgtgaatcagacaacttccggccaaaccgagggggcgccggcctcttgggcag 415
           |||||| ||||| || | ||| ||||||||||| |  || ||||||||||| || || ||
Sbjct: 583 agccttttgtgattccgtcaatttccggccaaatctcggaggcgccggccttttcggaag 524

                                                                       
Query: 416 gcgcttcacatcaatatcaccaccacccctgcttactacaaagtatacagagtctggctt 475
            |||||||||||||   |     |||||||||| || |||||||| ||||||||||||||
Sbjct: 523 tcgcttcacatcaa---cttgtgcacccctgctaaccacaaagtagacagagtctggctt 467

                                                                       
Query: 476 tgcttggatggctgtcttggtgaatcccagcttgtctgccggccacaactcatcaccgaa 535
           ||| |||||||||||||||||||| |||||||| ||||| ||||| |  ||||| || ||
Sbjct: 466 tgcctggatggctgtcttggtgaaccccagcttatctgcaggccatagttcatctccaaa 407

                                                                       
Query: 536 gaagctgcttgtgtagagcacttggtcacccgacttgagccctgctcttgctgcattccc 595
           |||||| |||||||||||||| |||||||| || || || ||||||||||| || |||||
Sbjct: 406 gaagctacttgtgtagagcacctggtcacctgatttcaggcctgctcttgccgcgttccc 347

            
Query: 596 t 596
           |
Sbjct: 346 t 346



to top

>gb|AY106565.1| Zea mays PCO096548 mRNA sequence
          Length = 1026

 Score =  226 bits (114), Expect = 7e-56
 Identities = 362/444 (81%), Gaps = 3/444 (0%)
 Strand = Plus / Minus

                                                                       
Query: 153 ccagcgatgccgataaccaaactgactatcacagtaagaggtggcagtgcgccgccaatg 212
           |||||||||||||| |||||||| || ||||| |  | ||| ||||| |||||||| |||
Sbjct: 850 ccagcgatgccgatcaccaaacttacgatcacggcgataggcggcagagcgccgccgatg 791

                                                                       
Query: 213 ggcttcccagactctacgttgtatcttgcgaatcgcttctttggtgcattgcactgggga 272
           | |||||| |   |  ||| ||| || || || |||||||| || || |||||||| || 
Sbjct: 790 gccttcccggtggcagcgtcgtacctcgcaaaccgcttcttcggcgcgttgcactgtggg 731

                                                                       
Query: 273 cagccgtactcaccaggctgttcttcaaagggcttgggtagaaagtatatgtatccacaa 332
           || ||||| ||  | |||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 730 caaccgtagtcgtcgggctgttcgtcaaaaggcttgggtaggaagtatatgtacccacaa 671

                                                                       
Query: 333 tcaaggcagatgtgtgttgctctagccttctgtgaatcagacaacttccggccaaaccga 392
           |||||||||| ||| ||||||||  |||| |||||||||| || |||||| |||||||| 
Sbjct: 670 tcaaggcagacgtgcgttgctctctccttttgtgaatcagtcagcttccgtccaaaccgg 611

                                                                       
Query: 393 gggggcgccggcctcttgggcaggcgcttcacatcaatatcaccaccacccctgcttact 452
           || |||||||||||||| || ||||||||||| ||||   |  |  |||||||||| || 
Sbjct: 610 ggtggcgccggcctcttaggtaggcgcttcacgtcaa---cttcggcacccctgctcacg 554

                                                                       
Query: 453 acaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcccagcttgtct 512
           || ||||| || ||||||| ||| ||||||||||||||||||||||| || ||||| || 
Sbjct: 553 acgaagtagacggagtctgacttcgcttggatggctgtcttggtgaacccaagcttatcc 494

                                                                       
Query: 513 gccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtcacccgacttg 572
           || ||||||| ||| || |||||||||||||||||||| || || ||||| || |  || 
Sbjct: 493 gcaggccacagctcgtctccgaagaagctgcttgtgtacaggacctggtccccggttttc 434

                                   
Query: 573 agccctgctcttgctgcattccct 596
           || || ||||| ||||||||||||
Sbjct: 433 agaccggctctggctgcattccct 410



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  147 bits (74), Expect = 5e-32
 Identities = 134/154 (87%)
 Strand = Plus / Minus

                                                                           
Query: 443     cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502
               |||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 3689386 cctgctaaccacaaagtagacagagtctggctttgcctggatggctgtcttggtgaaccc 3689327

                                                                           
Query: 503     cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562
               |||||| ||||| ||||| |  ||||| || |||||||| |||||||||||||| |||||
Sbjct: 3689326 cagcttatctgcaggccatagttcatctccaaagaagctacttgtgtagagcacctggtc 3689267

                                                 
Query: 563     acccgacttgagccctgctcttgctgcattccct 596
               ||| || || || ||||||||||| || ||||||
Sbjct: 3689266 acctgatttcaggcctgctcttgccgcgttccct 3689233



 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                           
Query: 290     ctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgt 349
               ||||||||| || |||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 3689832 ctgttcttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgt 3689773

                          
Query: 350     tgctctagcct 360
               |||||||||||
Sbjct: 3689772 tgctctagcct 3689762



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 144/177 (81%)
 Strand = Plus / Minus

                                                                           
Query: 116     agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175
               |||||||||||||||||||||||||||||||||||  || || |||||||| | ||||||
Sbjct: 3690112 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 3690053

                                                                           
Query: 176     gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235
               ||| ||||| |||| |||||| || || || ||||| | | |||| |  ||| | |  ||
Sbjct: 3690052 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 3689993

                                                                        
Query: 236     tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctg 292
               | | ||||| |||||||||||||| ||||| || || ||||| || ||| |||||||
Sbjct: 3689992 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctg 3689936



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                   
Query: 378     ttccggccaaaccgagggggcgccggcctcttgggcaggcgcttcacatcaa 429
               ||||||||||| |  || ||||||||||| || || || |||||||||||||
Sbjct: 3689638 ttccggccaaatctcggaggcgccggccttttcggaagtcgcttcacatcaa 3689587



to top

>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ9990_A01
          Length = 101684

 Score =  147 bits (74), Expect = 5e-32
 Identities = 134/154 (87%)
 Strand = Plus / Minus

                                                                         
Query: 443   cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502
             |||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 12883 cctgctaaccacaaagtagacagagtctggctttgcctggatggctgtcttggtgaaccc 12824

                                                                         
Query: 503   cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562
             |||||| ||||| ||||| |  ||||| || |||||||| |||||||||||||| |||||
Sbjct: 12823 cagcttatctgcaggccatagttcatctccaaagaagctacttgtgtagagcacctggtc 12764

                                               
Query: 563   acccgacttgagccctgctcttgctgcattccct 596
             ||| || || || ||||||||||| || ||||||
Sbjct: 12763 acctgatttcaggcctgctcttgccgcgttccct 12730



 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                         
Query: 290   ctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgt 349
             ||||||||| || |||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 13329 ctgttcttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgt 13270

                        
Query: 350   tgctctagcct 360
             |||||||||||
Sbjct: 13269 tgctctagcct 13259



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 144/177 (81%)
 Strand = Plus / Minus

                                                                         
Query: 116   agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175
             |||||||||||||||||||||||||||||||||||  || || |||||||| | ||||||
Sbjct: 13609 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 13550

                                                                         
Query: 176   gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235
             ||| ||||| |||| |||||| || || || ||||| | | |||| |  ||| | |  ||
Sbjct: 13549 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 13490

                                                                      
Query: 236   tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctg 292
             | | ||||| |||||||||||||| ||||| || || ||||| || ||| |||||||
Sbjct: 13489 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctg 13433



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 378   ttccggccaaaccgagggggcgccggcctcttgggcaggcgcttcacatcaa 429
             ||||||||||| |  || ||||||||||| || || || |||||||||||||
Sbjct: 13135 ttccggccaaatctcggaggcgccggccttttcggaagtcgcttcacatcaa 13084



to top

>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0577B11
          Length = 180355

 Score =  147 bits (74), Expect = 5e-32
 Identities = 134/154 (87%)
 Strand = Plus / Minus

                                                                          
Query: 443    cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502
              |||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 167892 cctgctaaccacaaagtagacagagtctggctttgcctggatggctgtcttggtgaaccc 167833

                                                                          
Query: 503    cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562
              |||||| ||||| ||||| |  ||||| || |||||||| |||||||||||||| |||||
Sbjct: 167832 cagcttatctgcaggccatagttcatctccaaagaagctacttgtgtagagcacctggtc 167773

                                                
Query: 563    acccgacttgagccctgctcttgctgcattccct 596
              ||| || || || ||||||||||| || ||||||
Sbjct: 167772 acctgatttcaggcctgctcttgccgcgttccct 167739



 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                          
Query: 290    ctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgt 349
              ||||||||| || |||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 168338 ctgttcttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgt 168279

                         
Query: 350    tgctctagcct 360
              |||||||||||
Sbjct: 168278 tgctctagcct 168268



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 144/177 (81%)
 Strand = Plus / Minus

                                                                          
Query: 116    agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175
              |||||||||||||||||||||||||||||||||||  || || |||||||| | ||||||
Sbjct: 168618 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 168559

                                                                          
Query: 176    gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235
              ||| ||||| |||| |||||| || || || ||||| | | |||| |  ||| | |  ||
Sbjct: 168558 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 168499

                                                                       
Query: 236    tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctg 292
              | | ||||| |||||||||||||| ||||| || || ||||| || ||| |||||||
Sbjct: 168498 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctg 168442



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                  
Query: 378    ttccggccaaaccgagggggcgccggcctcttgggcaggcgcttcacatcaa 429
              ||||||||||| |  || ||||||||||| || || || |||||||||||||
Sbjct: 168144 ttccggccaaatctcggaggcgccggccttttcggaagtcgcttcacatcaa 168093



to top

>emb|CT571264.2| Medicago truncatula chromosome 5 clone mth2-146m15, COMPLETE SEQUENCE
          Length = 141614

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 128/154 (83%)
 Strand = Plus / Minus

                                                                         
Query: 443   cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502
             |||||| || |||||||| |||||||| ||||| || | ||| ||||| || ||||||||
Sbjct: 78151 cctgctgacaacaaagtagacagagtcgggcttagcattgattgctgttttcgtgaatcc 78092

                                                                         
Query: 503   cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562
              ||||| ||||| ||||| || ||||| || ||||| ||||| || || || ||||||||
Sbjct: 78091 aagcttatctgctggccataattcatctccaaagaaactgctagtatatagaacttggtc 78032

                                               
Query: 563   acccgacttgagccctgctcttgctgcattccct 596
              || ||||| | ||||||||||||||||||||||
Sbjct: 78031 cccggactttaaccctgctcttgctgcattccct 77998



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 315   aagtatatgtatccacaatcaaggcagatgtgtgttgctctagcct 360
             |||||||||||||| || |||||||| ||||| || ||||||||||
Sbjct: 78988 aagtatatgtatccgcagtcaaggcaaatgtgagtagctctagcct 78943



to top

>dbj|AK060661.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B02, full
           insert sequence
          Length = 297

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                       
Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175
           |||||||||||||||||||||||||||||||||||  || || |||||||| | ||||||
Sbjct: 116 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 57

                                
Query: 176 gactatcacagtaagaggtgg 196
           ||| ||||| |||| ||||||
Sbjct: 56  gacgatcactgtaataggtgg 36



to top

>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b,
             complete sequence
          Length = 45450

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 123/150 (82%)
 Strand = Plus / Plus

                                                                         
Query: 443   cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502
             |||||| || |||||||| |||||||||||||| |||||||| || || || ||||| ||
Sbjct: 29887 cctgctgacaacaaagtagacagagtctggcttagcttggattgcggttttagtgaagcc 29946

                                                                         
Query: 503   cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562
              ||||| || || |||||||| ||||| || ||||| ||||| || || || ||||||||
Sbjct: 29947 aagcttatccgcaggccacaattcatccccaaagaaactgctagtataaaggacttggtc 30006

                                           
Query: 563   acccgacttgagccctgctcttgctgcatt 592
              || | ||| | ||||||| ||||||||||
Sbjct: 30007 ccctgcctttaaccctgcttttgctgcatt 30036



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 317   gtatatgtatccacaatcaaggcagatgtgtgttgctctagcct 360
             ||||||| |||||||||||||||| ||||| || ||||||||||
Sbjct: 29276 gtatatgaatccacaatcaaggcaaatgtgagtagctctagcct 29319



to top

>ref|NM_121723.3| Arabidopsis thaliana electron transporter/ metal ion binding /
           protein binding AT5G17170 mRNA, complete cds
          Length = 1131

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 125/158 (79%)
 Strand = Plus / Minus

                                                                       
Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498
           |||| ||||| || |||||||| ||||| || || ||||| || || || || || || |
Sbjct: 631 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 572

                                                                       
Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558
           | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| |  ||||
Sbjct: 571 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 512

                                                 
Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596
           | || || || || ||||||||| ||||||| ||||||
Sbjct: 511 gatctccagatttaagccctgcttttgctgcgttccct 474



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347
           |||||||| ||||| |  ||||||| |  ||||||| ||||||||||||| || ||||| 
Sbjct: 779 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 720

                            
Query: 348 gttgctctagccttctg 364
           || ||||| ||||||||
Sbjct: 719 gtagctcttgccttctg 703



to top

>gb|BT000984.1| Arabidopsis thaliana clone U09484 unknown protein (At5g17170) mRNA,
           complete cds
          Length = 847

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 125/158 (79%)
 Strand = Plus / Minus

                                                                       
Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498
           |||| ||||| || |||||||| ||||| || || ||||| || || || || || || |
Sbjct: 499 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 440

                                                                       
Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558
           | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| |  ||||
Sbjct: 439 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 380

                                                 
Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596
           | || || || || ||||||||| ||||||| ||||||
Sbjct: 379 gatctccagatttaagccctgcttttgctgcgttccct 342



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347
           |||||||| ||||| |  ||||||| |  ||||||| ||||||||||||| || ||||| 
Sbjct: 647 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 588

                            
Query: 348 gttgctctagccttctg 364
           || ||||| ||||||||
Sbjct: 587 gtagctcttgccttctg 571



to top

>gb|AY035119.1| Arabidopsis thaliana unknown protein (At5g17170) mRNA, complete cds
          Length = 1100

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 125/158 (79%)
 Strand = Plus / Minus

                                                                       
Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498
           |||| ||||| || |||||||| ||||| || || ||||| || || || || || || |
Sbjct: 584 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 525

                                                                       
Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558
           | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| |  ||||
Sbjct: 524 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 465

                                                 
Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596
           | || || || || ||||||||| ||||||| ||||||
Sbjct: 464 gatctccagatttaagccctgcttttgctgcgttccct 427



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347
           |||||||| ||||| |  ||||||| |  ||||||| ||||||||||||| || ||||| 
Sbjct: 732 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 673

                            
Query: 348 gttgctctagccttctg 364
           || ||||| ||||||||
Sbjct: 672 gtagctcttgccttctg 656



to top

>emb|BX831408.1|CNS0A09X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS88ZA11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 817

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 125/158 (79%)
 Strand = Plus / Minus

                                                                       
Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498
           |||| ||||| || |||||||| ||||| || || ||||| || || || || || || |
Sbjct: 381 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 322

                                                                       
Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558
           | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| |  ||||
Sbjct: 321 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 262

                                                 
Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596
           | || || || || ||||||||| ||||||| ||||||
Sbjct: 261 gatctccagatttaagccctgcttttgctgcgttccct 224



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347
           |||||||| ||||| |  ||||||| |  ||||||| ||||||||||||| || ||||| 
Sbjct: 529 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 470

                            
Query: 348 gttgctctagccttctg 364
           || ||||| ||||||||
Sbjct: 469 gtagctcttgccttctg 453



to top

>emb|BX830489.1|CNS0A065 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB85ZC12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 976

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 125/158 (79%)
 Strand = Plus / Minus

                                                                       
Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498
           |||| ||||| || |||||||| ||||| || || ||||| || || || || || || |
Sbjct: 552 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 493

                                                                       
Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558
           | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| |  ||||
Sbjct: 492 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 433

                                                 
Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596
           | || || || || ||||||||| ||||||| ||||||
Sbjct: 432 gatctccagatttaagccctgcttttgctgcgttccct 395



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347
           |||||||| ||||| |  ||||||| |  ||||||| ||||||||||||| || ||||| 
Sbjct: 700 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 641

                            
Query: 348 gttgctctagccttctg 364
           || ||||| ||||||||
Sbjct: 640 gtagctcttgccttctg 624



to top

>emb|BX829838.1|CNS09ZY3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB40ZA04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 996

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 125/158 (79%)
 Strand = Plus / Minus

                                                                       
Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498
           |||| ||||| || |||||||| ||||| || || ||||| || || || || || || |
Sbjct: 631 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 572

                                                                       
Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558
           | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| |  ||||
Sbjct: 571 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 512

                                                 
Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596
           | || || || || ||||||||| ||||||| ||||||
Sbjct: 511 gatctccagatttaagccctgcttttgctgcgttccct 474



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347
           |||||||| ||||| |  ||||||| |  ||||||| ||||||||||||| || ||||| 
Sbjct: 780 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 721

                            
Query: 348 gttgctctagccttctg 364
           || ||||| ||||||||
Sbjct: 720 gtagctcttgccttctg 704



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 120 tattgaaggccatatacaagcaaagc 145
           |||||||| |||||||||||||||||
Sbjct: 953 tattgaagaccatatacaagcaaagc 928



to top

>dbj|AB005238.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11
          Length = 75188

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 122/154 (79%)
 Strand = Plus / Minus

                                                                        
Query: 443  cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502
            |||||| || |||||||| ||||| || || ||||| || || || || || || || ||
Sbjct: 9046 cctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaaagcc 8987

                                                                        
Query: 503  cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562
             ||||| ||||| ||||| | |||||| || ||||| ||||||||||| |  ||||| ||
Sbjct: 8986 aagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaacttgatc 8927

                                              
Query: 563  acccgacttgagccctgctcttgctgcattccct 596
             || || || ||||||||| ||||||| ||||||
Sbjct: 8926 tccagatttaagccctgcttttgctgcgttccct 8893



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 317  gtatatgtatccacaatcaaggcagatgtgtgttgctctagcct 360
            ||||||| ||||||||||||| || ||||| || ||||| ||||
Sbjct: 9657 gtatatgaatccacaatcaagacaaatgtgagtagctcttgcct 9614



to top

>ref|NM_104894.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT1G62130 mRNA, complete cds
          Length = 3078

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 514  ccggccacaactcatcaccgaagaa 538
            |||| ||||||||||||||||||||
Sbjct: 1354 ccggacacaactcatcaccgaagaa 1330



to top

>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    atgccgataaccaaactgact 179
              |||||||||||||||||||||
Sbjct: 241932 atgccgataaccaaactgact 241912



to top

>gb|AC000375.1|F19K23 Sequence of BAC F19K23 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 97451

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 514   ccggccacaactcatcaccgaagaa 538
             |||| ||||||||||||||||||||
Sbjct: 27850 ccggacacaactcatcaccgaagaa 27874



to top

>gb|U26679.1|ABU26679 Azospirillum brasilense lateral flagellin (laf1) gene, complete cds
          Length = 1573

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 389  ccgagggggcgccggcctctt 409
            |||||||||||||||||||||
Sbjct: 1483 ccgagggggcgccggcctctt 1503



to top

>gb|AC004227.1| Homo sapiens chromosome 5, P1 clone 356a8 (LBNL H32), complete sequence
          Length = 72941

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tattgaaattttctgttaga 46
             ||||||||||||||||||||
Sbjct: 12397 tattgaaattttctgttaga 12416



to top

>gb|AC137596.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
             OSJNBb0031H05, complete sequence
          Length = 141200

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    catggccagaacaaaatttctcaa 105
             |||||||||||| |||||||||||
Sbjct: 17747 catggccagaaccaaatttctcaa 17724



to top

>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence
          Length = 241184

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     catcattattgaaattttct 40
              ||||||||||||||||||||
Sbjct: 124240 catcattattgaaattttct 124259



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     catcattattgaaattttct 40
              ||||||||||||||||||||
Sbjct: 102135 catcattattgaaattttct 102154



to top

>gb|AC117615.11| Mus musculus chromosome 19, clone RP23-110D20, complete sequence
          Length = 191809

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 206    gccaatgggcttcccagactctac 229
              |||||||||||||||||| |||||
Sbjct: 182397 gccaatgggcttcccagagtctac 182374



to top

>gb|AC117629.16| Mus musculus chromosome 19, clone RP23-179C21, complete sequence
          Length = 248718

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 206    gccaatgggcttcccagactctac 229
              |||||||||||||||||| |||||
Sbjct: 170916 gccaatgggcttcccagagtctac 170939



to top

>emb|CR391905.6| Zebrafish DNA sequence from clone DKEY-16P7 in linkage group 9, complete
              sequence
          Length = 221511

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     attttctgttagatagagta 53
              ||||||||||||||||||||
Sbjct: 110397 attttctgttagatagagta 110416



to top

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     aagcccctatgccagcgatg 161
               ||||||||||||||||||||
Sbjct: 3613408 aagcccctatgccagcgatg 3613427



to top

>emb|AL356791.9| Human DNA sequence from clone RP11-80I3 on chromosome 9, complete
             sequence
          Length = 101157

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    agatagagtacatgagaaat 63
             ||||||||||||||||||||
Sbjct: 15461 agatagagtacatgagaaat 15480



to top

>emb|AL035448.29|HS742J24 Human DNA sequence from clone RP4-742J24 on chromosome 20p11.23-12.3
             Contains the BTBD3 gene for BTB (POZ) domain containing 3
             (KIAA0952), a novel gene and a CpG island, complete
             sequence
          Length = 167075

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    atggccagaacaaaatttct 102
             ||||||||||||||||||||
Sbjct: 13621 atggccagaacaaaatttct 13640



to top

>ref|XM_781195.1| PREDICTED: Strongylocentrotus purpuratus similar to DEP domain
           containing 5 isoform 2 (LOC581181), mRNA
          Length = 372

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 gtactcaccaggctgttctt 297
           ||||||||||||||||||||
Sbjct: 356 gtactcaccaggctgttctt 337



to top

>emb|AL590629.16| Mouse DNA sequence from clone RP23-202F23 on chromosome X, complete
             sequence
          Length = 171883

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   tactcaccaggctgttcttc 298
             ||||||||||||||||||||
Sbjct: 12522 tactcaccaggctgttcttc 12503



to top

>gb|AC023983.11| Homo sapiens chromosome 18, clone RP11-621L6, complete sequence
          Length = 190225

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    acagtaagaggtggcagtgc 202
              ||||||||||||||||||||
Sbjct: 105365 acagtaagaggtggcagtgc 105346



to top

>dbj|AK095052.1| Homo sapiens cDNA FLJ37733 fis, clone BRHIP2020827
          Length = 2906

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 aaccaaactgactatcacag 186
           ||||||||||||||||||||
Sbjct: 830 aaccaaactgactatcacag 811



to top

>dbj|AK094349.1| Homo sapiens cDNA FLJ37030 fis, clone BRACE2011183
          Length = 2304

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 aaccaaactgactatcacag 186
           ||||||||||||||||||||
Sbjct: 229 aaccaaactgactatcacag 210



to top

>gb|AC092547.7| Homo sapiens 3q BAC RP11-371L14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178328

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    aaccaaactgactatcacag 186
              ||||||||||||||||||||
Sbjct: 177289 aaccaaactgactatcacag 177270



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 82       catggccagaacaaaatttctcaa 105
                |||||||||||| |||||||||||
Sbjct: 21561121 catggccagaaccaaatttctcaa 21561098



to top

>gb|AC157277.2| Mus musculus BAC clone RP23-465H15 from chromosome 15, complete
             sequence
          Length = 177253

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   aaagggcttgggtagaaagt 318
             ||||||||||||||||||||
Sbjct: 54024 aaagggcttgggtagaaagt 54005



to top

>gb|AC012449.7| Homo sapiens BAC clone RP11-321K13 from 2, complete sequence
          Length = 109335

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   acagtaagaggtggcagtgc 202
             ||||||||||||||||||||
Sbjct: 66769 acagtaagaggtggcagtgc 66750



to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    gcttgtctgccggccacaac 524
              ||||||||||||||||||||
Sbjct: 722560 gcttgtctgccggccacaac 722541



to top

>gb|AC106776.4| Homo sapiens chromosome 5 clone RP11-325M13, complete sequence
          Length = 114419

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   aaagggcttgggtagaaagt 318
             ||||||||||||||||||||
Sbjct: 80029 aaagggcttgggtagaaagt 80048



to top

>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0489D11
          Length = 150757

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     catggccagaacaaaatttctcaa 105
              |||||||||||| |||||||||||
Sbjct: 122731 catggccagaaccaaatttctcaa 122708



to top

>dbj|BS000234.1| Pan troglodytes chromosome 22 clone:PTB-190I13, map 22, complete
             sequences
          Length = 174520

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   gatgtgtgttgctctagcct 360
             ||||||||||||||||||||
Sbjct: 29577 gatgtgtgttgctctagcct 29558



to top

>gb|AC134622.3| Mus musculus BAC clone RP23-13I7 from 6, complete sequence
          Length = 203072

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 443    cctgcttactacaaagtata 462
              ||||||||||||||||||||
Sbjct: 154790 cctgcttactacaaagtata 154809



to top

>emb|BX927109.13| Zebrafish DNA sequence from clone CH211-80D23 in linkage group 18,
              complete sequence
          Length = 169784

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     attttaccccatcattattg 31
              ||||||||||||||||||||
Sbjct: 103124 attttaccccatcattattg 103105



to top

>emb|BX936417.8| Zebrafish DNA sequence from clone DKEY-231D7 in linkage group 18,
             complete sequence
          Length = 151853

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    attttaccccatcattattg 31
             ||||||||||||||||||||
Sbjct: 65958 attttaccccatcattattg 65977



to top

>gb|AC007510.6|AC007510 Homo sapiens chromosome 17, clone hRPK.678_P_16, complete sequence
          Length = 156420

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   aaccaaactgactatcacag 186
             ||||||||||||||||||||
Sbjct: 20009 aaccaaactgactatcacag 20028



to top

>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     tatgccagcgatgccgataa 168
               ||||||||||||||||||||
Sbjct: 2207470 tatgccagcgatgccgataa 2207451



to top

>dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, section 95/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 341  gatgtgtgttgctctagcct 360
            ||||||||||||||||||||
Sbjct: 1276 gatgtgtgttgctctagcct 1257



to top

>emb|AJ617740.1| Pseudomonas putida clc transposon
          Length = 105027

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   aagcccctatgccagcgatg 161
             ||||||||||||||||||||
Sbjct: 50709 aagcccctatgccagcgatg 50690



to top

>gb|AC164567.5| Mus musculus BAC clone RP23-64B8 from chromosome 10, complete sequence
          Length = 262262

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     aatttctcaagagatgaaaa 115
              ||||||||||||||||||||
Sbjct: 172910 aatttctcaagagatgaaaa 172891



to top

>dbj|AP001046.1| Homo sapiens genomic DNA, chromosome 21, clone:KB43F12, MX1-D21S171
            region, complete sequence
          Length = 158063

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 341  gatgtgtgttgctctagcct 360
            ||||||||||||||||||||
Sbjct: 1276 gatgtgtgttgctctagcct 1257


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,105,946
Number of Sequences: 3902068
Number of extensions: 5105946
Number of successful extensions: 96688
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96429
Number of HSP's gapped (non-prelim): 258
length of query: 598
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 575
effective length of database: 17,143,297,704
effective search space: 9857396179800
effective search space used: 9857396179800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top