Clone Name | rbah63g15 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_189108.2| Oryza sativa (japonica cultivar-group), mRNA Length = 934 Score = 323 bits (163), Expect = 4e-85 Identities = 402/481 (83%), Gaps = 3/481 (0%) Strand = Plus / Minus Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175 ||||||||||||||||||||||||||||||||||| || || |||||||| | |||||| Sbjct: 793 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 734 Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235 ||| ||||| |||| |||||| || || || ||||| | | |||| | ||| | | || Sbjct: 733 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 674 Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctgttc 295 | | ||||| |||||||||||||| ||||| || || ||||| || ||| |||||||||| Sbjct: 673 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctgttc 614 Query: 296 ttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgttgctct 355 ||| || |||||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct: 613 ttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgttgctct 554 Query: 356 agccttctgtgaatcagacaacttccggccaaaccgagggggcgccggcctcttgggcag 415 |||||| ||||| || | ||| ||||||||||| | || ||||||||||| || || || Sbjct: 553 agccttttgtgattccgtcaatttccggccaaatctcggaggcgccggccttttcggaag 494 Query: 416 gcgcttcacatcaatatcaccaccacccctgcttactacaaagtatacagagtctggctt 475 ||||||||||||| | |||||||||| || |||||||| |||||||||||||| Sbjct: 493 tcgcttcacatcaa---cttgtgcacccctgctaaccacaaagtagacagagtctggctt 437 Query: 476 tgcttggatggctgtcttggtgaatcccagcttgtctgccggccacaactcatcaccgaa 535 ||| |||||||||||||||||||| |||||||| ||||| ||||| | ||||| || || Sbjct: 436 tgcctggatggctgtcttggtgaaccccagcttatctgcaggccatagttcatctccaaa 377 Query: 536 gaagctgcttgtgtagagcacttggtcacccgacttgagccctgctcttgctgcattccc 595 |||||| |||||||||||||| |||||||| || || || ||||||||||| || ||||| Sbjct: 376 gaagctacttgtgtagagcacctggtcacctgatttcaggcctgctcttgccgcgttccc 317 Query: 596 t 596 | Sbjct: 316 t 316
>ref|XM_507141.1| PREDICTED Oryza sativa (japonica cultivar-group), P0577B11.138 mRNA Length = 1003 Score = 323 bits (163), Expect = 4e-85 Identities = 402/481 (83%), Gaps = 3/481 (0%) Strand = Plus / Minus Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175 ||||||||||||||||||||||||||||||||||| || || |||||||| | |||||| Sbjct: 823 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 764 Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235 ||| ||||| |||| |||||| || || || ||||| | | |||| | ||| | | || Sbjct: 763 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 704 Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctgttc 295 | | ||||| |||||||||||||| ||||| || || ||||| || ||| |||||||||| Sbjct: 703 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctgttc 644 Query: 296 ttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgttgctct 355 ||| || |||||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct: 643 ttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgttgctct 584 Query: 356 agccttctgtgaatcagacaacttccggccaaaccgagggggcgccggcctcttgggcag 415 |||||| ||||| || | ||| ||||||||||| | || ||||||||||| || || || Sbjct: 583 agccttttgtgattccgtcaatttccggccaaatctcggaggcgccggccttttcggaag 524 Query: 416 gcgcttcacatcaatatcaccaccacccctgcttactacaaagtatacagagtctggctt 475 ||||||||||||| | |||||||||| || |||||||| |||||||||||||| Sbjct: 523 tcgcttcacatcaa---cttgtgcacccctgctaaccacaaagtagacagagtctggctt 467 Query: 476 tgcttggatggctgtcttggtgaatcccagcttgtctgccggccacaactcatcaccgaa 535 ||| |||||||||||||||||||| |||||||| ||||| ||||| | ||||| || || Sbjct: 466 tgcctggatggctgtcttggtgaaccccagcttatctgcaggccatagttcatctccaaa 407 Query: 536 gaagctgcttgtgtagagcacttggtcacccgacttgagccctgctcttgctgcattccc 595 |||||| |||||||||||||| |||||||| || || || ||||||||||| || ||||| Sbjct: 406 gaagctacttgtgtagagcacctggtcacctgatttcaggcctgctcttgccgcgttccc 347 Query: 596 t 596 | Sbjct: 346 t 346
>dbj|AK070227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041B21, full insert sequence Length = 934 Score = 323 bits (163), Expect = 4e-85 Identities = 402/481 (83%), Gaps = 3/481 (0%) Strand = Plus / Minus Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175 ||||||||||||||||||||||||||||||||||| || || |||||||| | |||||| Sbjct: 793 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 734 Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235 ||| ||||| |||| |||||| || || || ||||| | | |||| | ||| | | || Sbjct: 733 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 674 Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctgttc 295 | | ||||| |||||||||||||| ||||| || || ||||| || ||| |||||||||| Sbjct: 673 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctgttc 614 Query: 296 ttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgttgctct 355 ||| || |||||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct: 613 ttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgttgctct 554 Query: 356 agccttctgtgaatcagacaacttccggccaaaccgagggggcgccggcctcttgggcag 415 |||||| ||||| || | ||| ||||||||||| | || ||||||||||| || || || Sbjct: 553 agccttttgtgattccgtcaatttccggccaaatctcggaggcgccggccttttcggaag 494 Query: 416 gcgcttcacatcaatatcaccaccacccctgcttactacaaagtatacagagtctggctt 475 ||||||||||||| | |||||||||| || |||||||| |||||||||||||| Sbjct: 493 tcgcttcacatcaa---cttgtgcacccctgctaaccacaaagtagacagagtctggctt 437 Query: 476 tgcttggatggctgtcttggtgaatcccagcttgtctgccggccacaactcatcaccgaa 535 ||| |||||||||||||||||||| |||||||| ||||| ||||| | ||||| || || Sbjct: 436 tgcctggatggctgtcttggtgaaccccagcttatctgcaggccatagttcatctccaaa 377 Query: 536 gaagctgcttgtgtagagcacttggtcacccgacttgagccctgctcttgctgcattccc 595 |||||| |||||||||||||| |||||||| || || || ||||||||||| || ||||| Sbjct: 376 gaagctacttgtgtagagcacctggtcacctgatttcaggcctgctcttgccgcgttccc 317 Query: 596 t 596 | Sbjct: 316 t 316
>dbj|AK060121.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F09, full insert sequence Length = 1003 Score = 323 bits (163), Expect = 4e-85 Identities = 402/481 (83%), Gaps = 3/481 (0%) Strand = Plus / Minus Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175 ||||||||||||||||||||||||||||||||||| || || |||||||| | |||||| Sbjct: 823 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 764 Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235 ||| ||||| |||| |||||| || || || ||||| | | |||| | ||| | | || Sbjct: 763 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 704 Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctgttc 295 | | ||||| |||||||||||||| ||||| || || ||||| || ||| |||||||||| Sbjct: 703 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctgttc 644 Query: 296 ttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgttgctct 355 ||| || |||||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct: 643 ttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgttgctct 584 Query: 356 agccttctgtgaatcagacaacttccggccaaaccgagggggcgccggcctcttgggcag 415 |||||| ||||| || | ||| ||||||||||| | || ||||||||||| || || || Sbjct: 583 agccttttgtgattccgtcaatttccggccaaatctcggaggcgccggccttttcggaag 524 Query: 416 gcgcttcacatcaatatcaccaccacccctgcttactacaaagtatacagagtctggctt 475 ||||||||||||| | |||||||||| || |||||||| |||||||||||||| Sbjct: 523 tcgcttcacatcaa---cttgtgcacccctgctaaccacaaagtagacagagtctggctt 467 Query: 476 tgcttggatggctgtcttggtgaatcccagcttgtctgccggccacaactcatcaccgaa 535 ||| |||||||||||||||||||| |||||||| ||||| ||||| | ||||| || || Sbjct: 466 tgcctggatggctgtcttggtgaaccccagcttatctgcaggccatagttcatctccaaa 407 Query: 536 gaagctgcttgtgtagagcacttggtcacccgacttgagccctgctcttgctgcattccc 595 |||||| |||||||||||||| |||||||| || || || ||||||||||| || ||||| Sbjct: 406 gaagctacttgtgtagagcacctggtcacctgatttcaggcctgctcttgccgcgttccc 347 Query: 596 t 596 | Sbjct: 346 t 346
>gb|AY106565.1| Zea mays PCO096548 mRNA sequence Length = 1026 Score = 226 bits (114), Expect = 7e-56 Identities = 362/444 (81%), Gaps = 3/444 (0%) Strand = Plus / Minus Query: 153 ccagcgatgccgataaccaaactgactatcacagtaagaggtggcagtgcgccgccaatg 212 |||||||||||||| |||||||| || ||||| | | ||| ||||| |||||||| ||| Sbjct: 850 ccagcgatgccgatcaccaaacttacgatcacggcgataggcggcagagcgccgccgatg 791 Query: 213 ggcttcccagactctacgttgtatcttgcgaatcgcttctttggtgcattgcactgggga 272 | |||||| | | ||| ||| || || || |||||||| || || |||||||| || Sbjct: 790 gccttcccggtggcagcgtcgtacctcgcaaaccgcttcttcggcgcgttgcactgtggg 731 Query: 273 cagccgtactcaccaggctgttcttcaaagggcttgggtagaaagtatatgtatccacaa 332 || ||||| || | |||||||| ||||| ||||||||||| ||||||||||| |||||| Sbjct: 730 caaccgtagtcgtcgggctgttcgtcaaaaggcttgggtaggaagtatatgtacccacaa 671 Query: 333 tcaaggcagatgtgtgttgctctagccttctgtgaatcagacaacttccggccaaaccga 392 |||||||||| ||| |||||||| |||| |||||||||| || |||||| |||||||| Sbjct: 670 tcaaggcagacgtgcgttgctctctccttttgtgaatcagtcagcttccgtccaaaccgg 611 Query: 393 gggggcgccggcctcttgggcaggcgcttcacatcaatatcaccaccacccctgcttact 452 || |||||||||||||| || ||||||||||| |||| | | |||||||||| || Sbjct: 610 ggtggcgccggcctcttaggtaggcgcttcacgtcaa---cttcggcacccctgctcacg 554 Query: 453 acaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcccagcttgtct 512 || ||||| || ||||||| ||| ||||||||||||||||||||||| || ||||| || Sbjct: 553 acgaagtagacggagtctgacttcgcttggatggctgtcttggtgaacccaagcttatcc 494 Query: 513 gccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtcacccgacttg 572 || ||||||| ||| || |||||||||||||||||||| || || ||||| || | || Sbjct: 493 gcaggccacagctcgtctccgaagaagctgcttgtgtacaggacctggtccccggttttc 434 Query: 573 agccctgctcttgctgcattccct 596 || || ||||| |||||||||||| Sbjct: 433 agaccggctctggctgcattccct 410
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 147 bits (74), Expect = 5e-32 Identities = 134/154 (87%) Strand = Plus / Minus Query: 443 cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502 |||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| || Sbjct: 3689386 cctgctaaccacaaagtagacagagtctggctttgcctggatggctgtcttggtgaaccc 3689327 Query: 503 cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562 |||||| ||||| ||||| | ||||| || |||||||| |||||||||||||| ||||| Sbjct: 3689326 cagcttatctgcaggccatagttcatctccaaagaagctacttgtgtagagcacctggtc 3689267 Query: 563 acccgacttgagccctgctcttgctgcattccct 596 ||| || || || ||||||||||| || |||||| Sbjct: 3689266 acctgatttcaggcctgctcttgccgcgttccct 3689233 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 290 ctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgt 349 ||||||||| || |||||||| || |||||||||||||||||||||||||| |||||||| Sbjct: 3689832 ctgttcttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgt 3689773 Query: 350 tgctctagcct 360 ||||||||||| Sbjct: 3689772 tgctctagcct 3689762 Score = 89.7 bits (45), Expect = 1e-14 Identities = 144/177 (81%) Strand = Plus / Minus Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175 ||||||||||||||||||||||||||||||||||| || || |||||||| | |||||| Sbjct: 3690112 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 3690053 Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235 ||| ||||| |||| |||||| || || || ||||| | | |||| | ||| | | || Sbjct: 3690052 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 3689993 Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctg 292 | | ||||| |||||||||||||| ||||| || || ||||| || ||| ||||||| Sbjct: 3689992 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctg 3689936 Score = 40.1 bits (20), Expect = 8.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 378 ttccggccaaaccgagggggcgccggcctcttgggcaggcgcttcacatcaa 429 ||||||||||| | || ||||||||||| || || || ||||||||||||| Sbjct: 3689638 ttccggccaaatctcggaggcgccggccttttcggaagtcgcttcacatcaa 3689587
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 147 bits (74), Expect = 5e-32 Identities = 134/154 (87%) Strand = Plus / Minus Query: 443 cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502 |||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| || Sbjct: 12883 cctgctaaccacaaagtagacagagtctggctttgcctggatggctgtcttggtgaaccc 12824 Query: 503 cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562 |||||| ||||| ||||| | ||||| || |||||||| |||||||||||||| ||||| Sbjct: 12823 cagcttatctgcaggccatagttcatctccaaagaagctacttgtgtagagcacctggtc 12764 Query: 563 acccgacttgagccctgctcttgctgcattccct 596 ||| || || || ||||||||||| || |||||| Sbjct: 12763 acctgatttcaggcctgctcttgccgcgttccct 12730 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 290 ctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgt 349 ||||||||| || |||||||| || |||||||||||||||||||||||||| |||||||| Sbjct: 13329 ctgttcttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgt 13270 Query: 350 tgctctagcct 360 ||||||||||| Sbjct: 13269 tgctctagcct 13259 Score = 89.7 bits (45), Expect = 1e-14 Identities = 144/177 (81%) Strand = Plus / Minus Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175 ||||||||||||||||||||||||||||||||||| || || |||||||| | |||||| Sbjct: 13609 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 13550 Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235 ||| ||||| |||| |||||| || || || ||||| | | |||| | ||| | | || Sbjct: 13549 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 13490 Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctg 292 | | ||||| |||||||||||||| ||||| || || ||||| || ||| ||||||| Sbjct: 13489 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctg 13433 Score = 40.1 bits (20), Expect = 8.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 378 ttccggccaaaccgagggggcgccggcctcttgggcaggcgcttcacatcaa 429 ||||||||||| | || ||||||||||| || || || ||||||||||||| Sbjct: 13135 ttccggccaaatctcggaggcgccggccttttcggaagtcgcttcacatcaa 13084
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 147 bits (74), Expect = 5e-32 Identities = 134/154 (87%) Strand = Plus / Minus Query: 443 cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502 |||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| || Sbjct: 167892 cctgctaaccacaaagtagacagagtctggctttgcctggatggctgtcttggtgaaccc 167833 Query: 503 cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562 |||||| ||||| ||||| | ||||| || |||||||| |||||||||||||| ||||| Sbjct: 167832 cagcttatctgcaggccatagttcatctccaaagaagctacttgtgtagagcacctggtc 167773 Query: 563 acccgacttgagccctgctcttgctgcattccct 596 ||| || || || ||||||||||| || |||||| Sbjct: 167772 acctgatttcaggcctgctcttgccgcgttccct 167739 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 290 ctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgtgt 349 ||||||||| || |||||||| || |||||||||||||||||||||||||| |||||||| Sbjct: 168338 ctgttcttcgaaaggcttgggaaggaagtatatgtatccacaatcaaggcaaatgtgtgt 168279 Query: 350 tgctctagcct 360 ||||||||||| Sbjct: 168278 tgctctagcct 168268 Score = 89.7 bits (45), Expect = 1e-14 Identities = 144/177 (81%) Strand = Plus / Minus Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175 ||||||||||||||||||||||||||||||||||| || || |||||||| | |||||| Sbjct: 168618 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 168559 Query: 176 gactatcacagtaagaggtggcagtgcgccgccaatgggcttcccagactctacgttgta 235 ||| ||||| |||| |||||| || || || ||||| | | |||| | ||| | | || Sbjct: 168558 gacgatcactgtaataggtggtagcgcaccaccaatcgccctcccggtttctgcatcata 168499 Query: 236 tcttgcgaatcgcttctttggtgcattgcactggggacagccgtactcaccaggctg 292 | | ||||| |||||||||||||| ||||| || || ||||| || ||| ||||||| Sbjct: 168498 tttcgcgaaccgcttctttggtgcgttgcattgtgggcagccatattcatcaggctg 168442 Score = 40.1 bits (20), Expect = 8.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 378 ttccggccaaaccgagggggcgccggcctcttgggcaggcgcttcacatcaa 429 ||||||||||| | || ||||||||||| || || || ||||||||||||| Sbjct: 168144 ttccggccaaatctcggaggcgccggccttttcggaagtcgcttcacatcaa 168093
>emb|CT571264.2| Medicago truncatula chromosome 5 clone mth2-146m15, COMPLETE SEQUENCE Length = 141614 Score = 99.6 bits (50), Expect = 1e-17 Identities = 128/154 (83%) Strand = Plus / Minus Query: 443 cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502 |||||| || |||||||| |||||||| ||||| || | ||| ||||| || |||||||| Sbjct: 78151 cctgctgacaacaaagtagacagagtcgggcttagcattgattgctgttttcgtgaatcc 78092 Query: 503 cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562 ||||| ||||| ||||| || ||||| || ||||| ||||| || || || |||||||| Sbjct: 78091 aagcttatctgctggccataattcatctccaaagaaactgctagtatatagaacttggtc 78032 Query: 563 acccgacttgagccctgctcttgctgcattccct 596 || ||||| | |||||||||||||||||||||| Sbjct: 78031 cccggactttaaccctgctcttgctgcattccct 77998 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 315 aagtatatgtatccacaatcaaggcagatgtgtgttgctctagcct 360 |||||||||||||| || |||||||| ||||| || |||||||||| Sbjct: 78988 aagtatatgtatccgcagtcaaggcaaatgtgagtagctctagcct 78943
>dbj|AK060661.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B02, full insert sequence Length = 297 Score = 89.7 bits (45), Expect = 1e-14 Identities = 72/81 (88%) Strand = Plus / Minus Query: 116 agcctattgaaggccatatacaagcaaagcccctatgccagcgatgccgataaccaaact 175 ||||||||||||||||||||||||||||||||||| || || |||||||| | |||||| Sbjct: 116 agcctattgaaggccatatacaagcaaagcccctactccggcaatgccgattatcaaact 57 Query: 176 gactatcacagtaagaggtgg 196 ||| ||||| |||| |||||| Sbjct: 56 gacgatcactgtaataggtgg 36
>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b, complete sequence Length = 45450 Score = 83.8 bits (42), Expect = 6e-13 Identities = 123/150 (82%) Strand = Plus / Plus Query: 443 cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502 |||||| || |||||||| |||||||||||||| |||||||| || || || ||||| || Sbjct: 29887 cctgctgacaacaaagtagacagagtctggcttagcttggattgcggttttagtgaagcc 29946 Query: 503 cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562 ||||| || || |||||||| ||||| || ||||| ||||| || || || |||||||| Sbjct: 29947 aagcttatccgcaggccacaattcatccccaaagaaactgctagtataaaggacttggtc 30006 Query: 563 acccgacttgagccctgctcttgctgcatt 592 || | ||| | ||||||| |||||||||| Sbjct: 30007 ccctgcctttaaccctgcttttgctgcatt 30036 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 317 gtatatgtatccacaatcaaggcagatgtgtgttgctctagcct 360 ||||||| |||||||||||||||| ||||| || |||||||||| Sbjct: 29276 gtatatgaatccacaatcaaggcaaatgtgagtagctctagcct 29319
>ref|NM_121723.3| Arabidopsis thaliana electron transporter/ metal ion binding / protein binding AT5G17170 mRNA, complete cds Length = 1131 Score = 52.0 bits (26), Expect = 0.002 Identities = 125/158 (79%) Strand = Plus / Minus Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498 |||| ||||| || |||||||| ||||| || || ||||| || || || || || || | Sbjct: 631 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 572 Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558 | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| | |||| Sbjct: 571 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 512 Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596 | || || || || ||||||||| ||||||| |||||| Sbjct: 511 gatctccagatttaagccctgcttttgctgcgttccct 474 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Minus Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347 |||||||| ||||| | ||||||| | ||||||| ||||||||||||| || ||||| Sbjct: 779 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 720 Query: 348 gttgctctagccttctg 364 || ||||| |||||||| Sbjct: 719 gtagctcttgccttctg 703
>gb|BT000984.1| Arabidopsis thaliana clone U09484 unknown protein (At5g17170) mRNA, complete cds Length = 847 Score = 52.0 bits (26), Expect = 0.002 Identities = 125/158 (79%) Strand = Plus / Minus Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498 |||| ||||| || |||||||| ||||| || || ||||| || || || || || || | Sbjct: 499 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 440 Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558 | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| | |||| Sbjct: 439 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 380 Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596 | || || || || ||||||||| ||||||| |||||| Sbjct: 379 gatctccagatttaagccctgcttttgctgcgttccct 342 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Minus Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347 |||||||| ||||| | ||||||| | ||||||| ||||||||||||| || ||||| Sbjct: 647 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 588 Query: 348 gttgctctagccttctg 364 || ||||| |||||||| Sbjct: 587 gtagctcttgccttctg 571
>gb|AY035119.1| Arabidopsis thaliana unknown protein (At5g17170) mRNA, complete cds Length = 1100 Score = 52.0 bits (26), Expect = 0.002 Identities = 125/158 (79%) Strand = Plus / Minus Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498 |||| ||||| || |||||||| ||||| || || ||||| || || || || || || | Sbjct: 584 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 525 Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558 | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| | |||| Sbjct: 524 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 465 Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596 | || || || || ||||||||| ||||||| |||||| Sbjct: 464 gatctccagatttaagccctgcttttgctgcgttccct 427 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Minus Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347 |||||||| ||||| | ||||||| | ||||||| ||||||||||||| || ||||| Sbjct: 732 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 673 Query: 348 gttgctctagccttctg 364 || ||||| |||||||| Sbjct: 672 gtagctcttgccttctg 656
>emb|BX831408.1|CNS0A09X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS88ZA11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 817 Score = 52.0 bits (26), Expect = 0.002 Identities = 125/158 (79%) Strand = Plus / Minus Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498 |||| ||||| || |||||||| ||||| || || ||||| || || || || || || | Sbjct: 381 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 322 Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558 | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| | |||| Sbjct: 321 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 262 Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596 | || || || || ||||||||| ||||||| |||||| Sbjct: 261 gatctccagatttaagccctgcttttgctgcgttccct 224 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Minus Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347 |||||||| ||||| | ||||||| | ||||||| ||||||||||||| || ||||| Sbjct: 529 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 470 Query: 348 gttgctctagccttctg 364 || ||||| |||||||| Sbjct: 469 gtagctcttgccttctg 453
>emb|BX830489.1|CNS0A065 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZC12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 976 Score = 52.0 bits (26), Expect = 0.002 Identities = 125/158 (79%) Strand = Plus / Minus Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498 |||| ||||| || |||||||| ||||| || || ||||| || || || || || || | Sbjct: 552 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 493 Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558 | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| | |||| Sbjct: 492 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 433 Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596 | || || || || ||||||||| ||||||| |||||| Sbjct: 432 gatctccagatttaagccctgcttttgctgcgttccct 395 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Minus Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347 |||||||| ||||| | ||||||| | ||||||| ||||||||||||| || ||||| Sbjct: 700 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 641 Query: 348 gttgctctagccttctg 364 || ||||| |||||||| Sbjct: 640 gtagctcttgccttctg 624
>emb|BX829838.1|CNS09ZY3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB40ZA04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 996 Score = 52.0 bits (26), Expect = 0.002 Identities = 125/158 (79%) Strand = Plus / Minus Query: 439 cacccctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtga 498 |||| ||||| || |||||||| ||||| || || ||||| || || || || || || | Sbjct: 631 cacctctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaa 572 Query: 499 atcccagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcactt 558 | || ||||| ||||| ||||| | |||||| || ||||| ||||||||||| | |||| Sbjct: 571 agccaagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaactt 512 Query: 559 ggtcacccgacttgagccctgctcttgctgcattccct 596 | || || || || ||||||||| ||||||| |||||| Sbjct: 511 gatctccagatttaagccctgcttttgctgcgttccct 474 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Minus Query: 288 ggctgttcttcaaagggcttgggtagaaagtatatgtatccacaatcaaggcagatgtgt 347 |||||||| ||||| | ||||||| | ||||||| ||||||||||||| || ||||| Sbjct: 780 ggctgttcgtcaaaagatttgggtaaagtgtatatgaatccacaatcaagacaaatgtga 721 Query: 348 gttgctctagccttctg 364 || ||||| |||||||| Sbjct: 720 gtagctcttgccttctg 704 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 120 tattgaaggccatatacaagcaaagc 145 |||||||| ||||||||||||||||| Sbjct: 953 tattgaagaccatatacaagcaaagc 928
>dbj|AB005238.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11 Length = 75188 Score = 52.0 bits (26), Expect = 0.002 Identities = 122/154 (79%) Strand = Plus / Minus Query: 443 cctgcttactacaaagtatacagagtctggctttgcttggatggctgtcttggtgaatcc 502 |||||| || |||||||| ||||| || || ||||| || || || || || || || || Sbjct: 9046 cctgctaacaacaaagtagacagaatcaggttttgcctgaattgcagttttagtaaagcc 8987 Query: 503 cagcttgtctgccggccacaactcatcaccgaagaagctgcttgtgtagagcacttggtc 562 ||||| ||||| ||||| | |||||| || ||||| ||||||||||| | ||||| || Sbjct: 8986 aagcttatctgcaggccaaagctcatctccaaagaaactgcttgtgtacacaacttgatc 8927 Query: 563 acccgacttgagccctgctcttgctgcattccct 596 || || || ||||||||| ||||||| |||||| Sbjct: 8926 tccagatttaagccctgcttttgctgcgttccct 8893 Score = 40.1 bits (20), Expect = 8.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 317 gtatatgtatccacaatcaaggcagatgtgtgttgctctagcct 360 ||||||| ||||||||||||| || ||||| || ||||| |||| Sbjct: 9657 gtatatgaatccacaatcaagacaaatgtgagtagctcttgcct 9614
>ref|NM_104894.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT1G62130 mRNA, complete cds Length = 3078 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 514 ccggccacaactcatcaccgaagaa 538 |||| |||||||||||||||||||| Sbjct: 1354 ccggacacaactcatcaccgaagaa 1330
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 atgccgataaccaaactgact 179 ||||||||||||||||||||| Sbjct: 241932 atgccgataaccaaactgact 241912
>gb|AC000375.1|F19K23 Sequence of BAC F19K23 from Arabidopsis thaliana chromosome 1, complete sequence Length = 97451 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 514 ccggccacaactcatcaccgaagaa 538 |||| |||||||||||||||||||| Sbjct: 27850 ccggacacaactcatcaccgaagaa 27874
>gb|U26679.1|ABU26679 Azospirillum brasilense lateral flagellin (laf1) gene, complete cds Length = 1573 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ccgagggggcgccggcctctt 409 ||||||||||||||||||||| Sbjct: 1483 ccgagggggcgccggcctctt 1503
>gb|AC004227.1| Homo sapiens chromosome 5, P1 clone 356a8 (LBNL H32), complete sequence Length = 72941 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tattgaaattttctgttaga 46 |||||||||||||||||||| Sbjct: 12397 tattgaaattttctgttaga 12416
>gb|AC137596.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0031H05, complete sequence Length = 141200 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 catggccagaacaaaatttctcaa 105 |||||||||||| ||||||||||| Sbjct: 17747 catggccagaaccaaatttctcaa 17724
>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence Length = 241184 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catcattattgaaattttct 40 |||||||||||||||||||| Sbjct: 124240 catcattattgaaattttct 124259 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catcattattgaaattttct 40 |||||||||||||||||||| Sbjct: 102135 catcattattgaaattttct 102154
>gb|AC117615.11| Mus musculus chromosome 19, clone RP23-110D20, complete sequence Length = 191809 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 gccaatgggcttcccagactctac 229 |||||||||||||||||| ||||| Sbjct: 182397 gccaatgggcttcccagagtctac 182374
>gb|AC117629.16| Mus musculus chromosome 19, clone RP23-179C21, complete sequence Length = 248718 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 gccaatgggcttcccagactctac 229 |||||||||||||||||| ||||| Sbjct: 170916 gccaatgggcttcccagagtctac 170939
>emb|CR391905.6| Zebrafish DNA sequence from clone DKEY-16P7 in linkage group 9, complete sequence Length = 221511 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 attttctgttagatagagta 53 |||||||||||||||||||| Sbjct: 110397 attttctgttagatagagta 110416
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 aagcccctatgccagcgatg 161 |||||||||||||||||||| Sbjct: 3613408 aagcccctatgccagcgatg 3613427
>emb|AL356791.9| Human DNA sequence from clone RP11-80I3 on chromosome 9, complete sequence Length = 101157 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 agatagagtacatgagaaat 63 |||||||||||||||||||| Sbjct: 15461 agatagagtacatgagaaat 15480
>emb|AL035448.29|HS742J24 Human DNA sequence from clone RP4-742J24 on chromosome 20p11.23-12.3 Contains the BTBD3 gene for BTB (POZ) domain containing 3 (KIAA0952), a novel gene and a CpG island, complete sequence Length = 167075 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 atggccagaacaaaatttct 102 |||||||||||||||||||| Sbjct: 13621 atggccagaacaaaatttct 13640
>ref|XM_781195.1| PREDICTED: Strongylocentrotus purpuratus similar to DEP domain containing 5 isoform 2 (LOC581181), mRNA Length = 372 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gtactcaccaggctgttctt 297 |||||||||||||||||||| Sbjct: 356 gtactcaccaggctgttctt 337
>emb|AL590629.16| Mouse DNA sequence from clone RP23-202F23 on chromosome X, complete sequence Length = 171883 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tactcaccaggctgttcttc 298 |||||||||||||||||||| Sbjct: 12522 tactcaccaggctgttcttc 12503
>gb|AC023983.11| Homo sapiens chromosome 18, clone RP11-621L6, complete sequence Length = 190225 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 acagtaagaggtggcagtgc 202 |||||||||||||||||||| Sbjct: 105365 acagtaagaggtggcagtgc 105346
>dbj|AK095052.1| Homo sapiens cDNA FLJ37733 fis, clone BRHIP2020827 Length = 2906 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aaccaaactgactatcacag 186 |||||||||||||||||||| Sbjct: 830 aaccaaactgactatcacag 811
>dbj|AK094349.1| Homo sapiens cDNA FLJ37030 fis, clone BRACE2011183 Length = 2304 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aaccaaactgactatcacag 186 |||||||||||||||||||| Sbjct: 229 aaccaaactgactatcacag 210
>gb|AC092547.7| Homo sapiens 3q BAC RP11-371L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178328 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aaccaaactgactatcacag 186 |||||||||||||||||||| Sbjct: 177289 aaccaaactgactatcacag 177270
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 catggccagaacaaaatttctcaa 105 |||||||||||| ||||||||||| Sbjct: 21561121 catggccagaaccaaatttctcaa 21561098
>gb|AC157277.2| Mus musculus BAC clone RP23-465H15 from chromosome 15, complete sequence Length = 177253 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 aaagggcttgggtagaaagt 318 |||||||||||||||||||| Sbjct: 54024 aaagggcttgggtagaaagt 54005
>gb|AC012449.7| Homo sapiens BAC clone RP11-321K13 from 2, complete sequence Length = 109335 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 acagtaagaggtggcagtgc 202 |||||||||||||||||||| Sbjct: 66769 acagtaagaggtggcagtgc 66750
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 gcttgtctgccggccacaac 524 |||||||||||||||||||| Sbjct: 722560 gcttgtctgccggccacaac 722541
>gb|AC106776.4| Homo sapiens chromosome 5 clone RP11-325M13, complete sequence Length = 114419 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 aaagggcttgggtagaaagt 318 |||||||||||||||||||| Sbjct: 80029 aaagggcttgggtagaaagt 80048
>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0489D11 Length = 150757 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 catggccagaacaaaatttctcaa 105 |||||||||||| ||||||||||| Sbjct: 122731 catggccagaaccaaatttctcaa 122708
>dbj|BS000234.1| Pan troglodytes chromosome 22 clone:PTB-190I13, map 22, complete sequences Length = 174520 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gatgtgtgttgctctagcct 360 |||||||||||||||||||| Sbjct: 29577 gatgtgtgttgctctagcct 29558
>gb|AC134622.3| Mus musculus BAC clone RP23-13I7 from 6, complete sequence Length = 203072 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cctgcttactacaaagtata 462 |||||||||||||||||||| Sbjct: 154790 cctgcttactacaaagtata 154809
>emb|BX927109.13| Zebrafish DNA sequence from clone CH211-80D23 in linkage group 18, complete sequence Length = 169784 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 attttaccccatcattattg 31 |||||||||||||||||||| Sbjct: 103124 attttaccccatcattattg 103105
>emb|BX936417.8| Zebrafish DNA sequence from clone DKEY-231D7 in linkage group 18, complete sequence Length = 151853 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 attttaccccatcattattg 31 |||||||||||||||||||| Sbjct: 65958 attttaccccatcattattg 65977
>gb|AC007510.6|AC007510 Homo sapiens chromosome 17, clone hRPK.678_P_16, complete sequence Length = 156420 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 aaccaaactgactatcacag 186 |||||||||||||||||||| Sbjct: 20009 aaccaaactgactatcacag 20028
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tatgccagcgatgccgataa 168 |||||||||||||||||||| Sbjct: 2207470 tatgccagcgatgccgataa 2207451
>dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, section 95/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gatgtgtgttgctctagcct 360 |||||||||||||||||||| Sbjct: 1276 gatgtgtgttgctctagcct 1257
>emb|AJ617740.1| Pseudomonas putida clc transposon Length = 105027 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 aagcccctatgccagcgatg 161 |||||||||||||||||||| Sbjct: 50709 aagcccctatgccagcgatg 50690
>gb|AC164567.5| Mus musculus BAC clone RP23-64B8 from chromosome 10, complete sequence Length = 262262 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aatttctcaagagatgaaaa 115 |||||||||||||||||||| Sbjct: 172910 aatttctcaagagatgaaaa 172891
>dbj|AP001046.1| Homo sapiens genomic DNA, chromosome 21, clone:KB43F12, MX1-D21S171 region, complete sequence Length = 158063 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gatgtgtgttgctctagcct 360 |||||||||||||||||||| Sbjct: 1276 gatgtgtgttgctctagcct 1257 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,105,946 Number of Sequences: 3902068 Number of extensions: 5105946 Number of successful extensions: 96688 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96429 Number of HSP's gapped (non-prelim): 258 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)