Clone Information

BLAST Search Result

Clone Name	rbah63g07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CUL4B_HUMAN (Q13620) Cullin-4B (CUL-4B)	165	5e-41
2	CUL4A_HUMAN (Q13619) Cullin-4A (CUL-4A)	161	9e-40
3	CUL4_CAEEL (Q17392) Cullin-4	112	6e-25
4	CUL3_MOUSE (Q9JLV5) Cullin-3 (CUL-3)	90	2e-18
5	CUL3_HUMAN (Q13618) Cullin-3 (CUL-3)	90	2e-18
6	CUL1_ARATH (Q94AH6) Cullin-1	89	7e-18
7	CUL3_SCHPO (Q09760) Cullin-3 (Cul-3)	87	3e-17
8	CUL3_CAEEL (Q17391) Cullin-3	86	6e-17
9	CUL4_SCHPO (O14122) Cullin-4 (Cul-4)	80	3e-15
10	CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2)	75	1e-13
11	CUL2_HUMAN (Q13617) Cullin-2 (CUL-2)	75	1e-13
12	CUL2_MOUSE (Q9D4H8) Cullin-2 (CUL-2)	74	2e-13
13	CUL1_SCHPO (O13790) Cullin-1 (Cul-1) (Cell division control 53 h...	72	5e-13
14	CUL2_CAEEL (Q17390) Cullin-2	72	9e-13
15	CUL1_DROME (Q24311) Cullin homolog 1 (Lin-19 homolog protein)	71	2e-12
16	CUL6_CAEEL (Q21346) Cullin-6	70	2e-12
17	CUL1_PONPY (Q5R4G6) Cullin-1 (CUL-1)	69	6e-12
18	CUL1_MOUSE (Q9WTX6) Cullin-1 (CUL-1)	69	6e-12
19	CUL1_HUMAN (Q13616) Cullin-1 (CUL-1)	69	6e-12
20	CUL1_CAEEL (Q17389) Cullin-1 (Abnormal cell lineage protein 19)	65	8e-11
21	CUL3_YEAST (P53202) Cullin-3 (Cullin-B)	55	1e-07
22	CUL5_PONPY (Q5RB36) Cullin-5 (CUL-5)	50	2e-06
23	CUL5_HUMAN (Q93034) Cullin-5 (CUL-5) (Vasopressin-activated calc...	50	2e-06
24	CDC53_YEAST (Q12018) Cell division control protein 53 (Cullin-A)...	50	3e-06
25	CUL5_RAT (Q9JJ31) Cullin-5 (CUL-5) (Vasopressin-activated calciu...	49	5e-06
26	CUL5_MOUSE (Q9D5V5) Cullin-5 (CUL-5)	48	1e-05
27	CUL5_RABIT (Q29425) Cullin-5 (CUL-5) (Vasopressin-activated calc...	46	5e-05
28	CUL5_CAEEL (Q23639) Cullin-5	42	8e-04
29	Y835_RICCN (Q92HD6) Hypothetical UPF0192 protein RC0835 precursor	31	1.3
30	CAF1A_HUMAN (Q13111) Chromatin assembly factor 1 subunit A (CAF-...	31	1.8
31	AROA_BRANA (P17688) 3-phosphoshikimate 1-carboxyvinyltransferase...	30	2.3
32	SYL_MYCGE (P47508) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-...	30	3.9
33	AROA_LYCES (P10748) 3-phosphoshikimate 1-carboxyvinyltransferase...	29	5.1
34	PTHB1_HUMAN (Q3SYG4) Protein PTHB1 (Parathyroid hormone-responsi...	29	6.7
35	AROA2_TOBAC (P23281) 3-phosphoshikimate 1-carboxyvinyltransferas...	29	6.7
36	PEPS_ASPSA (P52719) Carboxypeptidase cpdS precursor (EC 3.4.16.-)	29	6.7
37	AROA1_TOBAC (P23981) 3-phosphoshikimate 1-carboxyvinyltransferas...	29	6.7
38	PTHB1_MOUSE (Q811G0) Protein PTHB1 (Parathyroid hormone-responsi...	28	8.7
39	AROA_PETHY (P11043) 3-phosphoshikimate 1-carboxyvinyltransferase...	28	8.7
40	IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 s...	28	8.7

>CUL4B_HUMAN (Q13620) Cullin-4B (CUL-4B)|
          Length = 895

 Score =  165 bits (418), Expect = 5e-41
 Identities = 77/105 (73%), Positives = 92/105 (87%)
 Frame = -2

Query: 461  VFNEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTL 282
            + N+DF   L+RIK+N IQMKETVEE  STTERVFQDRQYQ+DAAIVRIMK RKTLSH L
Sbjct: 791  ICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNL 850

Query: 281  LITELFQQLKFPIKPADMKKRIESLIDREYLERDRSNPQIYNYLA 147
            L++E++ QLKFP+KPAD+KKRIESLIDR+Y+ERD+ NP  YNY+A
Sbjct: 851  LVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 895

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>CUL4A_HUMAN (Q13619) Cullin-4A (CUL-4A)|
          Length = 659

 Score =  161 bits (407), Expect = 9e-40
 Identities = 75/105 (71%), Positives = 90/105 (85%)
 Frame = -2

Query: 461 VFNEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTL 282
           +FN +F   L+RIK+N IQMKETVEE  STTERVFQDRQYQ+DAAIVRIMK RKTL H L
Sbjct: 555 IFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNL 614

Query: 281 LITELFQQLKFPIKPADMKKRIESLIDREYLERDRSNPQIYNYLA 147
           L++EL+ QLKFP+KP D+KKRIESLIDR+Y+ERD+ NP  Y+Y+A
Sbjct: 615 LVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 659

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>CUL4_CAEEL (Q17392) Cullin-4|
          Length = 840

 Score =  112 bits (279), Expect = 6e-25
 Identities = 53/105 (50%), Positives = 71/105 (67%)
 Frame = -2

Query: 461  VFNEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTL 282
            V N  F+    R+++  + +K  VEE     E V  DRQY++DAA+VRIMK RK L+H  
Sbjct: 736  VVNSKFTEKRCRVRIAQVNIKTAVEETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQT 795

Query: 281  LITELFQQLKFPIKPADMKKRIESLIDREYLERDRSNPQIYNYLA 147
            L+TEL QQL+FP+  AD+KKR+ESLI+REY+ RD      YNY+A
Sbjct: 796  LMTELLQQLRFPVSTADIKKRLESLIEREYISRDPEEASSYNYVA 840

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>CUL3_MOUSE (Q9JLV5) Cullin-3 (CUL-3)|
          Length = 768

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 46/107 (42%), Positives = 72/107 (67%), Gaps = 4/107 (3%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTL 282
           N+ F++ L+R+K+  +  K  E+  E   T ++V  DR+++++AAIVRIMK+RK + H +
Sbjct: 662 NDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNV 721

Query: 281 LITELFQQLK--FPIKPADMKKRIESLIDREYLERDRSNPQIYNYLA 147
           L+ E+ QQLK  F   P  +KKRIE LI+REYL R   + ++Y Y+A
Sbjct: 722 LVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768

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>CUL3_HUMAN (Q13618) Cullin-3 (CUL-3)|
          Length = 768

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 46/107 (42%), Positives = 72/107 (67%), Gaps = 4/107 (3%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTL 282
           N+ F++ L+R+K+  +  K  E+  E   T ++V  DR+++++AAIVRIMK+RK + H +
Sbjct: 662 NDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNV 721

Query: 281 LITELFQQLK--FPIKPADMKKRIESLIDREYLERDRSNPQIYNYLA 147
           L+ E+ QQLK  F   P  +KKRIE LI+REYL R   + ++Y Y+A
Sbjct: 722 LVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768

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>CUL1_ARATH (Q94AH6) Cullin-1|
          Length = 738

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
 Frame = -2

Query: 458 FNEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLL 279
           FN  F+  + RIK+        V+E     E V +DR+Y +DAAIVRIMK+RK L H  L
Sbjct: 637 FNSKFTDRMRRIKIPL----PPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQL 692

Query: 278 ITELFQQLKFPIKP--ADMKKRIESLIDREYLERDRSNPQIYNYLA 147
           ++E  +QL    KP    +KKR+E LI R+YLERD+ NP ++ YLA
Sbjct: 693 VSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738

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>CUL3_SCHPO (Q09760) Cullin-3 (Cul-3)|
          Length = 785

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
 Frame = -2

Query: 458  FNEDFSAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHT 285
            FNE+F + L RIK++ +     E   E   T E+V + R++Q DA IVR+MK RK   H 
Sbjct: 678  FNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHN 737

Query: 284  LLITELFQQL--KFPIKPADMKKRIESLIDREYLERDRSNPQIYNYLA 147
             L+ E+ +QL  +F   P  +K+RIE+LI+REYL+R   N +IY YLA
Sbjct: 738  QLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785

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>CUL3_CAEEL (Q17391) Cullin-3|
          Length = 777

 Score = 85.5 bits (210), Expect = 6e-17
 Identities = 48/106 (45%), Positives = 70/106 (66%), Gaps = 3/106 (2%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMK-ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLL 279
           N++F + L R+KV  +  K E+  E   T ++V  DR+ +V+AAIVRIMK RK L+H  L
Sbjct: 672 NDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNL 731

Query: 278 ITELFQQL--KFPIKPADMKKRIESLIDREYLERDRSNPQIYNYLA 147
           + E+ QQL  +F   P  +K+RIE+LI+REYL RD  + + Y Y+A
Sbjct: 732 VAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEHDHRAYQYIA 777

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>CUL4_SCHPO (O14122) Cullin-4 (Cul-4)|
          Length = 734

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 2/104 (1%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLI 276
           NE F+  LYR+K+N I +KE  +EN+   E+V +DRQ+++ A+IVR+MK ++ + H  L+
Sbjct: 632 NEKFTDKLYRVKINQIYLKEERQENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLV 691

Query: 275 TELFQQLKFPIKP--ADMKKRIESLIDREYLERDRSNPQIYNYL 150
             +   +K    P  +D+K  IE L+++EYLER+ ++  IY Y+
Sbjct: 692 QYVINNVKDRGIPLVSDVKTAIEKLLEKEYLEREDND--IYTYV 733

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>CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2)|
          Length = 745

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLI 276
           N +FS+   + K+     K+T +E   T   V +DR+  + AAIVRIMK RK L H  LI
Sbjct: 641 NMNFSSKRTKFKITTSMQKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALI 700

Query: 275 TELFQQLKFPIKP--ADMKKRIESLIDREYLERDRSNPQIYNYLA 147
            E+  Q +    P  + +KK IE LID++Y+ER +++   Y+Y+A
Sbjct: 701 QEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745

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>CUL2_HUMAN (Q13617) Cullin-2 (CUL-2)|
          Length = 745

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLI 276
           N +FS+   + K+     K+T +E   T   V +DR+  + AAIVRIMK RK L H  LI
Sbjct: 641 NMNFSSKRTKFKITTSMQKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALI 700

Query: 275 TELFQQLKFPIKP--ADMKKRIESLIDREYLERDRSNPQIYNYLA 147
            E+  Q +    P  + +KK IE LID++Y+ER +++   Y+Y+A
Sbjct: 701 QEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745

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>CUL2_MOUSE (Q9D4H8) Cullin-2 (CUL-2)|
          Length = 745

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLI 276
           N  FS+   + K+     K+T +E   T   V +DR+  + AAIVRIMK RK L H  LI
Sbjct: 641 NMSFSSKRTKFKITTSMQKDTPQELEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALI 700

Query: 275 TELFQQLKFPIKP--ADMKKRIESLIDREYLERDRSNPQIYNYLA 147
            E+  Q +    P  + +KK IE LID++Y+ER +++   Y+Y+A
Sbjct: 701 QEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745

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>CUL1_SCHPO (O13790) Cullin-1 (Cul-1) (Cell division control 53 homolog)|
          Length = 767

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLI 276
           NE+F     R+++N     E  +E+  T + + +DR+  + +AIVRIMK R+TL H +L+
Sbjct: 665 NENFRMKKIRVQLNLPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLV 724

Query: 275 TELFQQLK--FPIKPADMKKRIESLIDREYLERDRSNPQIY 159
            E   Q+K  F  K +D+K+ I+ LI++EYLER   +  IY
Sbjct: 725 KETIDQIKSRFTPKVSDIKQCIDMLIEKEYLERQGRDEYIY 765

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>CUL2_CAEEL (Q17390) Cullin-2|
          Length = 776

 Score = 71.6 bits (174), Expect = 9e-13
 Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMKETVE---ENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHT 285
           N   ++   + ++ A Q+ + VE   E  + T +V QDR+Y ++ AIVRIMKTRK L H 
Sbjct: 670 NMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTFQVSQDRKYYMECAIVRIMKTRKVLKHN 729

Query: 284 LLITELFQQLKFPIKP--ADMKKRIESLIDREYLERDRSNPQIYNYLA 147
            L+TE+  Q K    P    +KK IE LI++ Y++R   N + Y YLA
Sbjct: 730 ALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRTDQNDE-YQYLA 776

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>CUL1_DROME (Q24311) Cullin homolog 1 (Lin-19 homolog protein)|
          Length = 774

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
 Frame = -2

Query: 449 DFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITE 270
           D+     RI +N     E   E  +  + + +DR+  + AAIVRIMK RK L+HT LI+E
Sbjct: 672 DYKNKKRRININQPLKTELKVEQETVHKHIEEDRKLLIQAAIVRIMKMRKRLNHTNLISE 731

Query: 269 LFQQLKFPIKP--ADMKKRIESLIDREYLERDRSNPQIYNYLA 147
           +  QL    KP    +KK I+ LI++EYLER   +   Y+YLA
Sbjct: 732 VLNQLSTRFKPKVPVIKKCIDILIEKEYLERMEGHKDTYSYLA 774

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>CUL6_CAEEL (Q21346) Cullin-6|
          Length = 729

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQ-DRQYQVDAAIVRIMKTRKTLSHTLL 279
           N  ++    R+ +     K T +  T   +   + DR+Y++ A IVRIMKTRK+L+HTLL
Sbjct: 624 NTKYANKKVRVDLTTAIKKATADRETDAVQNTVESDRKYEIKACIVRIMKTRKSLTHTLL 683

Query: 278 ITELFQQLKFPIKP--ADMKKRIESLIDREYLERDRSNPQIYNYLA 147
           I E+  QLK    P    +K  IE LI++ Y+ R  +   +Y YLA
Sbjct: 684 INEIISQLKSRFTPNVQMIKICIEILIEQLYIRRSENEHNVYEYLA 729

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>CUL1_PONPY (Q5R4G6) Cullin-1 (CUL-1)|
          Length = 776

 Score = 68.9 bits (167), Expect = 6e-12
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = -2

Query: 428 RIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKF 249
           R+ +N     E  +E  +T + + +DR+  + AAIVRIMK RK L H  L+ E+  QL  
Sbjct: 681 RVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSS 740

Query: 248 PIKP--ADMKKRIESLIDREYLERDRSNPQIYNYLA 147
             KP    +KK I+ LI++EYLER       Y+YLA
Sbjct: 741 RFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776

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>CUL1_MOUSE (Q9WTX6) Cullin-1 (CUL-1)|
          Length = 776

 Score = 68.9 bits (167), Expect = 6e-12
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = -2

Query: 428 RIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKF 249
           R+ +N     E  +E  +T + + +DR+  + AAIVRIMK RK L H  L+ E+  QL  
Sbjct: 681 RVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSS 740

Query: 248 PIKP--ADMKKRIESLIDREYLERDRSNPQIYNYLA 147
             KP    +KK I+ LI++EYLER       Y+YLA
Sbjct: 741 RFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776

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>CUL1_HUMAN (Q13616) Cullin-1 (CUL-1)|
          Length = 776

 Score = 68.9 bits (167), Expect = 6e-12
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = -2

Query: 428 RIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKF 249
           R+ +N     E  +E  +T + + +DR+  + AAIVRIMK RK L H  L+ E+  QL  
Sbjct: 681 RVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSS 740

Query: 248 PIKP--ADMKKRIESLIDREYLERDRSNPQIYNYLA 147
             KP    +KK I+ LI++EYLER       Y+YLA
Sbjct: 741 RFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776

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>CUL1_CAEEL (Q17389) Cullin-1 (Abnormal cell lineage protein 19)|
          Length = 780

 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQMKETVEENTSTTER-VFQDRQYQVDAAIVRIMKTRKTLSHTLL 279
           N+ +     R+ ++   MK+    +T   ++ V +DR+  + A IVRIMKTRK + H  L
Sbjct: 675 NKAYMNKKVRVDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRIMKTRKRVQHQQL 734

Query: 278 ITELFQQLKFPIKP-ADMKKR-IESLIDREYLERDRSNPQIYNYLA 147
           +TE+  QL    KP  +M KR I SLI++EY+ R      +Y YLA
Sbjct: 735 MTEVITQLSGRFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780

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>CUL3_YEAST (P53202) Cullin-3 (Cullin-B)|
          Length = 744

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
 Frame = -2

Query: 455 NEDFSAPLYRIKVNAIQ--MKETVEENTSTTERVF---QDRQYQVDAAIVRIMKTRKTLS 291
           N  FS+P  ++KV  I   +     +N +T   V     +   ++ A IVRIMKT   LS
Sbjct: 635 NYFFSSPNRKVKVPVIACPLPSQKSDNLATASSVDTYDNEIVMELSAIIVRIMKTEGKLS 694

Query: 290 HTLLI--TELFQQLKFPIKPADMKKRIESLIDREYLERDRSNPQIYNYLA 147
           H  L+  T    Q +  + P+ +K+ I+ LI++EY++R+  +P  Y+YL+
Sbjct: 695 HQQLLERTTKRTQSRLSLTPSILKRSIQLLIEKEYIQRNADDPSYYHYLS 744

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>CUL5_PONPY (Q5RB36) Cullin-5 (CUL-5)|
          Length = 780

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
 Frame = -2

Query: 428 RIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKF 249
           R+++   +M+E  EEN    E + Q R  +   AI++IMK RK +S+  L TEL + LK 
Sbjct: 691 RLQLTTERMRE--EEN----EGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKN 744

Query: 248 PIKPAD--MKKRIESLIDREYLERDRSNPQIYNYLA 147
              P    +K++IE LI+ +Y+ RD S+   + Y+A
Sbjct: 745 MFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780

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>CUL5_HUMAN (Q93034) Cullin-5 (CUL-5) (Vasopressin-activated calcium-mobilizing|
           receptor) (VACM-1)
          Length = 780

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
 Frame = -2

Query: 428 RIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKF 249
           R+++   +M+E  EEN    E + Q R  +   AI++IMK RK +S+  L TEL + LK 
Sbjct: 691 RLQLTTERMRE--EEN----EGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKN 744

Query: 248 PIKPAD--MKKRIESLIDREYLERDRSNPQIYNYLA 147
              P    +K++IE LI+ +Y+ RD S+   + Y+A
Sbjct: 745 MFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780

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>CDC53_YEAST (Q12018) Cell division control protein 53 (Cullin-A) (E3 ubiquitin|
           ligase complex SCF subunit CDC53)
          Length = 815

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = -2

Query: 398 ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQ--LKFPIKPADMK 225
           E +E+  +T  ++F      ++A IVRIMK ++ L HT L+ E   Q   +F  K + +K
Sbjct: 737 ERIEKELNTERQIF------LEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVK 790

Query: 224 KRIESLIDREYLERDRSNPQIYNYLA 147
           + I+SLI + YL+R   + + Y YLA
Sbjct: 791 RAIDSLIQKGYLQRG-DDGESYAYLA 815

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>CUL5_RAT (Q9JJ31) Cullin-5 (CUL-5) (Vasopressin-activated calcium-mobilizing|
           receptor) (VACM-1)
          Length = 780

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
 Frame = -2

Query: 428 RIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKF 249
           R+++   +M+E  EEN    E + Q R  +   AI++IMK RK +S+  L TEL + LK 
Sbjct: 691 RLQLTTERMRE--EEN----EGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKN 744

Query: 248 PIKPAD--MKKRIESLIDREYLERDRSNPQIYNYLA 147
              P    +K++IE LI+ +Y+ RD ++   + Y+A
Sbjct: 745 MFLPQKKMIKEQIEWLIEHKYIRRDEADINTFIYMA 780

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>CUL5_MOUSE (Q9D5V5) Cullin-5 (CUL-5)|
          Length = 780

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = -2

Query: 428 RIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKF 249
           R+++   +M+E  EEN    E + Q R  +   AI++IMK RK +S+  L TEL + LK 
Sbjct: 691 RLQLTTERMRE--EEN----EGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKN 744

Query: 248 PIKPAD--MKKRIESLIDREYLERDRSNPQIYNYLA 147
              P    +K+++E LI+  Y+ RD ++   + Y+A
Sbjct: 745 MFLPQKKMIKEQMEWLIEHRYIRRDEADINTFIYMA 780

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>CUL5_RABIT (Q29425) Cullin-5 (CUL-5) (Vasopressin-activated calcium-mobilizing|
           receptor) (VACM-1)
          Length = 780

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
 Frame = -2

Query: 428 RIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKF 249
           R+++   +M+E  EEN    E + Q R  +     ++IMK RK +S+  L TEL + LK 
Sbjct: 691 RLQLTTERMRE--EEN----EGIVQLRILRTRKLYIQIMKMRKKISNAQLQTELVEILKN 744

Query: 248 PIKPAD--MKKRIESLIDREYLERDRSNPQIYNYLA 147
              P    +K++IE LI+ +Y+ RD S+   + Y+A
Sbjct: 745 MFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780

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>CUL5_CAEEL (Q23639) Cullin-5|
          Length = 741

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
 Frame = -2

Query: 428 RIKVNAI-QMKETVEENTSTT-ERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQL 255
           R KVN I +++ ++E N     E +   R+ +V   IV+I+KTRKT +   L  EL + L
Sbjct: 644 RGKVNLIGRLQLSLEANAEKEHESIVALRELRVQEGIVKILKTRKTYTLAQLTMELVEIL 703

Query: 254 K--FPIKPADMKKRIESLIDREYLERDRSNPQIYNYLA 147
           K  F      +K++I+ LI+ +Y+ER   +   + Y++
Sbjct: 704 KPLFIPNRKIIKEQIDWLIENKYMERRADDINTFVYIS 741

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>Y835_RICCN (Q92HD6) Hypothetical UPF0192 protein RC0835 precursor|
          Length = 1892

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
 Frame = -2

Query: 374 TTERVFQDRQYQVDAAIVRIMKTRKTLSHTLLITELFQQLKFPIKPADMK---------- 225
           TT   F+   +   A +V++ +  KT  +  L ++ FQ ++ P  P ++K          
Sbjct: 358 TTMHSFKVDTFASRALLVKVNQGVKTSDNLTLGSDYFQIVQIPDNPKEVKLMSDGSILSL 417

Query: 224 --KR---IESL-IDREYLERDRSNPQIYNYL 150
             KR   + SL ID+ YLE DR N Q  N+L
Sbjct: 418 AGKRKLPVYSLGIDKLYLEIDRINQQEVNHL 448

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>CAF1A_HUMAN (Q13111) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 938

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 347 DDLEILSQWCLCFLLLFPSSELHSPLCDKGE 439
           DDL++L Q+  CFL   P+ E  +P   K E
Sbjct: 681 DDLKVLQQFAACFLETLPAQEEQTPKASKRE 711

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>AROA_BRANA (P17688) 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast|
           precursor (EC 2.5.1.19)
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase)
          Length = 516

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 161 ISGGYSGLSPGTPCRSGSLFSSSYPLA*SGTSAAGKAQLLEGCG 292
           + GG    SPG     G   S+SY LA  G +  G+   +EGCG
Sbjct: 307 VKGGQKYKSPGNAYVEGDASSASYFLA--GAAITGETVTVEGCG 348

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>SYL_MYCGE (P47508) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 792

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 2   NSFVYRNVATATTPRERTKEQQYAITLQCVSDNKIKLT 115
           NSF Y  + T        KE Q AIT + +S NK KLT
Sbjct: 369 NSFAYNGLTT--------KEAQVAITNELISQNKAKLT 398

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>AROA_LYCES (P10748) 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast|
           precursor (EC 2.5.1.19)
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase)
          Length = 520

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 161 ISGGYSGLSPGTPCRSGSLFSSSYPLA*SGTSAAGKAQLLEGCG 292
           + GG    SPG     G   S+SY LA  G +  G    +EGCG
Sbjct: 311 VKGGQKYKSPGKAFVEGDASSASYFLA--GAAVTGGTVTVEGCG 352

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>PTHB1_HUMAN (Q3SYG4) Protein PTHB1 (Parathyroid hormone-responsive B1 gene|
           protein) (Bardet-Biedl syndrome 9 protein)
          Length = 887

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 338 VDAAIVRIMKTRKTLSHTLLITELFQQLKFPIKPADMKKRIESLIDR 198
           VDAAI  ++KT  + S       L  QL  P   + +KK I  L DR
Sbjct: 772 VDAAISHLLKTCLSKSSKEQALNLNSQLNIPKDTSQLKKHITLLCDR 818

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>AROA2_TOBAC (P23281) 3-phosphoshikimate 1-carboxyvinyltransferase 2 (EC|
           2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase
           2) (EPSP synthase 2) (Fragment)
          Length = 338

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 161 ISGGYSGLSPGTPCRSGSLFSSSYPLA*SGTSAAGKAQLLEGCG 292
           + GG    SPG     G   S+SY LA  G +  G    +EGCG
Sbjct: 129 VRGGQKYKSPGKAYVEGDASSASYFLA--GAAVTGGTVTVEGCG 170

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>PEPS_ASPSA (P52719) Carboxypeptidase cpdS precursor (EC 3.4.16.-)|
          Length = 523

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = +2

Query: 14  YRNVATATTPRERTKEQQYAITLQCVSDNKIKLT*HLFHGNAAIKPDNCISGGYSGLSPG 193
           +R+VA+   P ER       +T         K    L +G +  + D  +   Y+GL P 
Sbjct: 33  HRSVASRAVPVERRSNDFEYLTN--------KTARFLVNGTSIPEVDFDVGESYAGLLPN 84

Query: 194 TPCRSGSLFSSSYP 235
           TP  + SLF   +P
Sbjct: 85  TPTGNSSLFFWFFP 98

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>AROA1_TOBAC (P23981) 3-phosphoshikimate 1-carboxyvinyltransferase 1,|
           chloroplast precursor (EC 2.5.1.19)
           (5-enolpyruvylshikimate-3-phosphate synthase 1) (EPSP
           synthase 1)
          Length = 518

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 161 ISGGYSGLSPGTPCRSGSLFSSSYPLA*SGTSAAGKAQLLEGCG 292
           + GG    SPG     G   S+SY LA  G +  G    +EGCG
Sbjct: 309 VRGGQKYKSPGKAYVEGDASSASYFLA--GAAVTGGTVTVEGCG 350

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>PTHB1_MOUSE (Q811G0) Protein PTHB1 (Parathyroid hormone-responsive B1 gene|
           protein homolog)
          Length = 885

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 338 VDAAIVRIMKTRKTLSHTLLITELFQQLKFPIKPADMKKRIESLIDR 198
           VDAAI  ++KT  + S       L  QL  P   + +KK I  L DR
Sbjct: 771 VDAAIAYLLKTCLSKSSKEQALNLSSQLNIPKDTSRLKKHITLLCDR 817

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>AROA_PETHY (P11043) 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast|
           precursor (EC 2.5.1.19)
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase)
          Length = 516

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 161 ISGGYSGLSPGTPCRSGSLFSSSYPLA*SGTSAAGKAQLLEGCG 292
           + GG    SPG     G   S+SY LA  G +  G    +EGCG
Sbjct: 307 VRGGQKYKSPGKAFVEGDASSASYFLA--GAAVTGGTITVEGCG 348

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>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10|
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114)
          Length = 987

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
 Frame = -2

Query: 413 AIQMKETVEENTSTTERVFQDRQYQVDAAIVRI-----MKTRKTLSHTLLITELFQ---- 261
           A  + E   +     ER F +R+ Q +  + +      +K +  LS  L   E+FQ    
Sbjct: 699 AAPLIEAAYQRRLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVI 758

Query: 260 ---QLKFPIKPADMKKRIESLIDREYLERDRSNPQIY 159
              Q +F     + ++RI  +I  +  ERD    QIY
Sbjct: 759 SRRQAEFDRIRTEREERISKIIREKKQERDIKRKQIY 795


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,315,922
Number of Sequences: 219361
Number of extensions: 1132320
Number of successful extensions: 3268
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 3189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3248
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result