ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63g07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK059186.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G09, full insert sequence Length = 611 Score = 369 bits (186), Expect = 5e-99 Identities = 285/318 (89%) Strand = Plus / Minus Query: 144 tcaagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtc 203 ||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 470 tcaagccaggtaattgtagatctgggggttactcctgtctctctccaggtactccctgtc 411 Query: 204 gatcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctgctg 263 ||| |||||||||||||| ||||| ||||||| |||||| || |||||||| |||||||| Sbjct: 410 gattaggctctctattcttttcttgatatccgatggcttgattgggaacttgagctgctg 351 Query: 264 gaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaac 323 |||||||||||||||||||| ||||||||||| ||||| | |||||||| |||||||| Sbjct: 350 aaaaagctcagttattagaagcgtgtggctgagggttttacgtgtcttcattattcgaac 291 Query: 324 tatggccgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtt 383 |||||| ||||| ||||||||||| | || || |||||||||||||| ||||||||||| Sbjct: 290 tatggcagcatccacctgatactgtctgtcctggaatactctctcagttgtgcttgtgtt 231 Query: 384 ttcttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagcact 443 |||||| || || |||||||||||||| |||||||||||||||||||| || || ||||| Sbjct: 230 ttcttcaaccgtctccttcatctgaatagcattcacctttatgcgatagagaggggcact 171 Query: 444 aaaatcttcattaaatac 461 ||| |||||||||||||| Sbjct: 170 aaattcttcattaaatac 153
>gb|BT018674.1| Zea mays clone EL01N0510E08.d mRNA sequence Length = 1769 Score = 353 bits (178), Expect = 3e-94 Identities = 283/318 (88%) Strand = Plus / Minus Query: 144 tcaagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtc 203 |||||||||||| ||||| |||||||||||||||| ||| | |||||||||||||| ||| Sbjct: 1522 tcaagccagatagttgtagatctgggggttactcctgtcccgctccaggtactcccggtc 1463 Query: 204 gatcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctgctg 263 || | |||||||||||| ||||| ||||| |||||||||| |||||||| |||||||| Sbjct: 1462 tattaagctctctattcttttcttgatatcagctggcttaacagggaacttaagctgctg 1403 Query: 264 gaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaac 323 | ||||||| |||||||||||||||||||| || |||| ||||||||| |||||||| Sbjct: 1402 gtaaagctcggttattagaagggtgtggctcaggaccttccgcgtcttcattattcgaac 1343 Query: 324 tatggccgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtt 383 |||||||||||||||||||||||| ||||| || || ||||||||||||||||| ||||| Sbjct: 1342 tatggccgcatcaacctgatactgccgatcctggaacactctctcagtggtgctcgtgtt 1283 Query: 384 ttcttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagcact 443 ||||||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 1282 ttcttctaccgtctccttcatttgaattgcatttacctttatgcgatagaggggagcact 1223 Query: 444 aaaatcttcattaaatac 461 |||||||||||| ||||| Sbjct: 1222 aaaatcttcattgaatac 1205
>gb|AY105209.1| Zea mays PCO104930 mRNA sequence Length = 1490 Score = 353 bits (178), Expect = 3e-94 Identities = 283/318 (88%) Strand = Plus / Minus Query: 144 tcaagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtc 203 |||||||||||| ||||| |||||||||||||||| ||| | |||||||||||||| ||| Sbjct: 1302 tcaagccagatagttgtagatctgggggttactcctgtcccgctccaggtactcccggtc 1243 Query: 204 gatcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctgctg 263 || | |||||||||||| ||||| ||||| |||||||||| |||||||| |||||||| Sbjct: 1242 tattaagctctctattcttttcttgatatcagctggcttaacagggaacttaagctgctg 1183 Query: 264 gaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaac 323 | ||||||| |||||||||||||||||||| || |||| ||||||||| |||||||| Sbjct: 1182 gtaaagctcggttattagaagggtgtggctcaggaccttccgcgtcttcattattcgaac 1123 Query: 324 tatggccgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtt 383 |||||||||||||||||||||||| ||||| || || ||||||||||||||||| ||||| Sbjct: 1122 tatggccgcatcaacctgatactgccgatcctggaacactctctcagtggtgctcgtgtt 1063 Query: 384 ttcttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagcact 443 ||||||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 1062 ttcttctaccgtctccttcatttgaattgcatttacctttatgcgatagaggggagcact 1003 Query: 444 aaaatcttcattaaatac 461 |||||||||||| ||||| Sbjct: 1002 aaaatcttcattgaatac 985
>gb|DQ431854.1| Oryza sativa cullin mRNA, partial cds Length = 545 Score = 345 bits (174), Expect = 8e-92 Identities = 283/318 (88%), Gaps = 1/318 (0%) Strand = Plus / Minus Query: 144 tcaagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtc 203 ||||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||||| Sbjct: 441 tcaagccaggtaattgtagatctgggg-ttactcctgtctctctccaggtactccctgtc 383 Query: 204 gatcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctgctg 263 ||| |||||||||||||| ||||| ||||||| |||||| || |||||||| |||||||| Sbjct: 382 gattaggctctctattcttttcttgatatccgatggcttgattgggaacttgagctgctg 323 Query: 264 gaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaac 323 |||||||||||||||||||| ||||||||||| ||||| | |||||||| |||||||| Sbjct: 322 aaaaagctcagttattagaagcgtgtggctgagggttttacgtgtcttcattattcgaac 263 Query: 324 tatggccgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtt 383 |||||| ||||| ||||||||||| | || || |||||||||||||| ||||||||||| Sbjct: 262 tatggcagcatccacctgatactgtctgtcctggaatactctctcagttgtgcttgtgtt 203 Query: 384 ttcttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagcact 443 |||||| || | |||||||||||||| |||||||||||||||||||| || || ||||| Sbjct: 202 ttcttcaaccgcctccttcatctgaatagcattcacctttatgcgatagagaggggcact 143 Query: 444 aaaatcttcattaaatac 461 ||| |||||||||||||| Sbjct: 142 aaattcttcattaaatac 125
>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence Length = 145507 Score = 153 bits (77), Expect = 6e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 144 tcaagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtc 203 ||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 27031 tcaagccaggtaattgtagatctgggggttactcctgtctctctccaggtactccctgtc 26972 Query: 204 gatcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctg 260 ||| |||||||||||||| ||||| ||||||| |||||| || |||||||| ||||| Sbjct: 26971 gattaggctctctattcttttcttgatatccgatggcttgattgggaacttgagctg 26915 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 258 ctgctggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataat 317 |||||| |||||||||||||||||||| ||||||||||| ||||| | |||||||| || Sbjct: 26831 ctgctgaaaaagctcagttattagaagcgtgtggctgagggttttacgtgtcttcattat 26772 Query: 318 tcgaactatggccgcatcaacctg 341 |||||||||||| ||||| ||||| Sbjct: 26771 tcgaactatggcagcatccacctg 26748 Score = 89.7 bits (45), Expect = 8e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 337 acctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtt 396 ||||||||||| | || || |||||||||||||| ||||||||||||||||| || || Sbjct: 26335 acctgatactgtctgtcctggaatactctctcagttgtgcttgtgttttcttcaaccgtc 26276 Query: 397 tccttcatctgaattgcattcacct 421 |||||||||||||| |||||||||| Sbjct: 26275 tccttcatctgaatagcattcacct 26251 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 418 acctttatgcgataaaggggagcactaaaatcttcattaaatac 461 |||||||||||||| || || |||||||| |||||||||||||| Sbjct: 26159 acctttatgcgatagagaggggcactaaattcttcattaaatac 26116
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 153 bits (77), Expect = 6e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 144 tcaagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtc 203 ||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 32374903 tcaagccaggtaattgtagatctgggggttactcctgtctctctccaggtactccctgtc 32374844 Query: 204 gatcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctg 260 ||| |||||||||||||| ||||| ||||||| |||||| || |||||||| ||||| Sbjct: 32374843 gattaggctctctattcttttcttgatatccgatggcttgattgggaacttgagctg 32374787 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 258 ctgctggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataat 317 |||||| |||||||||||||||||||| ||||||||||| ||||| | |||||||| || Sbjct: 32374703 ctgctgaaaaagctcagttattagaagcgtgtggctgagggttttacgtgtcttcattat 32374644 Query: 318 tcgaactatggccgcatcaacctg 341 |||||||||||| ||||| ||||| Sbjct: 32374643 tcgaactatggcagcatccacctg 32374620 Score = 89.7 bits (45), Expect = 8e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 337 acctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtt 396 ||||||||||| | || || |||||||||||||| ||||||||||||||||| || || Sbjct: 32374207 acctgatactgtctgtcctggaatactctctcagttgtgcttgtgttttcttcaaccgtc 32374148 Query: 397 tccttcatctgaattgcattcacct 421 |||||||||||||| |||||||||| Sbjct: 32374147 tccttcatctgaatagcattcacct 32374123 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 418 acctttatgcgataaaggggagcactaaaatcttcattaaatac 461 |||||||||||||| || || |||||||| |||||||||||||| Sbjct: 32374031 acctttatgcgatagagaggggcactaaattcttcattaaatac 32373988
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 153 bits (77), Expect = 6e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 144 tcaagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtc 203 ||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 32465413 tcaagccaggtaattgtagatctgggggttactcctgtctctctccaggtactccctgtc 32465354 Query: 204 gatcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctg 260 ||| |||||||||||||| ||||| ||||||| |||||| || |||||||| ||||| Sbjct: 32465353 gattaggctctctattcttttcttgatatccgatggcttgattgggaacttgagctg 32465297 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 258 ctgctggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataat 317 |||||| |||||||||||||||||||| ||||||||||| ||||| | |||||||| || Sbjct: 32465213 ctgctgaaaaagctcagttattagaagcgtgtggctgagggttttacgtgtcttcattat 32465154 Query: 318 tcgaactatggccgcatcaacctg 341 |||||||||||| ||||| ||||| Sbjct: 32465153 tcgaactatggcagcatccacctg 32465130 Score = 89.7 bits (45), Expect = 8e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 337 acctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtt 396 ||||||||||| | || || |||||||||||||| ||||||||||||||||| || || Sbjct: 32464717 acctgatactgtctgtcctggaatactctctcagttgtgcttgtgttttcttcaaccgtc 32464658 Query: 397 tccttcatctgaattgcattcacct 421 |||||||||||||| |||||||||| Sbjct: 32464657 tccttcatctgaatagcattcacct 32464633 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 418 acctttatgcgataaaggggagcactaaaatcttcattaaatac 461 |||||||||||||| || || |||||||| |||||||||||||| Sbjct: 32464541 acctttatgcgatagagaggggcactaaattcttcattaaatac 32464498
>gb|AY059387.2| Olea europaea putative cullin protein mRNA, complete cds Length = 2640 Score = 113 bits (57), Expect = 5e-22 Identities = 209/257 (81%), Gaps = 2/257 (0%) Strand = Plus / Minus Query: 186 ctccaggtactccctgtcgatcaggctctctattctcttcttcatatccgctggcttaat 245 |||||||||||||||||| || |||||||| || |||||||||| || ||||| || || Sbjct: 2410 ctccaggtactccctgtctattaggctctcaatcctcttcttcaagtc-gctggttttat 2352 Query: 246 cgggaac-ttcagctgctggaaaagctcagttattagaagggtgtggctgagtgttttcc 304 |||||| || |||||||| || || || ||||| | || |||||||| | | ||||| Sbjct: 2351 ggggaaccttgagctgctgaaagagttcggttatcaagagtgtgtggctcaatactttcc 2292 Query: 305 tcgtcttcataattcgaactatggccgcatcaacctgatactgacgatcttgaaatactc 364 | ||||||||||| ||||| || || ||||||||||| || || || ||||||||||| | Sbjct: 2291 ttgtcttcataatccgaacaatagcagcatcaacctggtattgccggtcttgaaataccc 2232 Query: 365 tctcagtggtgcttgtgttttcttctactgtttccttcatctgaattgcattcaccttta 424 ||||||| ||||| | || || || || ||||||||||||||||| || || ||||||| Sbjct: 2231 tctcagtagtgctagcattctcctcaacggtttccttcatctgaatggcgtttaccttta 2172 Query: 425 tgcgataaaggggagca 441 | ||||| || |||||| Sbjct: 2171 tacgatagagaggagca 2155
>emb|Y16124.1|LES16124 Lycopersicon esculentum mRNA for putative cullin protein Length = 2344 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||||||| ||||| || || ||||||||||||||||| ||||||||||| || || Sbjct: 2004 gcatcaacctggtactgccggtcctgaaatactctctcagtagtgcttgtgttctcctca 1945 Query: 391 actgtttccttcatctgaattgcattcacctttatgcgataaaggggagcactaaa 446 ||||||||||||||||| || ||||| |||||||| ||||| || |||||| |||| Sbjct: 1944 actgtttccttcatctggatggcatttacctttatacgatatagtggagcagtaaa 1889
>ref|NM_123990.2| Arabidopsis thaliana CUL4 AT5G46210 (CUL4) mRNA, complete cds Length = 2687 Score = 109 bits (55), Expect = 8e-21 Identities = 235/295 (79%) Strand = Plus / Minus Query: 146 aagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtcga 205 |||| ||||||||||||||||| ||||| || || ||||||| || || | |||| Sbjct: 2534 aagcaagataattgtatatctgagggttgcttttttccctctccaaatattctcgatcga 2475 Query: 206 tcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctgctgga 265 ||| |||||| || |||||||||| ||| || ||||| |||||||| || ||||| |||| Sbjct: 2474 tcaagctctcaatcctcttcttcagatcagcaggctttatcgggaatttgagctgttgga 2415 Query: 266 aaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaacta 325 | |||||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct: 2414 agagctcagtgattagaagagtatggctcaagacttttcttgtcttcataatacgaacaa 2355 Query: 326 tggccgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtttt 385 |||| ||||| | ||| || || || || || |||||||| || || || |||||||| | Sbjct: 2354 tggctgcatcgatctggtattgtcggtcctggaatactctttccgttgtacttgtgttct 2295 Query: 386 cttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagc 440 | |||||||| || |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 2294 cctctactgtctctttcatctggatcgcatttaccttaatgcgatacagcggagc 2240
>gb|AY091113.1| Arabidopsis thaliana putative cullin (At5g46210) mRNA, complete cds Length = 2678 Score = 109 bits (55), Expect = 8e-21 Identities = 235/295 (79%) Strand = Plus / Minus Query: 146 aagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtcga 205 |||| ||||||||||||||||| ||||| || || ||||||| || || | |||| Sbjct: 2534 aagcaagataattgtatatctgagggttgcttttttccctctccaaatattctcgatcga 2475 Query: 206 tcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctgctgga 265 ||| |||||| || |||||||||| ||| || ||||| |||||||| || ||||| |||| Sbjct: 2474 tcaagctctcaatcctcttcttcagatcagcaggctttatcgggaatttgagctgttgga 2415 Query: 266 aaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaacta 325 | |||||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct: 2414 agagctcagtgattagaagagtatggctcaagacttttcttgtcttcataatacgaacaa 2355 Query: 326 tggccgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtttt 385 |||| ||||| | ||| || || || || || |||||||| || || || |||||||| | Sbjct: 2354 tggctgcatcgatctggtattgtcggtcctggaatactctttccgttgtacttgtgttct 2295 Query: 386 cttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagc 440 | |||||||| || |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 2294 cctctactgtctctttcatctggatcgcatttaccttaatgcgatacagcggagc 2240
>emb|AJ318018.1|ATH318018 Arabidopsis thaliana mRNA for cullin 4 (cul4 gene) Length = 2547 Score = 109 bits (55), Expect = 8e-21 Identities = 235/295 (79%) Strand = Plus / Minus Query: 146 aagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtcga 205 |||| ||||||||||||||||| ||||| || || ||||||| || || | |||| Sbjct: 2398 aagcaagataattgtatatctgagggttgcttttttccctctccaaatattctcgatcga 2339 Query: 206 tcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctgctgga 265 ||| |||||| || |||||||||| ||| || ||||| |||||||| || ||||| |||| Sbjct: 2338 tcaagctctcaatcctcttcttcagatcagcaggctttatcgggaatttgagctgttgga 2279 Query: 266 aaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaacta 325 | |||||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct: 2278 agagctcagtgattagaagagtatggctcaagacttttcttgtcttcataatacgaacaa 2219 Query: 326 tggccgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtttt 385 |||| ||||| | ||| || || || || || |||||||| || || || |||||||| | Sbjct: 2218 tggctgcatcgatctggtattgtcggtcctggaatactctttccgttgtacttgtgttct 2159 Query: 386 cttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagc 440 | |||||||| || |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 2158 cctctactgtctctttcatctggatcgcatttaccttaatgcgatacagcggagc 2104
>gb|AY084267.1| Arabidopsis thaliana clone 101723 mRNA, complete sequence Length = 2518 Score = 109 bits (55), Expect = 8e-21 Identities = 235/295 (79%) Strand = Plus / Minus Query: 146 aagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtcga 205 |||| ||||||||||||||||| ||||| || || ||||||| || || | |||| Sbjct: 2398 aagcaagataattgtatatctgagggttgcttttttccctctccaaatattctcgatcga 2339 Query: 206 tcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctgctgga 265 ||| |||||| || |||||||||| ||| || ||||| |||||||| || ||||| |||| Sbjct: 2338 tcaagctctcaatcctcttcttcagatcagcaggctttatcgggaatttgagctgttgga 2279 Query: 266 aaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaacta 325 | |||||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct: 2278 agagctcagtgattagaagagtatggctcaagacttttcttgtcttcataatacgaacaa 2219 Query: 326 tggccgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtttt 385 |||| ||||| | ||| || || || || || |||||||| || || || |||||||| | Sbjct: 2218 tggctgcatcgatctggtattgtcggtcctggaatactctttccgttgtacttgtgttct 2159 Query: 386 cttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagc 440 | |||||||| || |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 2158 cctctactgtctctttcatctggatcgcatttaccttaatgcgatacagcggagc 2104
>gb|DQ159976.1| Polaskia chichipe microsatellite Pchi40 sequence Length = 850 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 337 acctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtt 396 |||||||| ||||| || ||||| ||||||||||| ||||||||||| ||||| || ||| Sbjct: 605 acctgatattgacggtcctgaaacactctctcagtagtgcttgtgttctcttccaccgtt 664 Query: 397 tccttcatctgaattgcatt 416 || ||||||||||||||||| Sbjct: 665 tctttcatctgaattgcatt 684
>ref|XM_615307.2| PREDICTED: Bos taurus similar to Cullin-4B (CUL-4B) (LOC541254), mRNA Length = 1443 Score = 81.8 bits (41), Expect = 2e-12 Identities = 104/125 (83%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 697 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 638 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | ||||||||||||||| || ||||| || | | |||||| || ||||| ||||||| Sbjct: 637 gtctatcttgaaatactctttctgtggtactagcttgttcttcaaccgtttctttcatct 578 Query: 407 gaatt 411 ||||| Sbjct: 577 gaatt 573
>ref|XM_228689.3| PREDICTED: Rattus norvegicus similar to cullin 4B (LOC302502), mRNA Length = 3429 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 280 agaagggtgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacc 339 |||||| ||||||| |||||||| ||| ||||||||||||| || || || ||||||| Sbjct: 2902 agaaggttgtggctaagtgtttttctcatcttcataattcggacgatcgcagcatcaatt 2843 Query: 340 tgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttcc 399 || ||||| | ||||||||||||||| || || ||||||| | |||||| || ||||| Sbjct: 2842 tggtactgtctatcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttct 2783 Query: 400 ttcatctg 407 |||||||| Sbjct: 2782 ttcatctg 2775
>ref|NM_003588.2| Homo sapiens cullin 4B (CUL4B), mRNA Length = 3278 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 3001 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2942 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2941 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2882 Query: 407 g 407 | Sbjct: 2881 g 2881
>gb|AY365125.1| Homo sapiens cullin 4B (CUL4B) mRNA, complete cds Length = 2688 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2545 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2486 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2485 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2426 Query: 407 g 407 | Sbjct: 2425 g 2425
>gb|BC004026.1| Mus musculus cullin 4B, mRNA (cDNA clone MGC:7617 IMAGE:3494708), complete cds Length = 3105 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2890 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2831 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2830 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2771 Query: 407 g 407 | Sbjct: 2770 g 2770
>gb|BC010347.1| Mus musculus cullin 4B, mRNA (cDNA clone IMAGE:3707849), complete cds Length = 1568 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 1028 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 969 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 968 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 909 Query: 407 g 407 | Sbjct: 908 g 908
>gb|AY330868.1| Mus musculus cullin 4B mRNA, complete cds Length = 3346 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2843 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2784 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2783 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2724 Query: 407 g 407 | Sbjct: 2723 g 2723
>emb|BX537787.1|HSM805877 Homo sapiens mRNA; cDNA DKFZp779P1063 (from clone DKFZp779P1063); complete cds Length = 5164 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2860 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2801 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2800 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2741 Query: 407 g 407 | Sbjct: 2740 g 2740
>gb|BC036216.1| Homo sapiens cullin 4B, mRNA (cDNA clone MGC:39677 IMAGE:5269392), complete cds Length = 3278 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 3001 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2942 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2941 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2882 Query: 407 g 407 | Sbjct: 2881 g 2881
>emb|CR936722.1| Homo sapiens mRNA; cDNA DKFZp686F1470 (from clone DKFZp686F1470) Length = 5162 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2869 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2810 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2809 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2750 Query: 407 g 407 | Sbjct: 2749 g 2749
>dbj|AK123688.1| Homo sapiens cDNA FLJ41694 fis, clone HCHON2001217, highly similar to Homo sapiens cullin CUL4B (CUL4B) mRNA Length = 2924 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2713 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2654 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2653 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2594 Query: 407 g 407 | Sbjct: 2593 g 2593
>emb|CR603224.1| full-length cDNA clone CS0DL008YI17 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2493 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 244 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 185 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 184 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 125 Query: 407 g 407 | Sbjct: 124 g 124
>dbj|AK160998.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4022434I07 product:cullin 4B, full insert sequence Length = 3112 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2612 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2553 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2552 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2493 Query: 407 g 407 | Sbjct: 2492 g 2492
>ref|XM_702943.1| PREDICTED: Danio rerio similar to Cullin-4B (CUL-4B), transcript variant 4 (LOC560313), mRNA Length = 4117 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 289 tggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatactga 348 |||||||| ||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct: 2874 tggctgagagttttcctcatcttcatgattcgaacaatggcagcatcgatttggtactga 2815 Query: 349 cgatcttgaaatactctctcagtggtgct 377 ||||| || ||||||||||| || ||||| Sbjct: 2814 cgatcctggaatactctctctgtagtgct 2786
>ref|XM_702942.1| PREDICTED: Danio rerio similar to Cullin-4B (CUL-4B), transcript variant 3 (LOC560313), mRNA Length = 4141 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 289 tggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatactga 348 |||||||| ||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct: 2898 tggctgagagttttcctcatcttcatgattcgaacaatggcagcatcgatttggtactga 2839 Query: 349 cgatcttgaaatactctctcagtggtgct 377 ||||| || ||||||||||| || ||||| Sbjct: 2838 cgatcctggaatactctctctgtagtgct 2810
>ref|XM_702941.1| PREDICTED: Danio rerio similar to Cullin-4B (CUL-4B), transcript variant 2 (LOC560313), mRNA Length = 4036 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 289 tggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatactga 348 |||||||| ||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct: 2793 tggctgagagttttcctcatcttcatgattcgaacaatggcagcatcgatttggtactga 2734 Query: 349 cgatcttgaaatactctctcagtggtgct 377 ||||| || ||||||||||| || ||||| Sbjct: 2733 cgatcctggaatactctctctgtagtgct 2705
>ref|XM_680523.1| PREDICTED: Danio rerio similar to Cullin-4B (CUL-4B), transcript variant 1 (LOC560313), mRNA Length = 4099 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 289 tggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatactga 348 |||||||| ||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct: 2856 tggctgagagttttcctcatcttcatgattcgaacaatggcagcatcgatttggtactga 2797 Query: 349 cgatcttgaaatactctctcagtggtgct 377 ||||| || ||||||||||| || ||||| Sbjct: 2796 cgatcctggaatactctctctgtagtgct 2768
>dbj|AK164640.1| Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530008P12 product:cullin 4B, full insert sequence Length = 2372 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 218 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 159 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 158 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 99 Query: 407 g 407 | Sbjct: 98 g 98
>dbj|AK170632.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630111G02 product:cullin 4B, full insert sequence Length = 3105 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2899 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2840 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2839 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2780 Query: 407 g 407 | Sbjct: 2779 g 2779
>dbj|AK032701.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720405B21 product:cullin 4B, full insert sequence Length = 3049 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2843 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2784 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2783 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2724 Query: 407 g 407 | Sbjct: 2723 g 2723
>dbj|AK012410.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700050M05 product:cullin 4B, full insert sequence Length = 3108 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2605 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2546 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2545 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2486 Query: 407 g 407 | Sbjct: 2485 g 2485
>gb|AF212995.1|AF212995 Homo sapiens cullin CUL4B (CUL4B) mRNA, complete cds Length = 2810 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2615 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2556 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2555 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2496 Query: 407 g 407 | Sbjct: 2495 g 2495
>emb|BX004980.8| Zebrafish DNA sequence from clone DKEY-15N5 in linkage group 14, complete sequence Length = 159333 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 289 tggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatactga 348 |||||||| ||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct: 102358 tggctgagagttttcctcatcttcatgattcgaacaatggcagcatcgatttggtactga 102417 Query: 349 cgatcttgaaatactctctcagtggtgct 377 ||||| || ||||||||||| || ||||| Sbjct: 102418 cgatcctggaatactctctctgtagtgct 102446
>gb|AY890520.1| Synthetic construct Homo sapiens clone FLH135354.01X cullin 4B (CUL4B) mRNA, complete cds Length = 2742 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2599 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2540 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2539 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2480 Query: 407 g 407 | Sbjct: 2479 g 2479
>emb|BX647096.1|HSM807240 Homo sapiens mRNA; cDNA DKFZp686H07166 (from clone DKFZp686H07166) Length = 5172 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2869 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2810 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2809 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2750 Query: 407 g 407 | Sbjct: 2749 g 2749
>dbj|AB093259.1| Mus musculus mRNA for mKIAA0695 protein Length = 5167 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 4961 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 4902 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 4901 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 4842 Query: 407 g 407 | Sbjct: 4841 g 4841
>emb|BX537641.1|HSM806460 Homo sapiens mRNA; cDNA DKFZp686D0844 (from clone DKFZp686D0844) Length = 7394 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 5091 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 5032 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 5031 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 4972 Query: 407 g 407 | Sbjct: 4971 g 4971
>gb|U58091.1|HSU58091 Human Hs-cul-4B mRNA, partial cds Length = 932 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 725 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 666 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 665 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 606 Query: 407 g 407 | Sbjct: 605 g 605
>ref|NM_028288.3| Mus musculus cullin 4B (Cul4b), mRNA Length = 3346 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2843 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2784 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2783 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2724 Query: 407 g 407 | Sbjct: 2723 g 2723
>dbj|AB014595.2| Homo sapiens mRNA for KIAA0695 protein, partial cds Length = 4490 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2203 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2144 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2143 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2084 Query: 407 g 407 | Sbjct: 2083 g 2083
>ref|XM_420335.1| PREDICTED: Gallus gallus similar to cullin 4B (LOC422364), mRNA Length = 3015 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Minus Query: 295 agtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatactgacgatct 354 |||||||| | | |||||||||||||||| || || ||||||| ||| || || || || Sbjct: 2870 agtgtttttcgcatcttcataattcgaacaatagcggcatcaatctggtattgccggtcc 2811 Query: 355 tgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatctgaatt 411 || ||||||||||| || ||||||| | ||| ||||| ||||| |||||||||||| Sbjct: 2810 tggaatactctctctgtagtgcttgcctgttcctctaccgtttctttcatctgaatt 2754
>ref|NM_001040124.1| Felis catus cullin 4BY (CUL4BY), mRNA Length = 2775 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||||||| |||||||||| ||||| || || ||||||| |||||| Sbjct: 2306 tgtggctaagtgttttcctcatcttcataatgcgaacaattgcagcatcaatctgatatc 2247 Query: 347 gacgatcttgaaatactctct 367 | |||||||| || ||||||| Sbjct: 2246 gtcgatcttggaaaactctct 2226
>gb|DQ329523.1| Felis catus chromosome Y CUL4BY mRNA, complete cds Length = 2775 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||||||| |||||||||| ||||| || || ||||||| |||||| Sbjct: 2306 tgtggctaagtgttttcctcatcttcataatgcgaacaattgcagcatcaatctgatatc 2247 Query: 347 gacgatcttgaaatactctct 367 | |||||||| || ||||||| Sbjct: 2246 gtcgatcttggaaaactctct 2226
>dbj|AB071052.1| Macaca fascicularis testis cDNA clone:QtsA-14268, similar to human cullin 4B(CUL4B), mRNA, NM_003588.2 Length = 3081 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||| | Sbjct: 2963 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatatt 2904 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2903 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2844 Query: 407 g 407 | Sbjct: 2843 g 2843
>gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence Length = 147102 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 103987 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 104046 Query: 347 gacgatcttgaaatactctctcagtggtgcttg 379 | | |||||||||||||| || || ||||||| Sbjct: 104047 gtctgtcttgaaatactctttctgtagtgcttg 104079
>emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chromosome X, complete sequence Length = 216238 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 150433 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 150492 Query: 347 gacgatcttgaaatactctctcagtggtgcttg 379 | | |||||||||||||| || || ||||||| Sbjct: 150493 gtctgtcttgaaatactctttctgtagtgcttg 150525
>ref|XM_549223.2| PREDICTED: Canis familiaris similar to Cullin-4B (CUL-4B), transcript variant 1 (LOC492102), mRNA Length = 3760 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2901 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2842 Query: 347 gacgatcttgaaatactct 365 | | |||||||||||||| Sbjct: 2841 gtctgtcttgaaatactct 2823
>ref|XM_859535.1| PREDICTED: Canis familiaris similar to Cullin-4B (CUL-4B), transcript variant 3 (LOC492102), mRNA Length = 3533 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2674 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2615 Query: 347 gacgatcttgaaatactct 365 | | |||||||||||||| Sbjct: 2614 gtctgtcttgaaatactct 2596
>ref|XM_846813.1| PREDICTED: Canis familiaris similar to Cullin-4B (CUL-4B), transcript variant 2 (LOC492102), mRNA Length = 3718 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2859 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2800 Query: 347 gacgatcttgaaatactct 365 | | |||||||||||||| Sbjct: 2799 gtctgtcttgaaatactct 2781
>ref|XM_416942.1| PREDICTED: Gallus gallus similar to cullin 4A (LOC418743), mRNA Length = 747 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 308 tcttcataattcgaactatggccgcatcaacctgatactgacgatcttgaaatactctct 367 ||||||| ||||| || ||||| ||||||| ||||||||| | |||||||||||||| | Sbjct: 583 tcttcattattcgtacaatggcagcatcaatctgatactgtctgtcttgaaatactcttt 524 Query: 368 cagtggtgct 377 |||| ||||| Sbjct: 523 cagttgtgct 514
>gb|AC163704.4| Gallus gallus BAC clone CH261-114A20 from chromosome ul, complete sequence Length = 198816 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 308 tcttcataattcgaactatggccgcatcaacctgatactgacgatcttgaaatactctct 367 ||||||| ||||| || ||||| ||||||| ||||||||| | |||||||||||||| | Sbjct: 27983 tcttcattattcgtacaatggcagcatcaatctgatactgtctgtcttgaaatactcttt 28042 Query: 368 cagtggtgct 377 |||| ||||| Sbjct: 28043 cagttgtgct 28052
>gb|BC054607.1| Danio rerio cullin 4A, mRNA (cDNA clone MGC:64071 IMAGE:6794393), complete cds Length = 3208 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 |||||||||||||||||||| ||||||| || || || | ||||| || | |||||||| Sbjct: 2333 tgtggctgagtgttttcctcatcttcatgatgcgcacaaccgccgcgtcgatctgatact 2274 Query: 347 gacgatcttgaaatactctctcagtggtgct 377 |||| || ||||| || | ||| |||||||| Sbjct: 2273 gacggtcctgaaacacacgctcggtggtgct 2243
>ref|NM_201027.1| Danio rerio cullin 4A (cul4a), mRNA Length = 3208 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 |||||||||||||||||||| ||||||| || || || | ||||| || | |||||||| Sbjct: 2333 tgtggctgagtgttttcctcatcttcatgatgcgcacaaccgccgcgtcgatctgatact 2274 Query: 347 gacgatcttgaaatactctctcagtggtgct 377 |||| || ||||| || | ||| |||||||| Sbjct: 2273 gacggtcctgaaacacacgctcggtggtgct 2243
>gb|BC100244.1| Xenopus laevis cDNA clone MGC:115611 IMAGE:3746340, complete cds Length = 3857 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 301 ttcctcgtcttcataattcgaactatggccgcatcaacctgatactgacgatcttgaaat 360 |||||| |||||||||| ||||| || || ||||||| || ||||| | || ||||| Sbjct: 2467 ttcctcatcttcataatccgaacaattgctgcatcaatttggtactgtctgtcctgaaaa 2408 Query: 361 actctctcagtggtgcttgtgttttcttctactgtttccttcatctgaat 410 ||||| || || ||||||| | |||||| || ||||||||||||||||| Sbjct: 2407 actctttctgtagtgcttgcttgttcttccaccgtttccttcatctgaat 2358
>ref|XM_509759.1| PREDICTED: Pan troglodytes similar to cullin 4A (LOC452694), mRNA Length = 1514 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1379 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1320 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 1319 acagtttccttcatctgaatt 1299
>ref|NM_001008895.1| Homo sapiens cullin 4A (CUL4A), transcript variant 1, mRNA Length = 3797 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 2104 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 2045 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 2044 acagtttccttcatctgaatt 2024
>ref|NM_003589.2| Homo sapiens cullin 4A (CUL4A), transcript variant 2, mRNA Length = 3735 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 2042 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1983 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 1982 acagtttccttcatctgaatt 1962
>gb|AY365124.1| Homo sapiens cullin 4A (CUL4A) mRNA, complete cds Length = 2280 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 2093 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 2034 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 2033 acagtttccttcatctgaatt 2013
>gb|BT007619.1| Synthetic construct Homo sapiens cullin 4A mRNA, partial cds Length = 1980 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1793 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1734 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 1733 acagtttccttcatctgaatt 1713
>emb|CR603374.1| full-length cDNA clone CS0DM013YL09 of Fetal liver of Homo sapiens (human) Length = 2266 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 830 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 771 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 770 acagtttccttcatctgaatt 750
>gb|AY051648.1| Drosophila melanogaster GM14815 full length cDNA Length = 3314 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Minus Query: 310 ttcataattcgaactatggccgcatcaacctgatactgacgatcttgaaatac 362 |||||||| || || || |||||||||| |||||||||||||| |||||||| Sbjct: 2640 ttcataatgcgcacaatagccgcatcaatttgatactgacgatcctgaaatac 2588
>dbj|AB178950.1| Homo sapiens CUL4A mRNA for cullin-4A, complete cds Length = 2280 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 2093 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 2034 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 2033 acagtttccttcatctgaatt 2013
>gb|AY892461.1| Synthetic construct Homo sapiens clone FLH024180.01L cullin 4A (CUL4A) mRNA, partial cds Length = 1980 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1793 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1734 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 1733 acagtttccttcatctgaatt 1713
>gb|BC008308.1| Homo sapiens cullin 4A, transcript variant 1, mRNA (cDNA clone MGC:15238 IMAGE:3537176), complete cds Length = 3269 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 2104 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 2045 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 2044 acagtttccttcatctgaatt 2024
>gb|AF077188.1|AF077188 Homo sapiens cullin 4A (CUL4A) mRNA, complete cds Length = 3643 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1953 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1894 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 1893 acagtttccttcatctgaatt 1873
>emb|AL833355.1|HSM804668 Homo sapiens mRNA; cDNA DKFZp686N0735 (from clone DKFZp686N0735) Length = 3645 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1980 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1921 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 1920 acagtttccttcatctgaatt 1900
>dbj|AB012193.1| Homo sapiens mRNA for cullin-4A, partial cds Length = 1577 Score = 50.1 bits (25), Expect = 0.006 Identities = 67/81 (82%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 390 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1390 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1331 Query: 391 actgtttccttcatctgaatt 411 || |||||||||||||||||| Sbjct: 1330 acagtttccttcatctgaatt 1310
>dbj|AB025620.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDE13 Length = 14139 Score = 48.1 bits (24), Expect = 0.026 Identities = 93/116 (80%) Strand = Plus / Plus Query: 146 aagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtcga 205 |||| ||||||||||||||||| ||||| || || ||||||| || || | |||| Sbjct: 4737 aagcaagataattgtatatctgagggttgcttttttccctctccaaatattctcgatcga 4796 Query: 206 tcaggctctctattctcttcttcatatccgctggcttaatcgggaacttcagctgc 261 ||| |||||| || |||||||||| ||| || ||||| |||||||| || |||||| Sbjct: 4797 tcaagctctcaatcctcttcttcagatcagcaggctttatcgggaatttgagctgc 4852
>gb|AY389766.1| Hyacinthus orientalis cullin mRNA, partial cds Length = 812 Score = 46.1 bits (23), Expect = 0.10 Identities = 104/131 (79%) Strand = Plus / Minus Query: 325 atggccgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttt 384 ||||| ||||| |||||| |||| |||||||| || || | || || | |||||||||| Sbjct: 802 atggctgcatcgacctgagactgccgatcttggaaaaccgtttctgttgggcttgtgttt 743 Query: 385 tcttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagcacta 444 || || ||||| || ||||| |||||||| || || || ||||| || || || ||||| Sbjct: 742 tcctcgactgtctcgttcatgtgaattgcgtttacgttgatgcggtagagaggtgcactg 683 Query: 445 aaatcttcatt 455 || |||||||| Sbjct: 682 aactcttcatt 672
>emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on chromosome 13 Contains the CUL4A gene for cullin 4A, the LAMP1 gene for lysosomal-associated membrane protein 1, the GRTP1 gene for growth hormone regulated TBC protein 1, a novel gene, the 5' end of a novel gene (FLJ11305) an LDHB (lactate dehydrogenase B) pseudogene and six CpG islands, complete sequence Length = 188896 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgct 377 ||||||| |||||| || | ||| ||||| ||||||||||||||||| Sbjct: 52478 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgct 52432
>gb|AC163765.3| Pan troglodytes BAC clone CH251-175G24 from chromosome unknown, complete sequence Length = 196942 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgct 377 ||||||| |||||| || | ||| ||||| ||||||||||||||||| Sbjct: 59678 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgct 59724
>gb|U58090.1|HSU58090 Human Hs-cul-4A mRNA, partial cds Length = 1630 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 331 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgct 377 ||||||| |||||| || | ||| ||||| ||||||||||||||||| Sbjct: 1080 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgct 1034
>emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chromosome X, complete sequence Length = 230674 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 384 ttcttctactgtttccttcatctgaat 410 ||||| ||||||||||||||||||||| Sbjct: 224353 ttcttttactgtttccttcatctgaat 224327
>gb|AC093104.2| Drosophila melanogaster clone BACR38O04, complete sequence Length = 167107 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Plus Query: 310 ttcataattcgaactatggccgcatcaacctgatactgacgatcttgaaa 359 |||||||| || || || |||||||||| |||||||||||||| ||||| Sbjct: 125899 ttcataatgcgcacaatagccgcatcaatttgatactgacgatcctgaaa 125948
>ref|NM_136508.2| Drosophila melanogaster cul-4 CG8711-RA (cul-4), mRNA Length = 3339 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Minus Query: 310 ttcataattcgaactatggccgcatcaacctgatactgacgatcttgaaa 359 |||||||| || || || |||||||||| |||||||||||||| ||||| Sbjct: 2683 ttcataatgcgcacaatagccgcatcaatttgatactgacgatcctgaaa 2634
>gb|AC097380.2| Homo sapiens BAC clone RP11-336M17 from 4, complete sequence Length = 71641 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 100 taaaataaaattaacatgacat 121 |||||||||||||||||||||| Sbjct: 44889 taaaataaaattaacatgacat 44910
>gb|AC091138.6| Homo sapiens chromosome 18, clone RP11-676J15, complete sequence Length = 207520 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 cagagagagaacaaaggaacag 64 |||||||||||||||||||||| Sbjct: 118759 cagagagagaacaaaggaacag 118738
>gb|BT021374.1| Drosophila melanogaster LP02965 full insert cDNA Length = 3381 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Minus Query: 310 ttcataattcgaactatggccgcatcaacctgatactgacgatcttgaaa 359 |||||||| || || || |||||||||| |||||||||||||| ||||| Sbjct: 2646 ttcataatgcgcacaatagccgcatcaatttgatactgacgatcctgaaa 2597
>gb|AE003838.3| Drosophila melanogaster chromosome 2R, section 12 of 73 of the complete sequence Length = 226833 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Plus Query: 310 ttcataattcgaactatggccgcatcaacctgatactgacgatcttgaaa 359 |||||||| || || || |||||||||| |||||||||||||| ||||| Sbjct: 60474 ttcataatgcgcacaatagccgcatcaatttgatactgacgatcctgaaa 60523
>gb|AC005473.1|AC005473 Drosophila melanogaster, chromosome 2R, region 44A3-44A4, P1 clone DS02142, complete sequence Length = 76743 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Minus Query: 310 ttcataattcgaactatggccgcatcaacctgatactgacgatcttgaaa 359 |||||||| || || || |||||||||| |||||||||||||| ||||| Sbjct: 8450 ttcataatgcgcacaatagccgcatcaatttgatactgacgatcctgaaa 8401
>gb|AC144926.6| Mus musculus chromosome 8, clone RP23-8E24, complete sequence Length = 214694 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 89 gtttctgacaataaaataaaattaa 113 ||||||||| ||||||||||||||| Sbjct: 131015 gtttctgactataaaataaaattaa 130991
>gb|AC114667.12| Mus musculus chromosome 1, clone RP24-175L10, complete sequence Length = 171306 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 cagagagagaacaaaggaacagcaa 67 |||||||||||||||| |||||||| Sbjct: 145447 cagagagagaacaaagtaacagcaa 145471
>emb|CR391935.9| Zebrafish DNA sequence from clone DKEY-256K13 in linkage group 23, complete sequence Length = 197191 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 tctcagtggtgcttgtgtttt 385 ||||||||||||||||||||| Sbjct: 7005 tctcagtggtgcttgtgtttt 7025
>gb|AC163440.3| Mus musculus chromosome 1, clone RP23-445K8, complete sequence Length = 194714 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 cagagagagaacaaaggaacagcaa 67 |||||||||||||||| |||||||| Sbjct: 141250 cagagagagaacaaagtaacagcaa 141226
>emb|AL590987.8| Human DNA sequence from clone RP11-427G13 on chromosome 1, complete sequence Length = 81490 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 tgacaataaaataaaattaac 114 ||||||||||||||||||||| Sbjct: 66021 tgacaataaaataaaattaac 66001
>emb|AL392104.19| Human DNA sequence from clone RP11-324E23 on chromosome 10 Contains the 3' end of a novel gene (DKFZp761L0424) (KIAA1217), the 3' end of the gene for Rho-GTPase activating protein 10 (ARHGAP10) and a CpG island, complete sequence Length = 166643 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 tcgggaacttcagctgctgga 265 ||||||||||||||||||||| Sbjct: 9850 tcgggaacttcagctgctgga 9870
>gb|DQ329524.1| Felis catus chromosome X CUL4BX mRNA, complete cds Length = 2741 Score = 42.1 bits (21), Expect = 1.6 Identities = 96/121 (79%) Strand = Plus / Minus Query: 287 tgtggctgagtgttttcctcgtcttcataattcgaactatggccgcatcaacctgatact 346 ||||||| || || || ||| ||||||| |||||||| || || ||||||| || |||| Sbjct: 2512 tgtggctaagcgtctttctcatcttcatgattcgaacaattgcagcatcaatttggtact 2453 Query: 347 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 406 | | || ||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2452 gtctgtcctgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2393 Query: 407 g 407 | Sbjct: 2392 g 2392
>emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in linkage group 11 Contains a novel gene similar to human and rodent RRAD (Ras-related protein associated with diabetes), a novel gene, a novel gene similar to mouse PNP (purine-nucleoside phosphorylase), a novel gene similar to human and rodent SOX11 (SRY (sex determining region Y)-box 11) and a CpG island, complete sequence Length = 204498 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 acaataaaataaaattaacat 116 ||||||||||||||||||||| Sbjct: 138790 acaataaaataaaattaacat 138770
>emb|AL591391.5| Zebrafish DNA sequence from clone BUSM1-186F8 in linkage group 7 Contains the nitr1a_3 gene for novel immune-type receptor 1a, allele 3, the nitr1c_3 gene for novel immune-type receptor 1c, allele 3, the nitr2e_1 gene for novel immune-type receptor 2e, allele 1, the nitr1b_2 gene for novel immune-ype receptor 1b, allele 2, the nitr2a_3 gene for novel immune-type receptor 2a, allele 3, the nitr2b_1 gene for novel immune-type receptor 2b, allele 1, the nitr1f_1 gene for novel immune-type receptor 1f, allele 1, a novel immune-type receptor 2c pseudogene, the nitr3d_3 gene for novel immune-type receptor 3d, allele 3, the nitr1h_1 gene for novel immune-type receptor 1h, allele 1, the nitr1d_5 gene for novel immune-type receptor 1d, allele 5 and two novel immune-type receptor 1 pseudogenes, complete sequence Length = 97640 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 acaataaaataaaattaacatgaca 120 |||||||||||||||||| |||||| Sbjct: 34952 acaataaaataaaattaatatgaca 34976
>gb|AC103853.2| Homo sapiens chromosome 8, clone RP11-642D21, complete sequence Length = 178736 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 gtgttttcttctactgtttccttca 403 |||||||||||||| |||||||||| Sbjct: 2821 gtgttttcttctacggtttccttca 2845
>emb|BX469903.9| Zebrafish DNA sequence from clone CH211-46H12 in linkage group 23, complete sequence Length = 175747 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 tctcagtggtgcttgtgtttt 385 ||||||||||||||||||||| Sbjct: 37620 tctcagtggtgcttgtgtttt 37640
>gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, complete sequence Length = 171621 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 84 agtgtgtttctgacaataaaataaaatta 112 ||||||||| ||| ||||||||||||||| Sbjct: 5776 agtgtgtttttgaaaataaaataaaatta 5804
>gb|AC090802.6| Homo sapiens chromosome 8, clone RP11-152P17, complete sequence Length = 162549 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 379 gtgttttcttctactgtttccttca 403 |||||||||||||| |||||||||| Sbjct: 18690 gtgttttcttctacggtttccttca 18666
>gb|AC011743.9| Homo sapiens BAC clone RP11-299O14 from 2, complete sequence Length = 114495 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 84 agtgtgtttctgacaataaaataaaatta 112 ||||||||| ||| ||||||||||||||| Sbjct: 40104 agtgtgtttttgaaaataaaataaaatta 40132
>gb|AC146367.3| Dasypus novemcinctus clone VMRC5-80B17, complete sequence Length = 124849 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 ctgacaataaaataaaattaacat 116 ||||||||||| |||||||||||| Sbjct: 97611 ctgacaataaattaaaattaacat 97634
>gb|AC158412.4| Cercopithecus aethiops clone CH252-436N4, complete sequence Length = 213834 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 150643 ataaaataaaattaacatga 150662
>gb|AF064190.1| Homo sapiens beta-globin locus control region, 5' sequence Length = 8137 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gccagataattgtatatctg 167 |||||||||||||||||||| Sbjct: 778 gccagataattgtatatctg 759
>gb|AC164079.11| Mus musculus chromosome 1, clone RP23-15E12, complete sequence Length = 215135 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 tgcttgtgttttcttctact 393 |||||||||||||||||||| Sbjct: 29154 tgcttgtgttttcttctact 29135
>gb|AC162176.2| Mus musculus BAC clone RP24-446P15 from chromosome 9, complete sequence Length = 204098 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 aagctcagttattagaaggg 286 |||||||||||||||||||| Sbjct: 19088 aagctcagttattagaaggg 19107
>gb|AC166051.5| Mus musculus BAC clone RP24-166B2 from chromosome 9, complete sequence Length = 152610 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 aagctcagttattagaaggg 286 |||||||||||||||||||| Sbjct: 52650 aagctcagttattagaaggg 52669
>gb|AC159409.1| Trypanosoma brucei chromosome 7 clone RPCI93-15M23, complete sequence Length = 157301 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 aacagcaatacgcaattact 79 |||||||||||||||||||| Sbjct: 123792 aacagcaatacgcaattact 123811
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 aacagcaatacgcaattact 79 |||||||||||||||||||| Sbjct: 1881807 aacagcaatacgcaattact 1881826
>gb|AC111064.11| Mus musculus chromosome 1, clone RP23-245H20, complete sequence Length = 150336 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ttttcttctactgtttcctt 401 |||||||||||||||||||| Sbjct: 3393 ttttcttctactgtttcctt 3374
>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence Length = 153145 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 36823 ttctgacaataaaataaaat 36842
>gb|AE006383.1| Lactococcus lactis subsp. lactis IL1403 section 145 of 218 of the complete genome Length = 11001 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ttttcttctactgtttcctt 401 |||||||||||||||||||| Sbjct: 2890 ttttcttctactgtttcctt 2909
>gb|AC111125.11| Mus musculus chromosome 9, clone RP23-331P8, complete sequence Length = 260036 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 aaaataaaattaacatgaca 120 |||||||||||||||||||| Sbjct: 251209 aaaataaaattaacatgaca 251190
>gb|AC123800.4| Mus musculus BAC clone RP24-343K18 from chromosome 1, complete sequence Length = 177367 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ttttcttctactgtttcctt 401 |||||||||||||||||||| Sbjct: 52170 ttttcttctactgtttcctt 52189
>emb|BX957359.10| Zebrafish DNA sequence from clone DKEY-234E8 in linkage group 7, complete sequence Length = 180396 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 122382 ttctgacaataaaataaaat 122363
>emb|AL954205.1| Pan troglodytes chromosome 22 clone RP43-046M07 map q21.1, complete sequence Length = 174216 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 82218 ttctgacaataaaataaaat 82199
>gb|AC126675.4| Mus musculus BAC clone RP23-430P11 from chromosome 19, complete sequence Length = 183462 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acaataaaataaaattaaca 115 |||||||||||||||||||| Sbjct: 55951 acaataaaataaaattaaca 55932
>gb|AC087432.3| Homo sapiens chromosome 3 clone RP11-96G4 map 3p, complete sequence Length = 152430 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 acttcagctgctggaaaagc 270 |||||||||||||||||||| Sbjct: 46271 acttcagctgctggaaaagc 46290
>gb|AC121933.3| Mus musculus BAC clone RP24-206I11 from chromosome 8, complete sequence Length = 182816 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acaataaaataaaattaaca 115 |||||||||||||||||||| Sbjct: 11391 acaataaaataaaattaaca 11372
>gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, complete sequence Length = 191988 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aataaaataaaattaacatg 117 |||||||||||||||||||| Sbjct: 121848 aataaaataaaattaacatg 121867
>ref|XM_725710.1| Plasmodium yoelii yoelii str. 17XNL Glu-tRNAGln amidotransferase subunit A (PY02858) partial mRNA Length = 1971 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aataaaataaaattaacatg 117 |||||||||||||||||||| Sbjct: 1547 aataaaataaaattaacatg 1528
>emb|CR687221.2|CNS0FT7L Tetraodon nigroviridis full-length cDNA Length = 534 Score = 40.1 bits (20), Expect = 6.2 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 87 gtgtttctgacaataaaataaaattaac 114 |||||||||||||||||| ||||||||| Sbjct: 501 gtgtttctgacaataaaa-aaaattaac 527
>gb|AC074021.7| Homo sapiens BAC clone RP11-354H2 from 7, complete sequence Length = 26765 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 7514 ataaaataaaattaacatga 7533
>emb|CR683370.2|CNS0FQ8M Tetraodon nigroviridis full-length cDNA Length = 534 Score = 40.1 bits (20), Expect = 6.2 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 87 gtgtttctgacaataaaataaaattaac 114 |||||||||||||||||| ||||||||| Sbjct: 501 gtgtttctgacaataaaa-aaaattaac 527
>ref|XM_674645.1| Plasmodium berghei strain ANKA glutamyl-tRNA(Gln) amidotransferase subunit A (PB001181.02.0) partial mRNA Length = 1695 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aataaaataaaattaacatg 117 |||||||||||||||||||| Sbjct: 1274 aataaaataaaattaacatg 1255
>gb|AF038608.1| Caenorhabditis elegans cosmid C09G12, complete sequence Length = 41519 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 gaaaagctcagttattagaagggt 287 ||||||||||||||| |||||||| Sbjct: 17134 gaaaagctcagttataagaagggt 17111
>gb|AC145866.3| Pan troglodytes BAC clone RP43-21B7 from 7, complete sequence Length = 189814 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gtgtgtttctgacaataaaa 104 |||||||||||||||||||| Sbjct: 106754 gtgtgtttctgacaataaaa 106735
>gb|AC147430.9| Medicago truncatula clone mth2-71e6, complete sequence Length = 125478 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aataaaataaaattaacatg 117 |||||||||||||||||||| Sbjct: 62360 aataaaataaaattaacatg 62379
>ref|NG_000007.3| Homo sapiens beta globin region (HBB@) on chromosome 11 Length = 81706 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gccagataattgtatatctg 167 |||||||||||||||||||| Sbjct: 779 gccagataattgtatatctg 760
>emb|AL356259.11| Human DNA sequence from clone RP11-385E5 on chromosome 13 Contains a mitochondrial ribosomal protein L3 (MRPL3) (MRL3 RPML3) pseudogene, a ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 (ADPRTL1) (PH5P p193 PARPL VPARP VAULT3 KIAA0177) pseudogene, a cyclin K (CCNK) pseudogene, a pseudogene similar to ornithine transporter 2 (ORNT2), a KIAA1074 protein pseudogene, three novel genes and three CpG islands, complete sequence Length = 141876 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 aataaaataaaattaacatgacat 121 ||||||||||||| |||||||||| Sbjct: 34526 aataaaataaaataaacatgacat 34549
>emb|AL159975.12| Human DNA sequence from clone RP11-321F21 on chromosome 13, complete sequence Length = 81301 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 caactcccagagagagaaca 55 |||||||||||||||||||| Sbjct: 56908 caactcccagagagagaaca 56927
>emb|AL133211.9| Human DNA sequence from clone RP3-486L4 on chromosome 6q14.3-16.1 Contains the 3' end of the ORC3L gene for origin recognition complex, subunit 3-like (yeast), a novel gene and parts of 2 novel genes, complete sequence Length = 82486 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ataaaggggagcactaaaat 448 |||||||||||||||||||| Sbjct: 23004 ataaaggggagcactaaaat 23023
>gb|AC171744.3| Nomascus leucogenys leucogenys clone CH271-119I21, complete sequence Length = 130987 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 130919 ataaaataaaattaacatga 130938
>emb|AL954206.1| Pan troglodytes chromosome 22 clone PTB-052N04 map q21.1, complete sequence Length = 153753 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 32281 ttctgacaataaaataaaat 32262
>emb|AL954204.1| Pan troglodytes chromosome 22 clone PTB-051G08 map q21.1, complete sequence Length = 146898 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 115273 ttctgacaataaaataaaat 115254
>emb|AL954203.1| Pan troglodytes chromosome 22 clone RP43-019O24 map q21.1, complete sequence Length = 206110 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 181779 ttctgacaataaaataaaat 181760
>gb|AC004844.1| Homo sapiens PAC clone RP4-613I23 from 7p11-p13, complete sequence Length = 141895 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gtgtgtttctgacaataaaa 104 |||||||||||||||||||| Sbjct: 80294 gtgtgtttctgacaataaaa 80275
>gb|AC091601.6| Homo sapiens BAC clone RP11-653G16 from 4, complete sequence Length = 87563 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aataaaataaaattaacatg 117 |||||||||||||||||||| Sbjct: 3409 aataaaataaaattaacatg 3428
>emb|BX510995.11| Zebrafish DNA sequence from clone CH211-57P8 in linkage group 14, complete sequence Length = 169766 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 tgctggaaaagctcagttat 278 |||||||||||||||||||| Sbjct: 133872 tgctggaaaagctcagttat 133853
>gb|AC096537.3| Homo sapiens chromosome 1 clone RP11-100E13, complete sequence Length = 163746 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaataaaataaaattaaca 115 |||||||||||||||||||| Sbjct: 19847 acaataaaataaaattaaca 19866
>gb|AC026393.11| Homo sapiens chromosome 10 clone RP11-308N23, complete sequence Length = 84208 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aataaaataaaattaacatg 117 |||||||||||||||||||| Sbjct: 47362 aataaaataaaattaacatg 47381
>gb|AC024248.7| Homo sapiens BAC clone RP11-659O3 from 4, complete sequence Length = 202340 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 ctcccagagagagaacaaag 58 |||||||||||||||||||| Sbjct: 121301 ctcccagagagagaacaaag 121320
>gb|AC074101.5| Homo sapiens BAC clone RP11-646I19 from 2, complete sequence Length = 153723 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aataaaataaaattaacatg 117 |||||||||||||||||||| Sbjct: 15845 aataaaataaaattaacatg 15864
>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold Length = 1678549 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 128630 ataaaataaaattaacatga 128649
>gb|AC166003.3| Nomascus leucogenys leucogenys clone CH271-85O19, complete sequence Length = 164417 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 2744 ataaaataaaattaacatga 2763
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gaaaagctcagttattagaa 283 |||||||||||||||||||| Sbjct: 14256644 gaaaagctcagttattagaa 14256663
>emb|BX827601.1|CNS0A2U0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS81ZH02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1323 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 agagagagaacaaaggaaca 63 |||||||||||||||||||| Sbjct: 68 agagagagaacaaaggaaca 87
>gb|AC074087.4| Homo sapiens BAC clone RP11-26C10 from 4, complete sequence Length = 156083 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tgacaataaaataaaattaa 113 |||||||||||||||||||| Sbjct: 65625 tgacaataaaataaaattaa 65606
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 109968 ataaaataaaattaacatga 109987
>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold Length = 1825024 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 150643 ataaaataaaattaacatga 150662
>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold Length = 1819346 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 85807 ataaaataaaattaacatga 85826
>gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome 9, complete sequence Length = 216124 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 aaaataaaattaacatgaca 120 |||||||||||||||||||| Sbjct: 78465 aaaataaaattaacatgaca 78446
>gb|AC155811.2| Mus musculus BAC clone RP24-185C13 from chromosome 12, complete sequence Length = 152790 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 agcactaaaatcttcattaa 457 |||||||||||||||||||| Sbjct: 126044 agcactaaaatcttcattaa 126025
>dbj|AP000034.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 5/28, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 62181 ttctgacaataaaataaaat 62200
>gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta13, HOR5'Beta12, and HOR5'Beta11 genes, complete cds; HOR 5'Beta10 and HOR5'Beta9 pseudogenes, complete sequence; HOR5'Beta8 and HOR5'Beta7 genes, complete cds; CHR11ORF1 and amphiphysin pseudogenes, complete sequence; HOR5'Beta6 and HOR5'Beta5 genes, complete cds; HOR5'Beta4 pseudogene, complete sequence; HOR 5'Beta3 genes, complete cds; HOR5'Beta2 pseudogene, complete sequence; and HOR 5'Beta1 gene, complete cds Length = 219955 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gccagataattgtatatctg 167 |||||||||||||||||||| Sbjct: 215896 gccagataattgtatatctg 215877
>gb|AC009492.4| Homo sapiens BAC clone RP11-423F9 from 2, complete sequence Length = 212549 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 195224 ataaaataaaattaacatga 195243
>gb|AF260225.1|AF260225 Homo sapiens TESTIN 2 and TESTIN 3 genes, complete cds, alternatively spliced Length = 162354 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 123207 ataaaataaaattaacatga 123226
>gb|AC104389.8| Homo sapiens chromosome 11, clone CTD-2643I7, complete sequence Length = 207343 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 gccagataattgtatatctg 167 |||||||||||||||||||| Sbjct: 99177 gccagataattgtatatctg 99196
>gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, complete sequence Length = 213942 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaataaaataaaattaaca 115 |||||||||||||||||||| Sbjct: 184420 acaataaaataaaattaaca 184439
>dbj|AP005493.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0078D03 Length = 176593 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gaaaagctcagttattagaa 283 |||||||||||||||||||| Sbjct: 160933 gaaaagctcagttattagaa 160952
>emb|BX005082.7| Zebrafish DNA sequence from clone DKEY-148A17 in linkage group 7, complete sequence Length = 151799 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 88964 ttctgacaataaaataaaat 88945
>dbj|AP004637.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0703C03 Length = 162620 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gaaaagctcagttattagaa 283 |||||||||||||||||||| Sbjct: 72200 gaaaagctcagttattagaa 72219
>gb|AC113990.10| Mus musculus chromosome 3, clone RP24-137C19, complete sequence Length = 181758 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 aattactttacagtgtgtttctga 96 |||||||||||||||||| ||||| Sbjct: 109968 aattactttacagtgtgtatctga 109945
>gb|AC156761.3| Dasypus novemcinctus clone VMRC5-289J4, complete sequence Length = 75791 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 ctgacaataaaataaaattaacat 116 ||||||||||| |||||||||||| Sbjct: 17015 ctgacaataaattaaaattaacat 17038
>gb|AC151364.3| Macaca mulatta clone CH250-142M15, complete sequence Length = 148725 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 128630 ataaaataaaattaacatga 128649
>gb|AC138731.4| Pongo pygmaeus clone CH253-404N12, complete sequence Length = 163314 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ataaaataaaattaacatga 118 |||||||||||||||||||| Sbjct: 85807 ataaaataaaattaacatga 85826
>emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, complete sequence Length = 322774 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 gcttgtgttttcttctactgtttc 398 |||| ||||||||||||||||||| Sbjct: 315632 gcttatgttttcttctactgtttc 315609
>emb|BX324141.5| Zebrafish DNA sequence from clone CH211-87I20 in linkage group 20, complete sequence Length = 109948 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 tacagtgtgtttctgacaataaaa 104 |||||||||||| ||||||||||| Sbjct: 94314 tacagtgtgtttatgacaataaaa 94337
>emb|CR931726.9| Zebrafish DNA sequence from clone DKEYP-38E8 in linkage group 11, complete sequence Length = 131097 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 tgtttctgacaataaaataaaatt 111 ||||||||| |||||||||||||| Sbjct: 58548 tgtttctgaaaataaaataaaatt 58525
>gb|AF149711.1|AF149711 Pongo pygmaeus sequence in the 5' boundary area of the beta-globin locus control region Length = 332 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 gccagataattgtatatctg 167 |||||||||||||||||||| Sbjct: 112 gccagataattgtatatctg 131
>dbj|AP001713.1| Homo sapiens genomic DNA, chromosome 21q, section 57/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 211879 ttctgacaataaaataaaat 211860
>gb|AC122504.4| Mus musculus BAC clone RP24-419J13 from 9, complete sequence Length = 178896 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 aagctcagttattagaaggg 286 |||||||||||||||||||| Sbjct: 57441 aagctcagttattagaaggg 57422
>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence Length = 217949 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 agcactaaaatcttcattaa 457 |||||||||||||||||||| Sbjct: 170884 agcactaaaatcttcattaa 170903
>gb|AC140326.3| Mus musculus BAC clone RP23-413D14 from 8, complete sequence Length = 224003 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acaataaaataaaattaaca 115 |||||||||||||||||||| Sbjct: 214764 acaataaaataaaattaaca 214745
>gb|AC150901.2| Mus musculus BAC clone RP23-62N8 from 19, complete sequence Length = 220883 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaataaaataaaattaaca 115 |||||||||||||||||||| Sbjct: 108716 acaataaaataaaattaaca 108735
>emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on chromosome 11, complete sequence Length = 194872 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 agaagggtgtggctgagtgt 299 |||||||||||||||||||| Sbjct: 103335 agaagggtgtggctgagtgt 103354
>gb|AC101932.9| Mus musculus chromosome 7, clone RP24-66E13, complete sequence Length = 214419 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 ctgacaataaaataaaattaacat 116 |||||||||||| ||||||||||| Sbjct: 62189 ctgacaataaaaaaaaattaacat 62166
>gb|AC018814.6| Homo sapiens chromosome 3 clone RP11-204C23 map 3p, complete sequence Length = 166162 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 acttcagctgctggaaaagc 270 |||||||||||||||||||| Sbjct: 149005 acttcagctgctggaaaagc 149024
>dbj|AP000265.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:S187, complete sequence Length = 38304 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 22959 ttctgacaataaaataaaat 22940
>dbj|AP000177.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone Q78C10-f32E9, segment 4/21, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 74718 ttctgacaataaaataaaat 74699
>dbj|AP000101.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, Q78C10-149C3 region, segment 4/20 Length = 100000 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttctgacaataaaataaaat 110 |||||||||||||||||||| Sbjct: 74718 ttctgacaataaaataaaat 74699 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,953,948 Number of Sequences: 3902068 Number of extensions: 5953948 Number of successful extensions: 147032 Number of sequences better than 10.0: 178 Number of HSP's better than 10.0 without gapping: 176 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 146439 Number of HSP's gapped (non-prelim): 590 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
