Clone Name | rbah63g05 |
---|---|
Clone Library Name | barley_pub |
>HNF4A_HUMAN (P41235) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)| (Transcription factor HNF-4) (Transcription factor 14) Length = 465 Score = 32.3 bits (72), Expect = 1.2 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 9/68 (13%) Frame = -2 Query: 498 HYMMQH------VSNNMPEQLPNGML---PRQQGGAGSLGVGYDQQATPRYSQPSTPPSY 346 H M +H V+N MP L NG + PR +G Q ATP QPS P Sbjct: 383 HLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRG----------QAATPETPQPSPP--- 429 Query: 345 GAVGGNPF 322 G G P+ Sbjct: 430 GGSGSEPY 437
>HNF4A_RAT (P22449) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)| (Transcription factor HNF-4) (Transcription factor 14) Length = 465 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 9/62 (14%) Frame = -2 Query: 498 HYMMQH------VSNNMPEQLPNGML---PRQQGGAGSLGVGYDQQATPRYSQPSTPPSY 346 H M +H V+N MP L NG + PR +G Q ATP QPS P Sbjct: 383 HLMQEHMGTNVIVANTMPSHLSNGQMCEWPRPRG----------QAATPETPQPSPPSGS 432 Query: 345 GA 340 G+ Sbjct: 433 GS 434
>HNF4A_MOUSE (P49698) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)| (Transcription factor HNF-4) (Transcription factor 14) Length = 465 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 9/62 (14%) Frame = -2 Query: 498 HYMMQH------VSNNMPEQLPNGML---PRQQGGAGSLGVGYDQQATPRYSQPSTPPSY 346 H M +H V+N MP L NG + PR +G Q ATP QPS P Sbjct: 383 HLMQEHMGTNVIVANTMPSHLSNGQMCEWPRPRG----------QAATPETPQPSPPSGS 432 Query: 345 GA 340 G+ Sbjct: 433 GS 434
>PYRG_PSESM (Q886M5) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 543 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +2 Query: 56 QIYKKIGARSTELLLLKLMPHVASTSQTKLHGATVTEHMTSNMKQIFLQ 202 Q+ ++GAR L+ L L+P++A+ +TK T+H ++ I LQ Sbjct: 158 QLRFEVGARRAMLMHLTLVPYIATAGETK---TKPTQHSVKELRSIGLQ 203
>PYRG_PSEAE (Q9HXZ4) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 542 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +2 Query: 56 QIYKKIGARSTELLLLKLMPHVASTSQTKLHGATVTEHMTSNMKQIFLQ 202 Q+ +IGA+ L+ L L+P++A+ +TK T+H ++ I LQ Sbjct: 158 QLRVEIGAKRAMLMHLTLVPYIATAGETK---TKPTQHSVKELRSIGLQ 203
>TRPM6_HUMAN (Q9BX84) Transient receptor potential cation channel subfamily M| member 6 (EC 2.7.11.1) (Channel kinase 2) (Melastatin-related TRP cation channel 6) Length = 2022 Score = 30.8 bits (68), Expect = 3.6 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 6/109 (5%) Frame = +2 Query: 29 EATHTEHQTQIYKKIGARSTELLLLKLMPHVASTSQT--KLHGATVTEHMTSNMKQIFLQ 202 + HT H I + LL L L + +HG M S K+IF Q Sbjct: 102 DGEHTHHAKYIRTSYDTKLDHLLHLMLKEWKMELPKLVISVHGGIQNFTMPSKFKEIFSQ 161 Query: 203 GFVHSG-LTGQWALHTSGLKIHKIP*TGNMVR---PHLISLFYPKGFPP 337 G V + TG W + T G+ G+ ++ H + + G PP Sbjct: 162 GLVKAAETTGAWII-TEGINTGVSKHVGDALKSHSSHSLRKIWTVGIPP 209
>PIN2_ORYSA (Q651V6) Probable auxin efflux carrier component 2 (OsPIN2)| Length = 630 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = -2 Query: 507 HQNHYMMQHVSNNMPEQLPNGMLPRQQGGAGSLGVGYDQQATPRYS--QPSTPPSYGA 340 +Q + + M Q+ + M Q GGAG G D+Q T +++ + + PPSY A Sbjct: 274 NQADFYAMFSGSKMASQMASPMA--QHGGAGGRAQGLDEQVTNKFASGKAADPPSYPA 329
>SSB1_CHLTE (Q8KB47) Single-stranded DNA-binding protein 1 (SSB 1)| (Helix-destabilizing protein 1) Length = 162 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -2 Query: 444 MLPRQQGGAGSLGVGYDQQATPRYSQPSTP-PSYGAVGGNP 325 ML + G G+ Y Q P YS+PS P PS G G +P Sbjct: 108 MLGAKDSGGGTSDASYSQNR-PSYSRPSRPEPSSGNYGASP 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,644,806 Number of Sequences: 219361 Number of extensions: 2113387 Number of successful extensions: 5530 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 5283 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5525 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)