>HNF4A_HUMAN (P41235) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)|
           (Transcription factor HNF-4) (Transcription factor 14)
          Length = 465

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
 Frame = -2

Query: 498 HYMMQH------VSNNMPEQLPNGML---PRQQGGAGSLGVGYDQQATPRYSQPSTPPSY 346
           H M +H      V+N MP  L NG +   PR +G          Q ATP   QPS P   
Sbjct: 383 HLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRG----------QAATPETPQPSPP--- 429

Query: 345 GAVGGNPF 322
           G  G  P+
Sbjct: 430 GGSGSEPY 437

>HNF4A_RAT (P22449) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)|
           (Transcription factor HNF-4) (Transcription factor 14)
          Length = 465

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
 Frame = -2

Query: 498 HYMMQH------VSNNMPEQLPNGML---PRQQGGAGSLGVGYDQQATPRYSQPSTPPSY 346
           H M +H      V+N MP  L NG +   PR +G          Q ATP   QPS P   
Sbjct: 383 HLMQEHMGTNVIVANTMPSHLSNGQMCEWPRPRG----------QAATPETPQPSPPSGS 432

Query: 345 GA 340
           G+
Sbjct: 433 GS 434

>HNF4A_MOUSE (P49698) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)|
           (Transcription factor HNF-4) (Transcription factor 14)
          Length = 465

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
 Frame = -2

Query: 498 HYMMQH------VSNNMPEQLPNGML---PRQQGGAGSLGVGYDQQATPRYSQPSTPPSY 346
           H M +H      V+N MP  L NG +   PR +G          Q ATP   QPS P   
Sbjct: 383 HLMQEHMGTNVIVANTMPSHLSNGQMCEWPRPRG----------QAATPETPQPSPPSGS 432

Query: 345 GA 340
           G+
Sbjct: 433 GS 434

>PYRG_PSESM (Q886M5) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 543

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 56  QIYKKIGARSTELLLLKLMPHVASTSQTKLHGATVTEHMTSNMKQIFLQ 202
           Q+  ++GAR   L+ L L+P++A+  +TK      T+H    ++ I LQ
Sbjct: 158 QLRFEVGARRAMLMHLTLVPYIATAGETK---TKPTQHSVKELRSIGLQ 203

>PYRG_PSEAE (Q9HXZ4) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 542

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 56  QIYKKIGARSTELLLLKLMPHVASTSQTKLHGATVTEHMTSNMKQIFLQ 202
           Q+  +IGA+   L+ L L+P++A+  +TK      T+H    ++ I LQ
Sbjct: 158 QLRVEIGAKRAMLMHLTLVPYIATAGETK---TKPTQHSVKELRSIGLQ 203

>TRPM6_HUMAN (Q9BX84) Transient receptor potential cation channel subfamily M|
           member 6 (EC 2.7.11.1) (Channel kinase 2)
           (Melastatin-related TRP cation channel 6)
          Length = 2022

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
 Frame = +2

Query: 29  EATHTEHQTQIYKKIGARSTELLLLKLMPHVASTSQT--KLHGATVTEHMTSNMKQIFLQ 202
           +  HT H   I      +   LL L L        +    +HG      M S  K+IF Q
Sbjct: 102 DGEHTHHAKYIRTSYDTKLDHLLHLMLKEWKMELPKLVISVHGGIQNFTMPSKFKEIFSQ 161

Query: 203 GFVHSG-LTGQWALHTSGLKIHKIP*TGNMVR---PHLISLFYPKGFPP 337
           G V +   TG W + T G+        G+ ++    H +   +  G PP
Sbjct: 162 GLVKAAETTGAWII-TEGINTGVSKHVGDALKSHSSHSLRKIWTVGIPP 209

>PIN2_ORYSA (Q651V6) Probable auxin efflux carrier component 2 (OsPIN2)|
          Length = 630

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 507 HQNHYMMQHVSNNMPEQLPNGMLPRQQGGAGSLGVGYDQQATPRYS--QPSTPPSYGA 340
           +Q  +      + M  Q+ + M   Q GGAG    G D+Q T +++  + + PPSY A
Sbjct: 274 NQADFYAMFSGSKMASQMASPMA--QHGGAGGRAQGLDEQVTNKFASGKAADPPSYPA 329

>SSB1_CHLTE (Q8KB47) Single-stranded DNA-binding protein 1 (SSB 1)|
           (Helix-destabilizing protein 1)
          Length = 162

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 444 MLPRQQGGAGSLGVGYDQQATPRYSQPSTP-PSYGAVGGNP 325
           ML  +  G G+    Y Q   P YS+PS P PS G  G +P
Sbjct: 108 MLGAKDSGGGTSDASYSQNR-PSYSRPSRPEPSSGNYGASP 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,644,806
Number of Sequences: 219361
Number of extensions: 2113387
Number of successful extensions: 5530
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5525
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)