Clone Name | rbah63g05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464580.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2963 Score = 143 bits (72), Expect = 8e-31 Identities = 209/254 (82%), Gaps = 3/254 (1%) Strand = Plus / Minus Query: 316 ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 375 |||||||||||||||||| || |||| ||||| |||||||||||||||||||||| ||| Sbjct: 2418 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 2359 Query: 376 cctaggggtagcttgttgatcatatccgacgccgagggaaccagcccctccttgttgcct 435 ||| || | ||||||||||||| | || | | ||||||||| |||||||||||| | Sbjct: 2358 cctgggagcagcttgttgatcaaagcccatgttgagggaacccaaacctccttgttgcat 2299 Query: 436 tggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgta 495 |||||||||| |||||||| |||||||| || |||||| ||| |||||||||||||| Sbjct: 2298 tggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgta 2242 Query: 496 atggttttgatgtacaggtggctgaatcatctgctgaggctgctgaggtggaactccaaa 555 ||| ||| || || |||||| ||| || ||||||||| ||||| || | |||||||| Sbjct: 2241 atgatttggaggtgcaggtgactggtacagctgctgaggttgctgtggaaggactccaaa 2182 Query: 556 actagagttaccaa 569 ||| ||| |||||| Sbjct: 2181 actcgaggtaccaa 2168
>dbj|AK121183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084M01, full insert sequence Length = 2961 Score = 143 bits (72), Expect = 8e-31 Identities = 209/254 (82%), Gaps = 3/254 (1%) Strand = Plus / Minus Query: 316 ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 375 |||||||||||||||||| || |||| ||||| |||||||||||||||||||||| ||| Sbjct: 2416 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 2357 Query: 376 cctaggggtagcttgttgatcatatccgacgccgagggaaccagcccctccttgttgcct 435 ||| || | ||||||||||||| | || | | ||||||||| |||||||||||| | Sbjct: 2356 cctgggagcagcttgttgatcaaagcccatgttgagggaacccaaacctccttgttgcat 2297 Query: 436 tggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgta 495 |||||||||| |||||||| |||||||| || |||||| ||| |||||||||||||| Sbjct: 2296 tggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgta 2240 Query: 496 atggttttgatgtacaggtggctgaatcatctgctgaggctgctgaggtggaactccaaa 555 ||| ||| || || |||||| ||| || ||||||||| ||||| || | |||||||| Sbjct: 2239 atgatttggaggtgcaggtgactggtacagctgctgaggttgctgtggaaggactccaaa 2180 Query: 556 actagagttaccaa 569 ||| ||| |||||| Sbjct: 2179 actcgaggtaccaa 2166
>emb|AJ575233.1|OSA575233 Oryza sativa (japonica cultivar-group) partial mRNA for ZIGA2 protein Length = 390 Score = 125 bits (63), Expect = 2e-25 Identities = 200/245 (81%), Gaps = 3/245 (1%) Strand = Plus / Minus Query: 325 aggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagtacctaggggt 384 ||||||||| || |||| ||||| |||||||||||||||||||||| |||||| || | Sbjct: 390 aggatttcccccaacagagccataggaaggtggggtgcttggctgggggtacctgggagc 331 Query: 385 agcttgttgatcatatccgacgccgagggaaccagcccctccttgttgccttggaagcat 444 ||||||||||||| | || | | ||||||||| |||||||||||| |||||||||| Sbjct: 330 agcttgttgatcaaagcccatgttgagggaacccaaacctccttgttgcattggaagcat 271 Query: 445 gccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgtaatggttttg 504 | |||||||| |||||||| || |||||| ||| ||||||||||||||||| ||| | Sbjct: 270 ggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgtaatgatttgg 214 Query: 505 atgtacaggtggctgaatcatctgctgaggctgctgaggtggaactccaaaactagagtt 564 | || |||||| ||| || ||||||||| ||||| || | ||||||||||| ||| | Sbjct: 213 aggtgcaggtgactggtacagctgctgaggttgctgtggaaggactccaaaactcgaggt 154 Query: 565 accaa 569 ||||| Sbjct: 153 accaa 149
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 91.7 bits (46), Expect = 3e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 316 ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 375 |||||||||||||||||| || |||| ||||| |||||||||||||||||||||| ||| Sbjct: 6117264 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 6117205 Query: 376 cctaggggtagcttgttgatca 397 ||| || | ||||||||||||| Sbjct: 6117204 cctgggagcagcttgttgatca 6117183 Score = 52.0 bits (26), Expect = 0.002 Identities = 55/64 (85%), Gaps = 3/64 (4%) Strand = Plus / Minus Query: 435 ttggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgt 494 ||||||||||| |||||||| |||||||| || |||||| ||| ||||||||||||| Sbjct: 6116647 ttggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgt 6116591 Query: 495 aatg 498 |||| Sbjct: 6116590 aatg 6116587 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 596 gatgctcccagtggtccagatagg 619 ||||||||||||||||||| |||| Sbjct: 6116403 gatgctcccagtggtccaggtagg 6116380
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 91.7 bits (46), Expect = 3e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 316 ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 375 |||||||||||||||||| || |||| ||||| |||||||||||||||||||||| ||| Sbjct: 82746 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 82687 Query: 376 cctaggggtagcttgttgatca 397 ||| || | ||||||||||||| Sbjct: 82686 cctgggagcagcttgttgatca 82665 Score = 52.0 bits (26), Expect = 0.002 Identities = 55/64 (85%), Gaps = 3/64 (4%) Strand = Plus / Minus Query: 435 ttggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgt 494 ||||||||||| |||||||| |||||||| || |||||| ||| ||||||||||||| Sbjct: 82129 ttggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgt 82073 Query: 495 aatg 498 |||| Sbjct: 82072 aatg 82069 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 596 gatgctcccagtggtccagatagg 619 ||||||||||||||||||| |||| Sbjct: 81885 gatgctcccagtggtccaggtagg 81862
>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F05 Length = 147472 Score = 91.7 bits (46), Expect = 3e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 316 ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 375 |||||||||||||||||| || |||| ||||| |||||||||||||||||||||| ||| Sbjct: 138103 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 138044 Query: 376 cctaggggtagcttgttgatca 397 ||| || | ||||||||||||| Sbjct: 138043 cctgggagcagcttgttgatca 138022 Score = 52.0 bits (26), Expect = 0.002 Identities = 55/64 (85%), Gaps = 3/64 (4%) Strand = Plus / Minus Query: 435 ttggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgt 494 ||||||||||| |||||||| |||||||| || |||||| ||| ||||||||||||| Sbjct: 137486 ttggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgt 137430 Query: 495 aatg 498 |||| Sbjct: 137429 aatg 137426 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 596 gatgctcccagtggtccagatagg 619 ||||||||||||||||||| |||| Sbjct: 137242 gatgctcccagtggtccaggtagg 137219
>gb|AY104782.1| Zea mays PCO068830 mRNA sequence Length = 923 Score = 54.0 bits (27), Expect = 6e-04 Identities = 95/117 (81%), Gaps = 3/117 (2%) Strand = Plus / Minus Query: 530 tgaggctgctgaggtggaactccaaaactagagttaccaactaatgttgggttagcagcg 589 ||||||||||| || ||||| |||||||||||||| | || ||| ||| || ||| | | Sbjct: 452 tgaggctgctgtggaggaacaccaaaactagagttgctaattaaggtttggggagctggg 393 Query: 590 cctgctgatgctcccagtggtccagataggaactgcatgtgagcttgaattggagct 646 |||||| || |||| ||||||||||| || |||||||||||||| |||||||| Sbjct: 392 cctgctaatactcctggtggtccagatggg---ggcatgtgagcttgagttggagct 339
>gb|BT016495.1| Zea mays clone Contig328 mRNA sequence Length = 1381 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 530 tgaggctgctgaggtggaactccaaaactagagtt 564 ||||||||||| || ||||| |||||||||||||| Sbjct: 785 tgaggctgctgtggaggaacaccaaaactagagtt 751 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 tatgaaggtggggtgcttggctgg 370 ||||||||||||||| |||||||| Sbjct: 932 tatgaaggtggggtgtttggctgg 909
>ref|XM_676129.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7952.2), mRNA Length = 2985 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 tgcttccacctcccagaccaa 141 ||||||||||||||||||||| Sbjct: 1063 tgcttccacctcccagaccaa 1043
>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3 Contains part of the TNR gene for tenascin R (restrictin, janusin), a novel gene and one CpG island, complete sequence Length = 138636 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 atttttctccagggctttgtg 211 ||||||||||||||||||||| Sbjct: 20262 atttttctccagggctttgtg 20282
>gb|AF231708.1|AF231708 Oncorhynchus mykiss vitelline envelope protein gamma mRNA, complete cds Length = 1397 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 526 ctgctgaggctgctgaggtgg 546 ||||||||||||||||||||| Sbjct: 165 ctgctgaggctgctgaggtgg 145
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tacaggtggctgaatcatctg 528 ||||||||||||||||||||| Sbjct: 24007879 tacaggtggctgaatcatctg 24007899
>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1174_G05 Length = 111202 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tacaggtggctgaatcatctg 528 ||||||||||||||||||||| Sbjct: 49487 tacaggtggctgaatcatctg 49507
>ref|XM_632069.1| Dictyostelium discoideum hypothetical protein (DDB0219237), partial mRNA Length = 4827 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 atcatgtaatggttttgatg 507 |||||||||||||||||||| Sbjct: 2415 atcatgtaatggttttgatg 2434
>gb|BC058057.1| Danio rerio mediator of RNA polymerase II transcription, subunit 25 homolog (yeast), mRNA (cDNA clone MGC:63555 IMAGE:3817335), complete cds Length = 2737 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 526 ctgctgaggctgctgaggtggaac 549 |||||| ||||||||||||||||| Sbjct: 1241 ctgctgtggctgctgaggtggaac 1218
>gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K10, complete sequence Length = 182660 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 tgctgcatcatgtaatggtt 501 |||||||||||||||||||| Sbjct: 17976 tgctgcatcatgtaatggtt 17957
>ref|NM_214766.1| Danio rerio mediator of RNA polymerase II transcription, subunit 25 homolog (yeast) (med25), mRNA Length = 2737 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 526 ctgctgaggctgctgaggtggaac 549 |||||| ||||||||||||||||| Sbjct: 1241 ctgctgtggctgctgaggtggaac 1218
>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence Length = 1590432 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 tgctgcatcatgtaatggtt 501 |||||||||||||||||||| Sbjct: 1367952 tgctgcatcatgtaatggtt 1367933
>gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0092N01, complete sequence Length = 161741 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cacaaatatacaagaaaata 73 |||||||||||||||||||| Sbjct: 138339 cacaaatatacaagaaaata 138358
>gb|AC079815.9| Trypanosoma brucei chromosome 4 clone RPCI93-3M17, complete sequence Length = 144365 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 tgctgcatcatgtaatggtt 501 |||||||||||||||||||| Sbjct: 45839 tgctgcatcatgtaatggtt 45820
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 tgctgcatcatgtaatggtt 501 |||||||||||||||||||| Sbjct: 2140209 tgctgcatcatgtaatggtt 2140228
>gb|BC074468.1| Xenopus laevis MGC84763 protein, mRNA (cDNA clone MGC:84763 IMAGE:6950670), complete cds Length = 2026 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 ttagcagcgcctgctgatgc 600 |||||||||||||||||||| Sbjct: 1789 ttagcagcgcctgctgatgc 1808
>gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genomic sequence, complete sequence Length = 130193 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cacaaatatacaagaaaata 73 |||||||||||||||||||| Sbjct: 60436 cacaaatatacaagaaaata 60417
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cacaaatatacaagaaaata 73 |||||||||||||||||||| Sbjct: 25242272 cacaaatatacaagaaaata 25242291
>gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome 14, complete sequence Length = 236917 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 caaacacaaatatacaagaa 69 |||||||||||||||||||| Sbjct: 130247 caaacacaaatatacaagaa 130266
>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence Length = 191104 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 aatggttttgatgtacaggt 514 |||||||||||||||||||| Sbjct: 182297 aatggttttgatgtacaggt 182316
>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence Length = 169832 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 agctgctcaggcatgttgtt 474 |||||||||||||||||||| Sbjct: 96845 agctgctcaggcatgttgtt 96826
>emb|CR391904.14| Zebrafish DNA sequence from clone DKEY-165J6 in linkage group 3, complete sequence Length = 147391 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 526 ctgctgaggctgctgaggtggaac 549 |||||| ||||||||||||||||| Sbjct: 33168 ctgctgtggctgctgaggtggaac 33145
>gb|AC121985.3| Mus musculus BAC clone RP24-293C3 from chromosome 8, complete sequence Length = 150444 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 tccttgttgccttggaagca 443 |||||||||||||||||||| Sbjct: 13324 tccttgttgccttggaagca 13305
>gb|AC015983.7| Homo sapiens BAC clone RP11-560I19 from 7, complete sequence Length = 177476 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gctagaagcaccgaactact 96 |||||||||||||||||||| Sbjct: 168312 gctagaagcaccgaactact 168293
>gb|AC101811.3| Mus musculus chromosome 19, clone RP24-295O9, complete sequence Length = 146963 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 agaacaccaaacacaaatat 62 |||||||||||||||||||| Sbjct: 58489 agaacaccaaacacaaatat 58470
>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence Length = 213683 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cagggctttgtgcattctgg 219 |||||||||||||||||||| Sbjct: 75708 cagggctttgtgcattctgg 75727
>gb|AC162444.2| Mus musculus chromosome 19, clone RP24-75M1, complete sequence Length = 197112 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 agaacaccaaacacaaatat 62 |||||||||||||||||||| Sbjct: 25664 agaacaccaaacacaaatat 25683
>emb|AL451048.13| Human DNA sequence from clone RP11-298A8 on chromosome Xq26.3-27.3 Contains the gene for a novel protein similar to SPANX family member B1 (SPANXB1) and a novel gene, complete sequence Length = 99793 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 caaacacaaatatacaagaaaata 73 |||||| ||||||||||||||||| Sbjct: 66692 caaacaaaaatatacaagaaaata 66715
>emb|AL136169.6| Human DNA sequence from clone RP4-809E13 on chromosome Xq26.1-27.1 Contains the CXX1 gene for CAAX box 1, two CAAX box 1 (CXX1) pseudogenes and three CpG islands, complete sequence Length = 67201 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 tacagaacaccaaacacaaa 59 |||||||||||||||||||| Sbjct: 38758 tacagaacaccaaacacaaa 38739
>gb|AC096310.9| Rattus norvegicus 1 BAC CH230-121B19 (Children's Hospital Oakland Research Institute) complete sequence Length = 218258 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 aatatgaaacaaatttttct 198 |||||||||||||||||||| Sbjct: 32814 aatatgaaacaaatttttct 32795
>emb|AL844147.9| Mouse DNA sequence from clone RP23-145N4 on chromosome 11 Contains a novel gene, the 3' end of the Acyp2 gene for muscle type acylphosphatase 2 and a proteasome (prosome, macropain) non-ATPase 26S subunit14 (Psmd14) pseudogene, complete sequence Length = 228444 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 ctgaggctgctgaggtggaa 548 |||||||||||||||||||| Sbjct: 89623 ctgaggctgctgaggtggaa 89604
>emb|AL731726.11| Mouse DNA sequence from clone RP23-97P13 on chromosome 11 Contains a novel gene and a CpG island, complete sequence Length = 47745 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tccagggctttgtgcattct 217 |||||||||||||||||||| Sbjct: 6685 tccagggctttgtgcattct 6666
>gb|AC117392.4| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147520 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 aaatatacaagaaaataggg 76 |||||||||||||||||||| Sbjct: 107141 aaatatacaagaaaataggg 107122
>gb|AC110025.4| Homo sapiens chromosome 8, clone CTD-2294G15, complete sequence Length = 108074 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 atatgaaacaaatttttctc 199 |||||||||||||||||||| Sbjct: 97295 atatgaaacaaatttttctc 97314
>gb|AC069359.5| Homo sapiens chromosome 8, clone CTD-2003P13, complete sequence Length = 86991 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 atatgaaacaaatttttctc 199 |||||||||||||||||||| Sbjct: 26971 atatgaaacaaatttttctc 26990
>gb|AC010321.8| Homo sapiens chromosome 16 clone CTD-2540M10, complete sequence Length = 207256 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 agaacaccaaacacaaatatacaa 66 ||||||| |||||||||||||||| Sbjct: 196518 agaacacaaaacacaaatatacaa 196495
>gb|AC161538.7| Mus musculus 6 BAC RP23-1D15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 211933 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 acagcaccatatgaaggtggggtg 361 ||||||||||||||||| |||||| Sbjct: 41138 acagcaccatatgaaggcggggtg 41161
>gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207306 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 acagcaccatatgaaggtggggtg 361 ||||||||||||||||| |||||| Sbjct: 116012 acagcaccatatgaaggcggggtg 116035
>gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-983J7 map 3p, complete sequence Length = 181321 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gaccaagttacacggagcta 155 |||||||||||||||||||| Sbjct: 169863 gaccaagttacacggagcta 169882
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cacaaatatacaagaaaata 73 |||||||||||||||||||| Sbjct: 25333672 cacaaatatacaagaaaata 25333691
>gb|AC109347.3| Homo sapiens BAC clone RP11-73K9 from 4, complete sequence Length = 109668 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 catagggtctctgtgaatat 22 |||||||||||||||||||| Sbjct: 94245 catagggtctctgtgaatat 94226
>gb|AC157911.5| Mus musculus chromosome 19, clone RP24-192F3, complete sequence Length = 168559 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 agaacaccaaacacaaatat 62 |||||||||||||||||||| Sbjct: 25105 agaacaccaaacacaaatat 25086
>gb|AC008938.9| Homo sapiens chromosome 16 clone CTD-2313J23, complete sequence Length = 99486 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 agaacaccaaacacaaatatacaa 66 ||||||| |||||||||||||||| Sbjct: 59716 agaacacaaaacacaaatatacaa 59693
>gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complete sequence Length = 167777 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aacacaaatatacaagaaaa 71 |||||||||||||||||||| Sbjct: 43577 aacacaaatatacaagaaaa 43558
>gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3p, complete sequence Length = 160702 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gaccaagttacacggagcta 155 |||||||||||||||||||| Sbjct: 48377 gaccaagttacacggagcta 48358
>gb|AC161879.5| Mus musculus BAC clone RP23-264A15 from chromosome 1, complete sequence Length = 206995 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 acaaatttttctccagggctttgt 210 ||||| |||||||||||||||||| Sbjct: 136285 acaaacttttctccagggctttgt 136262
>gb|AC140217.3| Mus musculus BAC clone RP23-279O5 from 8, complete sequence Length = 224205 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 tccttgttgccttggaagca 443 |||||||||||||||||||| Sbjct: 48931 tccttgttgccttggaagca 48950
>emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chromosome 14, complete sequence Length = 232110 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 aatggttttgatgtacaggt 514 |||||||||||||||||||| Sbjct: 147611 aatggttttgatgtacaggt 147592
>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome Length = 697724 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 agtaatatgaaacaaatttt 195 |||||||||||||||||||| Sbjct: 678892 agtaatatgaaacaaatttt 678873
>emb|AL805951.6| Mouse DNA sequence from clone RP23-326P3 on chromosome 4, complete sequence Length = 197080 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 aatatgaaacaaatttttct 198 |||||||||||||||||||| Sbjct: 15016 aatatgaaacaaatttttct 14997
>emb|AL732538.6| Mouse DNA sequence from clone RP23-242O9 on chromosome 4, complete sequence Length = 172802 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cagggctttgtgcattctgg 219 |||||||||||||||||||| Sbjct: 37548 cagggctttgtgcattctgg 37529 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,047,279 Number of Sequences: 3902068 Number of extensions: 6047279 Number of successful extensions: 124382 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124069 Number of HSP's gapped (non-prelim): 306 length of query: 646 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 623 effective length of database: 17,143,297,704 effective search space: 10680274469592 effective search space used: 10680274469592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)