ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009239.1| Triticum aestivum clone wlk1.pk0004.e7:fis, full ... 226 1e-56
2ref|XM_660146.1| Cryptosporidium hominis TU502 hypothetical prot... 44 0.10
3ref|XM_626541.1| Cryptosporidium parvum Iowa II hypothetical pro... 44 0.10
4gb|AC008334.8| Drosophila melanogaster clone BACR08K05, complete... 40 1.6
5dbj|AK140684.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 1.6
6dbj|AK138093.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 1.6
7dbj|AK148789.1| Mus musculus 2 days neonate sympathetic ganglion... 40 1.6
8gb|AC156391.6| Mus musculus 10 BAC RP24-258P4 (Roswell Park Canc... 40 1.6
9gb|AE003496.4| Drosophila melanogaster chromosome X, section 48 ... 40 1.6
10gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, compl... 38 6.4
11gb|AC133508.3| Mus musculus BAC clone RP23-383K24 from chromosom... 38 6.4
12ref|XM_985031.1| PREDICTED: Mus musculus SH3 domain protein D19,... 38 6.4
13ref|XM_985001.1| PREDICTED: Mus musculus SH3 domain protein D19,... 38 6.4
14ref|XM_985064.1| PREDICTED: Mus musculus SH3 domain protein D19,... 38 6.4
15ref|XM_979207.1| PREDICTED: Mus musculus SH3 domain protein D19,... 38 6.4
16ref|XM_979129.1| PREDICTED: Mus musculus SH3 domain protein D19,... 38 6.4
17ref|XM_979171.1| PREDICTED: Mus musculus SH3 domain protein D19,... 38 6.4
18ref|XM_979247.1| PREDICTED: Mus musculus SH3 domain protein D19,... 38 6.4
19ref|XM_994427.1| PREDICTED: Mus musculus SH3 domain protein D19,... 38 6.4
20ref|XM_994417.1| PREDICTED: Mus musculus SH3 domain protein D19,... 38 6.4
21ref|XM_994437.1| PREDICTED: Mus musculus SH3 domain protein D19,... 38 6.4
22emb|CR388067.9| Zebrafish DNA sequence from clone CH211-169K21 i... 38 6.4
23gb|AC098708.3| Mus musculus BAC clone RP23-1I16 from 13, complet... 38 6.4
24ref|XM_721770.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 38 6.4
25ref|XM_673344.1| Plasmodium berghei strain ANKA hypothetical pro... 38 6.4
26emb|Z82209.2|HS428A13 Human DNA sequence from clone RP3-428A13 o... 38 6.4
27gb|AC159967.2| Mus musculus chromosome 1, clone RP23-302P9, comp... 38 6.4
28dbj|AK035963.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 38 6.4
29dbj|AK086677.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 38 6.4
30dbj|AK086251.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 38 6.4
31dbj|AK082782.1| Mus musculus ES cells cDNA, RIKEN full-length en... 38 6.4
32gb|AC012181.8| Homo sapiens chromosome 16 clone RP11-325K4, comp... 38 6.4
33gb|AF235497.1|AF235496S2 Mus musculus SH2-containing inositol 5-... 38 6.4
34gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Ca... 38 6.4
35dbj|AP000959.3| Homo sapiens genomic DNA, chromosome 21 clone:RP... 38 6.4
36dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 6.4
37emb|CR383674.8| Zebrafish DNA sequence from clone DKEY-17G17 in ... 38 6.4
38gb|AF004807.1|AF004807 Glycine max dehydrin (GmPM12) mRNA, compl... 38 6.4
39gb|AC102564.7| Mus musculus chromosome 1, clone RP23-210C12, com... 38 6.4 
>gb|BT009239.1| Triticum aestivum clone wlk1.pk0004.e7:fis, full insert mRNA sequence
          Length = 1415

 Score =  226 bits (114), Expect = 1e-56
 Identities = 127/132 (96%)
 Strand = Plus / Minus

                                                                        
Query: 4    tttgacccatggagcctgtgtctacatatattctgaacataataaattggcagttcccct 63
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 tttgacccatggagcctgtgtctacatatattctgaacataataaattggcagttcccct 1179

                                                                        
Query: 64   atagactgaatttcacacgggctatcaatccctnttcactcggtcccttgctgntttagc 123
            ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||| ||
Sbjct: 1178 atagactgaatttcacacgagctatcaatccttcttcactcggtcccttgctgctttcgc 1119

                        
Query: 124  agagcttgagcg 135
            ||||||||||||
Sbjct: 1118 agagcttgagcg 1107
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>ref|XM_660146.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20376)
           partial mRNA
          Length = 1587

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 29  atatattctgaacataataaat 50
           ||||||||||||||||||||||
Sbjct: 183 atatattctgaacataataaat 204
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>ref|XM_626541.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_3540),
           partial mRNA
          Length = 7338

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 29  atatattctgaacataataaat 50
           ||||||||||||||||||||||
Sbjct: 186 atatattctgaacataataaat 207
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>gb|AC008334.8| Drosophila melanogaster clone BACR08K05, complete sequence
          Length = 154336

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    atatattctgaacataataa 48
             ||||||||||||||||||||
Sbjct: 84150 atatattctgaacataataa 84131
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>dbj|AK140684.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930089B07
            product:unclassifiable, full insert sequence
          Length = 1754

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   tgtctacatatattctgaac 41
            ||||||||||||||||||||
Sbjct: 1459 tgtctacatatattctgaac 1440
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>dbj|AK138093.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130090I24 product:protein-L-isoaspartate
            (D-aspartate) O-methyltransferase 1, full insert sequence
          Length = 4596

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   tgtctacatatattctgaac 41
            ||||||||||||||||||||
Sbjct: 3842 tgtctacatatattctgaac 3823
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>dbj|AK148789.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120446L02
            product:protein-L-isoaspartate (D-aspartate)
            O-methyltransferase 1, full insert sequence
          Length = 1370

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   tgtctacatatattctgaac 41
            ||||||||||||||||||||
Sbjct: 1098 tgtctacatatattctgaac 1079
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>gb|AC156391.6| Mus musculus 10 BAC RP24-258P4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186703

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     tgtctacatatattctgaac 41
              ||||||||||||||||||||
Sbjct: 136459 tgtctacatatattctgaac 136440
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>gb|AE003496.4| Drosophila melanogaster chromosome X, section 48 of 74 of the complete
              sequence
          Length = 299868

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     atatattctgaacataataa 48
              ||||||||||||||||||||
Sbjct: 268699 atatattctgaacataataa 268680
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>gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, complete sequence
          Length = 212613

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    tctacatatattctgaaca 42
             |||||||||||||||||||
Sbjct: 66987 tctacatatattctgaaca 66969
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>gb|AC133508.3| Mus musculus BAC clone RP23-383K24 from chromosome 3, complete sequence
          Length = 192136

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    tctacatatattctgaaca 42
             |||||||||||||||||||
Sbjct: 35251 tctacatatattctgaaca 35269
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>ref|XM_985031.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 2
            (Sh3d19), mRNA
          Length = 6826

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 4818 tctacatatattctgaaca 4800
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>ref|XM_985001.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 1
            (Sh3d19), mRNA
          Length = 5245

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 3237 tctacatatattctgaaca 3219
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>ref|XM_985064.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 3
            (Sh3d19), mRNA
          Length = 6414

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 4406 tctacatatattctgaaca 4388
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>ref|XM_979207.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 3
            (Sh3d19), mRNA
          Length = 6822

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 4818 tctacatatattctgaaca 4800
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>ref|XM_979129.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 1
            (Sh3d19), mRNA
          Length = 5241

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 3237 tctacatatattctgaaca 3219
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>ref|XM_979171.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 2
            (Sh3d19), mRNA
          Length = 6410

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 4406 tctacatatattctgaaca 4388
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>ref|XM_979247.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 4
            (Sh3d19), mRNA
          Length = 6410

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 4406 tctacatatattctgaaca 4388
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>ref|XM_994427.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 2
            (Sh3d19), mRNA
          Length = 6826

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 4818 tctacatatattctgaaca 4800
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>ref|XM_994417.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 1
            (Sh3d19), mRNA
          Length = 5245

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 3237 tctacatatattctgaaca 3219
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>ref|XM_994437.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 3
            (Sh3d19), mRNA
          Length = 6414

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 4406 tctacatatattctgaaca 4388
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>emb|CR388067.9| Zebrafish DNA sequence from clone CH211-169K21 in linkage group 25,
              complete sequence
          Length = 163519

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 32     tattctgaacataataaat 50
              |||||||||||||||||||
Sbjct: 135943 tattctgaacataataaat 135925
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>gb|AC098708.3| Mus musculus BAC clone RP23-1I16 from 13, complete sequence
          Length = 200069

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    atattctgaacataataaa 49
             |||||||||||||||||||
Sbjct: 56585 atattctgaacataataaa 56603
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>ref|XM_721770.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06250)
            partial mRNA
          Length = 2292

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   atattctgaacataataaa 49
            |||||||||||||||||||
Sbjct: 1515 atattctgaacataataaa 1533
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>ref|XM_673344.1| Plasmodium berghei strain ANKA hypothetical protein (PB000233.01.0)
           partial mRNA
          Length = 1395

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 31  atattctgaacataataaa 49
           |||||||||||||||||||
Sbjct: 618 atattctgaacataataaa 636
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>emb|Z82209.2|HS428A13 Human DNA sequence from clone RP3-428A13 on chromosome X Contains a
              intracellular membrane-associated calcium-independent
              phospholipase A2 (IPLA2) pseudogene, complete sequence
          Length = 154235

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 29     atatattctgaacataataaatt 51
              |||||||||||| ||||||||||
Sbjct: 136893 atatattctgaaaataataaatt 136915
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>gb|AC159967.2| Mus musculus chromosome 1, clone RP23-302P9, complete sequence
          Length = 185146

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     attctgaacataataaatt 51
              |||||||||||||||||||
Sbjct: 104479 attctgaacataataaatt 104461
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>dbj|AK035963.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630021F01 product:SH3 domain
            protein D19, full insert sequence
          Length = 3783

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 3186 tctacatatattctgaaca 3168
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>dbj|AK086677.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930045D09 product:unclassifiable, full
            insert sequence
          Length = 3458

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 1452 tctacatatattctgaaca 1434
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>dbj|AK086251.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930016F13 product:unclassifiable, full
            insert sequence
          Length = 3457

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tctacatatattctgaaca 42
            |||||||||||||||||||
Sbjct: 1454 tctacatatattctgaaca 1436
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>dbj|AK082782.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:C330014I12 product:unclassifiable, full insert
           sequence
          Length = 1289

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 24  tctacatatattctgaaca 42
           |||||||||||||||||||
Sbjct: 808 tctacatatattctgaaca 790
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>gb|AC012181.8| Homo sapiens chromosome 16 clone RP11-325K4, complete sequence
          Length = 189712

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     atattctgaacataataaa 49
              |||||||||||||||||||
Sbjct: 132872 atattctgaacataataaa 132890
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>gb|AF235497.1|AF235496S2 Mus musculus SH2-containing inositol 5-phosphatase (Ship) gene,
            intron 2
          Length = 2641

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 33   attctgaacataataaatt 51
            |||||||||||||||||||
Sbjct: 1058 attctgaacataataaatt 1076
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>gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 198488

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     catggagcctgtgtctaca 29
              |||||||||||||||||||
Sbjct: 104495 catggagcctgtgtctaca 104477
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>dbj|AP000959.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-797G14, complete
            sequence
          Length = 201112

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 33   attctgaacataataaatt 51
            |||||||||||||||||||
Sbjct: 3316 attctgaacataataaatt 3334
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>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     attctgaacataataaatt 51
              |||||||||||||||||||
Sbjct: 277512 attctgaacataataaatt 277530
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>emb|CR383674.8| Zebrafish DNA sequence from clone DKEY-17G17 in linkage group 25,
              complete sequence
          Length = 212086

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 32     tattctgaacataataaat 50
              |||||||||||||||||||
Sbjct: 185149 tattctgaacataataaat 185167
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>gb|AF004807.1|AF004807 Glycine max dehydrin (GmPM12) mRNA, complete cds
          Length = 730

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 29  atatattctgaacataata 47
           |||||||||||||||||||
Sbjct: 641 atatattctgaacataata 623
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>gb|AC102564.7| Mus musculus chromosome 1, clone RP23-210C12, complete sequence
          Length = 230474

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    attctgaacataataaatt 51
             |||||||||||||||||||
Sbjct: 29351 attctgaacataataaatt 29333


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 913,468
Number of Sequences: 3902068
Number of extensions: 913468
Number of successful extensions: 65590
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65542
Number of HSP's gapped (non-prelim): 48
length of query: 135
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 114
effective length of database: 17,151,101,840
effective search space: 1955225609760
effective search space used: 1955225609760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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