Clone Name | rbah63g04 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009239.1| Triticum aestivum clone wlk1.pk0004.e7:fis, full insert mRNA sequence Length = 1415 Score = 226 bits (114), Expect = 1e-56 Identities = 127/132 (96%) Strand = Plus / Minus Query: 4 tttgacccatggagcctgtgtctacatatattctgaacataataaattggcagttcccct 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1238 tttgacccatggagcctgtgtctacatatattctgaacataataaattggcagttcccct 1179 Query: 64 atagactgaatttcacacgggctatcaatccctnttcactcggtcccttgctgntttagc 123 ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||| || Sbjct: 1178 atagactgaatttcacacgagctatcaatccttcttcactcggtcccttgctgctttcgc 1119 Query: 124 agagcttgagcg 135 |||||||||||| Sbjct: 1118 agagcttgagcg 1107
>ref|XM_660146.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20376) partial mRNA Length = 1587 Score = 44.1 bits (22), Expect = 0.10 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 atatattctgaacataataaat 50 |||||||||||||||||||||| Sbjct: 183 atatattctgaacataataaat 204
>ref|XM_626541.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_3540), partial mRNA Length = 7338 Score = 44.1 bits (22), Expect = 0.10 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 atatattctgaacataataaat 50 |||||||||||||||||||||| Sbjct: 186 atatattctgaacataataaat 207
>gb|AC008334.8| Drosophila melanogaster clone BACR08K05, complete sequence Length = 154336 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 atatattctgaacataataa 48 |||||||||||||||||||| Sbjct: 84150 atatattctgaacataataa 84131
>dbj|AK140684.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930089B07 product:unclassifiable, full insert sequence Length = 1754 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tgtctacatatattctgaac 41 |||||||||||||||||||| Sbjct: 1459 tgtctacatatattctgaac 1440
>dbj|AK138093.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130090I24 product:protein-L-isoaspartate (D-aspartate) O-methyltransferase 1, full insert sequence Length = 4596 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tgtctacatatattctgaac 41 |||||||||||||||||||| Sbjct: 3842 tgtctacatatattctgaac 3823
>dbj|AK148789.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120446L02 product:protein-L-isoaspartate (D-aspartate) O-methyltransferase 1, full insert sequence Length = 1370 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tgtctacatatattctgaac 41 |||||||||||||||||||| Sbjct: 1098 tgtctacatatattctgaac 1079
>gb|AC156391.6| Mus musculus 10 BAC RP24-258P4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 186703 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tgtctacatatattctgaac 41 |||||||||||||||||||| Sbjct: 136459 tgtctacatatattctgaac 136440
>gb|AE003496.4| Drosophila melanogaster chromosome X, section 48 of 74 of the complete sequence Length = 299868 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 atatattctgaacataataa 48 |||||||||||||||||||| Sbjct: 268699 atatattctgaacataataa 268680
>gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, complete sequence Length = 212613 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 66987 tctacatatattctgaaca 66969
>gb|AC133508.3| Mus musculus BAC clone RP23-383K24 from chromosome 3, complete sequence Length = 192136 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 35251 tctacatatattctgaaca 35269
>ref|XM_985031.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 2 (Sh3d19), mRNA Length = 6826 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 4818 tctacatatattctgaaca 4800
>ref|XM_985001.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 1 (Sh3d19), mRNA Length = 5245 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 3237 tctacatatattctgaaca 3219
>ref|XM_985064.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 3 (Sh3d19), mRNA Length = 6414 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 4406 tctacatatattctgaaca 4388
>ref|XM_979207.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 3 (Sh3d19), mRNA Length = 6822 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 4818 tctacatatattctgaaca 4800
>ref|XM_979129.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 1 (Sh3d19), mRNA Length = 5241 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 3237 tctacatatattctgaaca 3219
>ref|XM_979171.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 2 (Sh3d19), mRNA Length = 6410 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 4406 tctacatatattctgaaca 4388
>ref|XM_979247.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 4 (Sh3d19), mRNA Length = 6410 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 4406 tctacatatattctgaaca 4388
>ref|XM_994427.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 2 (Sh3d19), mRNA Length = 6826 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 4818 tctacatatattctgaaca 4800
>ref|XM_994417.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 1 (Sh3d19), mRNA Length = 5245 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 3237 tctacatatattctgaaca 3219
>ref|XM_994437.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant 3 (Sh3d19), mRNA Length = 6414 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 4406 tctacatatattctgaaca 4388
>emb|CR388067.9| Zebrafish DNA sequence from clone CH211-169K21 in linkage group 25, complete sequence Length = 163519 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 tattctgaacataataaat 50 ||||||||||||||||||| Sbjct: 135943 tattctgaacataataaat 135925
>gb|AC098708.3| Mus musculus BAC clone RP23-1I16 from 13, complete sequence Length = 200069 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 atattctgaacataataaa 49 ||||||||||||||||||| Sbjct: 56585 atattctgaacataataaa 56603
>ref|XM_721770.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06250) partial mRNA Length = 2292 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 atattctgaacataataaa 49 ||||||||||||||||||| Sbjct: 1515 atattctgaacataataaa 1533
>ref|XM_673344.1| Plasmodium berghei strain ANKA hypothetical protein (PB000233.01.0) partial mRNA Length = 1395 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 atattctgaacataataaa 49 ||||||||||||||||||| Sbjct: 618 atattctgaacataataaa 636
>emb|Z82209.2|HS428A13 Human DNA sequence from clone RP3-428A13 on chromosome X Contains a intracellular membrane-associated calcium-independent phospholipase A2 (IPLA2) pseudogene, complete sequence Length = 154235 Score = 38.2 bits (19), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 29 atatattctgaacataataaatt 51 |||||||||||| |||||||||| Sbjct: 136893 atatattctgaaaataataaatt 136915
>gb|AC159967.2| Mus musculus chromosome 1, clone RP23-302P9, complete sequence Length = 185146 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 attctgaacataataaatt 51 ||||||||||||||||||| Sbjct: 104479 attctgaacataataaatt 104461
>dbj|AK035963.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630021F01 product:SH3 domain protein D19, full insert sequence Length = 3783 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 3186 tctacatatattctgaaca 3168
>dbj|AK086677.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930045D09 product:unclassifiable, full insert sequence Length = 3458 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 1452 tctacatatattctgaaca 1434
>dbj|AK086251.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930016F13 product:unclassifiable, full insert sequence Length = 3457 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 1454 tctacatatattctgaaca 1436
>dbj|AK082782.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330014I12 product:unclassifiable, full insert sequence Length = 1289 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tctacatatattctgaaca 42 ||||||||||||||||||| Sbjct: 808 tctacatatattctgaaca 790
>gb|AC012181.8| Homo sapiens chromosome 16 clone RP11-325K4, complete sequence Length = 189712 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 atattctgaacataataaa 49 ||||||||||||||||||| Sbjct: 132872 atattctgaacataataaa 132890
>gb|AF235497.1|AF235496S2 Mus musculus SH2-containing inositol 5-phosphatase (Ship) gene, intron 2 Length = 2641 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 attctgaacataataaatt 51 ||||||||||||||||||| Sbjct: 1058 attctgaacataataaatt 1076
>gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198488 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 catggagcctgtgtctaca 29 ||||||||||||||||||| Sbjct: 104495 catggagcctgtgtctaca 104477
>dbj|AP000959.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-797G14, complete sequence Length = 201112 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 attctgaacataataaatt 51 ||||||||||||||||||| Sbjct: 3316 attctgaacataataaatt 3334
>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105 Length = 340000 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 attctgaacataataaatt 51 ||||||||||||||||||| Sbjct: 277512 attctgaacataataaatt 277530
>emb|CR383674.8| Zebrafish DNA sequence from clone DKEY-17G17 in linkage group 25, complete sequence Length = 212086 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 tattctgaacataataaat 50 ||||||||||||||||||| Sbjct: 185149 tattctgaacataataaat 185167
>gb|AF004807.1|AF004807 Glycine max dehydrin (GmPM12) mRNA, complete cds Length = 730 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 atatattctgaacataata 47 ||||||||||||||||||| Sbjct: 641 atatattctgaacataata 623
>gb|AC102564.7| Mus musculus chromosome 1, clone RP23-210C12, complete sequence Length = 230474 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 attctgaacataataaatt 51 ||||||||||||||||||| Sbjct: 29351 attctgaacataataaatt 29333 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 913,468 Number of Sequences: 3902068 Number of extensions: 913468 Number of successful extensions: 65590 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65542 Number of HSP's gapped (non-prelim): 48 length of query: 135 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 114 effective length of database: 17,151,101,840 effective search space: 1955225609760 effective search space used: 1955225609760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)