Clone Name | rbah63g01 |
---|---|
Clone Library Name | barley_pub |
>VE2_HPV45 (P36794) Regulatory protein E2| Length = 368 Score = 31.2 bits (69), Expect = 1.5 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Frame = -2 Query: 265 PQAQPDPTRRPRACRTTGDHH--VEFSIGREKTVSSTRRGELRKVRN*CGMHTMP 107 P Q T+RPR C T HH V + SST + RKV C +T P Sbjct: 241 PHIQTPATKRPRQCGLTEQHHGRVNTHVHNPLLCSSTSNNKRRKV---CSGNTTP 292
>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor| Length = 1775 Score = 31.2 bits (69), Expect = 1.5 Identities = 17/50 (34%), Positives = 21/50 (42%) Frame = -3 Query: 246 RPGVPEPAGLLVIITWNSALAGKKQYPARGGGSSEKSGINAACTPCRAGP 97 RPG P AG AG+ P + G K + C+ CRAGP Sbjct: 532 RPGTPGAAGA----PGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGP 577
>CYOE_ECOLI (P0AEA5) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O| synthase) Length = 296 Score = 30.8 bits (68), Expect = 2.0 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 68 YILHIHIHILGPARHGVHAALIPDFSELPPPRAGYC 175 +++++ ++ L RH V+ LI S PP GYC Sbjct: 117 FVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYC 152
>CYOE_ECOL6 (P0AEA6) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O| synthase) Length = 296 Score = 30.8 bits (68), Expect = 2.0 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 68 YILHIHIHILGPARHGVHAALIPDFSELPPPRAGYC 175 +++++ ++ L RH V+ LI S PP GYC Sbjct: 117 FVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYC 152
>CYOE_ECO57 (P0AEA7) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O| synthase) Length = 296 Score = 30.8 bits (68), Expect = 2.0 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 68 YILHIHIHILGPARHGVHAALIPDFSELPPPRAGYC 175 +++++ ++ L RH V+ LI S PP GYC Sbjct: 117 FVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYC 152
>SEM3F_HUMAN (Q13275) Semaphorin-3F precursor (Semaphorin IV) (Sema IV) (Sema| III/F) Length = 785 Score = 30.0 bits (66), Expect = 3.4 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = +2 Query: 71 ILHIHIHILGPARHGVHAALIP--DFSELPPPRAG 169 + + +H+LG R VHAAL P S PPP AG Sbjct: 689 VTRVQLHVLG--RDAVHAALFPPLSMSAPPPPGAG 721
>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor| Length = 674 Score = 29.6 bits (65), Expect = 4.4 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 9/64 (14%) Frame = -3 Query: 264 PKRNPIRPGVPEPAGLLVI----ITWNSALAGKKQYPARGG-----GSSEKSGINAACTP 112 P+ P PG+P PAG+ V + G + +P G G + + G CTP Sbjct: 137 PRGPPGPPGIPGPAGISVPGKPGPQGPTGEPGPRGFPGEKGTSGVPGLNGQKGEMGHCTP 196 Query: 111 CRAG 100 CR G Sbjct: 197 CRPG 200
>HFR1_ARATH (Q9FE22) Long hypocotyl in far-red 1 (bHLH-like protein HFR1)| (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light) Length = 292 Score = 29.6 bits (65), Expect = 4.4 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +2 Query: 89 HILGPARHGVHAALIPDFSELPPPRAGYCFFPANAEFHVMITSSPAGS 232 H L PA H + + LIP + PP F ++++ + TSSPA S Sbjct: 220 HGLNPANHMMPSPLIPALNWPLPPFTNISFPHSSSQSLFLTTSSPASS 267
>CP6G2_DROME (Q9V675) Probable cytochrome P450 6g2 (EC 1.14.-.-) (CYPVIG2)| Length = 519 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = +2 Query: 176 FFPANAEFHVMITSSPAGSGTPGRIGLRLGY 268 F P N + H T P G G G IG R GY Sbjct: 437 FSPENRKLHTPYTYMPFGLGPHGCIGERFGY 467
>ITK_HUMAN (Q08881) Tyrosine-protein kinase ITK/TSK (EC 2.7.10.2)| (T-cell-specific kinase) (Tyrosine-protein kinase Lyk) (Kinase EMT) Length = 620 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/58 (27%), Positives = 31/58 (53%) Frame = -1 Query: 218 YW*SSRGIQHWPGKNSIQHEEGGAQKSQELMRHAHHAGPVLIYVYVYGVCIDQSDLCL 45 YW + + + EE ++++ +M+ +H P L V +YGVC++Q+ +CL Sbjct: 381 YWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSH---PKL--VQLYGVCLEQAPICL 433
>DNL3_MOUSE (P97386) DNA ligase 3 (EC 6.5.1.1) (DNA ligase III)| (Polydeoxyribonucleotide synthase [ATP] 3) Length = 1015 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -3 Query: 195 SALAGKKQYPARGGGSSEKSGINAACTPCRAGPN 94 + +AG + P GG S E G + PC+ P+ Sbjct: 844 AVVAGDEASPTTGGSSGENEGTAGSAGPCKGPPS 877
>CG026_HUMAN (Q96N11) Protein C7orf26| Length = 449 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = +2 Query: 80 IHIHILGPARHGVHAALIPDF-SELPPPRAGYCFFPANAEFHVMITSSP 223 + + I GP + HAAL P F + P GY PA+ H + + P Sbjct: 385 LQLVISGPVQQSPHAALPPGFYPHIHTPPLGYGAVPAHPAAHPALPTHP 433 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,697,694 Number of Sequences: 219361 Number of extensions: 1185672 Number of successful extensions: 4219 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3826 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4217 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)