Clone Name | rbah63f20 |
---|---|
Clone Library Name | barley_pub |
>PTG3C_MYCGE (P47315) PTS system glucose-specific EIICBA component (EIICBA-Glc)| (EII-Glc/EIII-Glc) [Includes: Glucose permease IIC component (PTS system glucose-specific EIIC component); Glucose-specific phosphotransferase enzyme IIB component (EC 2.7.1.6 Length = 908 Score = 30.0 bits (66), Expect = 4.2 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -3 Query: 283 VNIANGSAQGAYALSRGLLTMMILPFGICVLFYSPLY 173 + I G GA +L G + ++PFG+ FY+PL+ Sbjct: 223 LGILGGRGYGANSLIFGYIERALIPFGVHHAFYAPLW 259
>SYL_STRAW (Q82C66) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 962 Score = 29.6 bits (65), Expect = 5.5 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%) Frame = -3 Query: 403 PKHRTMIYAFDRAFEGSFASLAAPAVGLVT------EKIYGYDAKTVNIANG 266 P H T +AF RAFE S + P+ T + YDAK VN ++G Sbjct: 432 PAHDTRDFAFARAFELSMRCVVEPSDDRGTDPSTWDDAFASYDAKIVNSSSG 483
>HNF1_SALSA (Q91474) Hepatocyte nuclear factor 1 (HNF-1) (SHNF1)| Length = 559 Score = 29.3 bits (64), Expect = 7.2 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 6/40 (15%) Frame = -2 Query: 482 HTLLHGHHHQLVCYFGKQPHVC------GGSPSQAPHHDL 381 HTLL HHH+ V G P V S S APHH L Sbjct: 333 HTLLETHHHKPVSGGGPLPPVSTLTSLHSLSASPAPHHGL 372
>DRD3_PANTR (Q5IS72) D(3) dopamine receptor| Length = 400 Score = 28.9 bits (63), Expect = 9.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 214 LPFGICVLFYSPLYLVFKHDRDNAKVARFKDQ 119 LPFG+ VL Y+ +Y+V K R + R Q Sbjct: 199 LPFGVTVLVYARIYMVLKQRRRKRILTRQNSQ 230
>PTG3C_MYCPN (P75569) PTS system glucose-specific EIICBA component (EIICBA-Glc)| (EII-Glc/EIII-Glc) [Includes: Glucose permease IIC component (PTS system glucose-specific EIIC component); Glucose-specific phosphotransferase enzyme IIB component (EC 2.7.1.6 Length = 940 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 268 GSAQGAYALSRGLLTMMILPFGICVLFYSPLY 173 G GA +L G + ++PFG+ FY+PL+ Sbjct: 248 GKGYGANSLIFGYIERSLIPFGVHHAFYAPLW 279
>WISP2_HUMAN (O76076) WNT1-inducible signaling pathway protein 2 precursor| (WISP-2) (Connective tissue growth factor-like protein) (CTGF-L) (Connective tissue growth factor-related protein 58) Length = 250 Score = 28.9 bits (63), Expect = 9.3 Identities = 25/87 (28%), Positives = 30/87 (34%), Gaps = 11/87 (12%) Frame = -2 Query: 395 PHHDLRL*PGF*GLVCLIGCSCCRLGH*EDIWL*RQDCKHRQRISTRGVCAVERATNH-- 222 PH +R G C+ CS ED+ L DC H +R+ G C E Sbjct: 115 PHCSIRCRCEDGGFTCVPLCS-------EDVRLPSWDCPHPRRVEVLGKCCPEWVCGQGG 167 Query: 221 ---------DDPPFWYLCPILQPFVPC 168 P F L L P VPC Sbjct: 168 GLGTQPLPAQGPQFSGLVSSLPPGVPC 194 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,625,682 Number of Sequences: 219361 Number of extensions: 1445697 Number of successful extensions: 3891 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3802 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3891 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)