ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63f20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PTG3C_MYCGE (P47315) PTS system glucose-specific EIICBA componen... 30 4.2
2SYL_STRAW (Q82C66) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 30 5.5
3HNF1_SALSA (Q91474) Hepatocyte nuclear factor 1 (HNF-1) (SHNF1) 29 7.2
4DRD3_PANTR (Q5IS72) D(3) dopamine receptor 29 9.3
5PTG3C_MYCPN (P75569) PTS system glucose-specific EIICBA componen... 29 9.3
6WISP2_HUMAN (O76076) WNT1-inducible signaling pathway protein 2 ... 29 9.3

>PTG3C_MYCGE (P47315) PTS system glucose-specific EIICBA component (EIICBA-Glc)|
           (EII-Glc/EIII-Glc) [Includes: Glucose permease IIC
           component (PTS system glucose-specific EIIC component);
           Glucose-specific phosphotransferase enzyme IIB component
           (EC 2.7.1.6
          Length = 908

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 283 VNIANGSAQGAYALSRGLLTMMILPFGICVLFYSPLY 173
           + I  G   GA +L  G +   ++PFG+   FY+PL+
Sbjct: 223 LGILGGRGYGANSLIFGYIERALIPFGVHHAFYAPLW 259



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>SYL_STRAW (Q82C66) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 962

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = -3

Query: 403 PKHRTMIYAFDRAFEGSFASLAAPAVGLVT------EKIYGYDAKTVNIANG 266
           P H T  +AF RAFE S   +  P+    T      +    YDAK VN ++G
Sbjct: 432 PAHDTRDFAFARAFELSMRCVVEPSDDRGTDPSTWDDAFASYDAKIVNSSSG 483



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>HNF1_SALSA (Q91474) Hepatocyte nuclear factor 1 (HNF-1) (SHNF1)|
          Length = 559

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
 Frame = -2

Query: 482 HTLLHGHHHQLVCYFGKQPHVC------GGSPSQAPHHDL 381
           HTLL  HHH+ V   G  P V         S S APHH L
Sbjct: 333 HTLLETHHHKPVSGGGPLPPVSTLTSLHSLSASPAPHHGL 372



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>DRD3_PANTR (Q5IS72) D(3) dopamine receptor|
          Length = 400

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 214 LPFGICVLFYSPLYLVFKHDRDNAKVARFKDQ 119
           LPFG+ VL Y+ +Y+V K  R    + R   Q
Sbjct: 199 LPFGVTVLVYARIYMVLKQRRRKRILTRQNSQ 230



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>PTG3C_MYCPN (P75569) PTS system glucose-specific EIICBA component (EIICBA-Glc)|
           (EII-Glc/EIII-Glc) [Includes: Glucose permease IIC
           component (PTS system glucose-specific EIIC component);
           Glucose-specific phosphotransferase enzyme IIB component
           (EC 2.7.1.6
          Length = 940

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 268 GSAQGAYALSRGLLTMMILPFGICVLFYSPLY 173
           G   GA +L  G +   ++PFG+   FY+PL+
Sbjct: 248 GKGYGANSLIFGYIERSLIPFGVHHAFYAPLW 279



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>WISP2_HUMAN (O76076) WNT1-inducible signaling pathway protein 2 precursor|
           (WISP-2) (Connective tissue growth factor-like protein)
           (CTGF-L) (Connective tissue growth factor-related
           protein 58)
          Length = 250

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 25/87 (28%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
 Frame = -2

Query: 395 PHHDLRL*PGF*GLVCLIGCSCCRLGH*EDIWL*RQDCKHRQRISTRGVCAVERATNH-- 222
           PH  +R      G  C+  CS       ED+ L   DC H +R+   G C  E       
Sbjct: 115 PHCSIRCRCEDGGFTCVPLCS-------EDVRLPSWDCPHPRRVEVLGKCCPEWVCGQGG 167

Query: 221 ---------DDPPFWYLCPILQPFVPC 168
                      P F  L   L P VPC
Sbjct: 168 GLGTQPLPAQGPQFSGLVSSLPPGVPC 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,625,682
Number of Sequences: 219361
Number of extensions: 1445697
Number of successful extensions: 3891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3891
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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