Clone Name | rbah63f20 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_477101.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1574 Score = 323 bits (163), Expect = 3e-85 Identities = 310/359 (86%) Strand = Plus / Minus Query: 144 gcattgtccctgtcatgcttgaacacaaggtacaaagggctgtagaataggacacagata 203 ||||| |||| |||| ||||||||||||||||||| ||||||||||| ||||| |||| Sbjct: 1152 gcattctcccggtcacgcttgaacacaaggtacaaggggctgtagaacaggacgcagacg 1093 Query: 204 ccaaaagggaggatcatcatggttagtagccctctcgacagcgcatacgccccttgtgct 263 || ||||| | |||||||| || || || || || || ||||||||||| |||| |||| Sbjct: 1092 ccgaaaggaacaatcatcattgtcagaagtcccctggagagcgcatacgctccttctgct 1033 Query: 264 gatccgttggcgatgtttacagtcttggcgtcatagccatatatcttctcagtgaccaag 323 || ||||| || | ||| ||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 1032 gacccgttcgcaaggttcacagtcttgctgtcatagccatatatcttctcggtgaccaag 973 Query: 324 ccgacagcaggagcagccaatgaggcaaacgagccctcaaaagcccggtcaaaggcgtag 383 |||||||| ||||| |||| ||||| || |||||||| || || ||||| ||||||||| Sbjct: 972 ccgacagcgggagctgccagcgaggcgaatgagccctcgaatgcacggtcgaaggcgtag 913 Query: 384 atcatggtgcggtgcttgggagggactacctccgcaaacatggggttgtttgccgaagta 443 |||||||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 912 atcatggtccggtgcttgggagggactacctccgcaaacatggggttgtttgcagaggtg 853 Query: 444 gcacaccagctgatggtgatgcccatgaagaagagtgtgacggcataggcaaaccagta 502 || |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 852 gcgcaccagcttatggtgatgcccatgaagaagagggtgacggcgtaggcggaccagta 794
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 323 bits (163), Expect = 3e-85 Identities = 310/359 (86%) Strand = Plus / Minus Query: 144 gcattgtccctgtcatgcttgaacacaaggtacaaagggctgtagaataggacacagata 203 ||||| |||| |||| ||||||||||||||||||| ||||||||||| ||||| |||| Sbjct: 5916087 gcattctcccggtcacgcttgaacacaaggtacaaggggctgtagaacaggacgcagacg 5916028 Query: 204 ccaaaagggaggatcatcatggttagtagccctctcgacagcgcatacgccccttgtgct 263 || ||||| | |||||||| || || || || || || ||||||||||| |||| |||| Sbjct: 5916027 ccgaaaggaacaatcatcattgtcagaagtcccctggagagcgcatacgctccttctgct 5915968 Query: 264 gatccgttggcgatgtttacagtcttggcgtcatagccatatatcttctcagtgaccaag 323 || ||||| || | ||| ||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 5915967 gacccgttcgcaaggttcacagtcttgctgtcatagccatatatcttctcggtgaccaag 5915908 Query: 324 ccgacagcaggagcagccaatgaggcaaacgagccctcaaaagcccggtcaaaggcgtag 383 |||||||| ||||| |||| ||||| || |||||||| || || ||||| ||||||||| Sbjct: 5915907 ccgacagcgggagctgccagcgaggcgaatgagccctcgaatgcacggtcgaaggcgtag 5915848 Query: 384 atcatggtgcggtgcttgggagggactacctccgcaaacatggggttgtttgccgaagta 443 |||||||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 5915847 atcatggtccggtgcttgggagggactacctccgcaaacatggggttgtttgcagaggtg 5915788 Query: 444 gcacaccagctgatggtgatgcccatgaagaagagtgtgacggcataggcaaaccagta 502 || |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 5915787 gcgcaccagcttatggtgatgcccatgaagaagagggtgacggcgtaggcggaccagta 5915729
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 323 bits (163), Expect = 3e-85 Identities = 310/359 (86%) Strand = Plus / Minus Query: 144 gcattgtccctgtcatgcttgaacacaaggtacaaagggctgtagaataggacacagata 203 ||||| |||| |||| ||||||||||||||||||| ||||||||||| ||||| |||| Sbjct: 58535 gcattctcccggtcacgcttgaacacaaggtacaaggggctgtagaacaggacgcagacg 58476 Query: 204 ccaaaagggaggatcatcatggttagtagccctctcgacagcgcatacgccccttgtgct 263 || ||||| | |||||||| || || || || || || ||||||||||| |||| |||| Sbjct: 58475 ccgaaaggaacaatcatcattgtcagaagtcccctggagagcgcatacgctccttctgct 58416 Query: 264 gatccgttggcgatgtttacagtcttggcgtcatagccatatatcttctcagtgaccaag 323 || ||||| || | ||| ||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 58415 gacccgttcgcaaggttcacagtcttgctgtcatagccatatatcttctcggtgaccaag 58356 Query: 324 ccgacagcaggagcagccaatgaggcaaacgagccctcaaaagcccggtcaaaggcgtag 383 |||||||| ||||| |||| ||||| || |||||||| || || ||||| ||||||||| Sbjct: 58355 ccgacagcgggagctgccagcgaggcgaatgagccctcgaatgcacggtcgaaggcgtag 58296 Query: 384 atcatggtgcggtgcttgggagggactacctccgcaaacatggggttgtttgccgaagta 443 |||||||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 58295 atcatggtccggtgcttgggagggactacctccgcaaacatggggttgtttgcagaggtg 58236 Query: 444 gcacaccagctgatggtgatgcccatgaagaagagtgtgacggcataggcaaaccagta 502 || |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 58235 gcgcaccagcttatggtgatgcccatgaagaagagggtgacggcgtaggcggaccagta 58177
>dbj|AK121714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079D24, full insert sequence Length = 1917 Score = 323 bits (163), Expect = 3e-85 Identities = 310/359 (86%) Strand = Plus / Minus Query: 144 gcattgtccctgtcatgcttgaacacaaggtacaaagggctgtagaataggacacagata 203 ||||| |||| |||| ||||||||||||||||||| ||||||||||| ||||| |||| Sbjct: 1499 gcattctcccggtcacgcttgaacacaaggtacaaggggctgtagaacaggacgcagacg 1440 Query: 204 ccaaaagggaggatcatcatggttagtagccctctcgacagcgcatacgccccttgtgct 263 || ||||| | |||||||| || || || || || || ||||||||||| |||| |||| Sbjct: 1439 ccgaaaggaacaatcatcattgtcagaagtcccctggagagcgcatacgctccttctgct 1380 Query: 264 gatccgttggcgatgtttacagtcttggcgtcatagccatatatcttctcagtgaccaag 323 || ||||| || | ||| ||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 1379 gacccgttcgcaaggttcacagtcttgctgtcatagccatatatcttctcggtgaccaag 1320 Query: 324 ccgacagcaggagcagccaatgaggcaaacgagccctcaaaagcccggtcaaaggcgtag 383 |||||||| ||||| |||| ||||| || |||||||| || || ||||| ||||||||| Sbjct: 1319 ccgacagcgggagctgccagcgaggcgaatgagccctcgaatgcacggtcgaaggcgtag 1260 Query: 384 atcatggtgcggtgcttgggagggactacctccgcaaacatggggttgtttgccgaagta 443 |||||||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1259 atcatggtccggtgcttgggagggactacctccgcaaacatggggttgtttgcagaggtg 1200 Query: 444 gcacaccagctgatggtgatgcccatgaagaagagtgtgacggcataggcaaaccagta 502 || |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 1199 gcgcaccagcttatggtgatgcccatgaagaagagggtgacggcgtaggcggaccagta 1141
>dbj|AK058996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G03, full insert sequence Length = 1574 Score = 323 bits (163), Expect = 3e-85 Identities = 310/359 (86%) Strand = Plus / Minus Query: 144 gcattgtccctgtcatgcttgaacacaaggtacaaagggctgtagaataggacacagata 203 ||||| |||| |||| ||||||||||||||||||| ||||||||||| ||||| |||| Sbjct: 1152 gcattctcccggtcacgcttgaacacaaggtacaaggggctgtagaacaggacgcagacg 1093 Query: 204 ccaaaagggaggatcatcatggttagtagccctctcgacagcgcatacgccccttgtgct 263 || ||||| | |||||||| || || || || || || ||||||||||| |||| |||| Sbjct: 1092 ccgaaaggaacaatcatcattgtcagaagtcccctggagagcgcatacgctccttctgct 1033 Query: 264 gatccgttggcgatgtttacagtcttggcgtcatagccatatatcttctcagtgaccaag 323 || ||||| || | ||| ||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 1032 gacccgttcgcaaggttcacagtcttgctgtcatagccatatatcttctcggtgaccaag 973 Query: 324 ccgacagcaggagcagccaatgaggcaaacgagccctcaaaagcccggtcaaaggcgtag 383 |||||||| ||||| |||| ||||| || |||||||| || || ||||| ||||||||| Sbjct: 972 ccgacagcgggagctgccagcgaggcgaatgagccctcgaatgcacggtcgaaggcgtag 913 Query: 384 atcatggtgcggtgcttgggagggactacctccgcaaacatggggttgtttgccgaagta 443 |||||||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 912 atcatggtccggtgcttgggagggactacctccgcaaacatggggttgtttgcagaggtg 853 Query: 444 gcacaccagctgatggtgatgcccatgaagaagagtgtgacggcataggcaaaccagta 502 || |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 852 gcgcaccagcttatggtgatgcccatgaagaagagggtgacggcgtaggcggaccagta 794
>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete sequence Length = 166888 Score = 238 bits (120), Expect = 2e-59 Identities = 311/375 (82%) Strand = Plus / Minus Query: 160 gcttgaacacaaggtacaaagggctgtagaataggacacagataccaaaagggaggatca 219 |||||||||||| ||||| ||||||||||| | || || | |||||||| | |||| Sbjct: 130613 gcttgaacacaaagtacagtgggctgtagaacaagaagcacaggccaaaaggaacaatca 130554 Query: 220 tcatggttagtagccctctcgacagcgcatacgccccttgtgctgatccgttggcgatgt 279 |||| || | |||||| ||||| || |||||||||||| | | ||||| || | | | Sbjct: 130553 tcattgtcaatagccccctcgagagtgcatacgcccctgctaccgatccattttccagat 130494 Query: 280 ttacagtcttggcgtcatagccatatatcttctcagtgaccaagccgacagcaggagcag 339 | || ||||| |||| |||||||| |||||||||||||||| ||| ||||||||||||| Sbjct: 130493 tgacggtctttgcgttgtagccatagatcttctcagtgaccatgccaacagcaggagcag 130434 Query: 340 ccaatgaggcaaacgagccctcaaaagcccggtcaaaggcgtagatcatggtgcggtgct 399 ||| |||||||| || ||||| || || ||||| ||||| |||||||| |||||||||| Sbjct: 130433 ccagggaggcaaatgaaccctcgaacgcgcggtcgaaggcatagatcatcgtgcggtgct 130374 Query: 400 tgggagggactacctccgcaaacatggggttgtttgccgaagtagcacaccagctgatgg 459 ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 130373 tgggagggactacctccgcaaacatggggttgtttgcgcaagtagcgcaccagctgatgg 130314 Query: 460 tgatgcccatgaagaagagtgtgacggcataggcaaaccagtagtcagttgactgangaa 519 | || ||||| |||||||| ||||| ||| | ||| |||||||||| ||||||| ||| Sbjct: 130313 taatccccatcaagaagagagtgacagcaaaagcagaccagtagtcgactgactgaggaa 130254 Query: 520 tgacagtgaggagga 534 |||| || ||||||| Sbjct: 130253 tgactgtaaggagga 130239
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 238 bits (120), Expect = 2e-59 Identities = 311/375 (82%) Strand = Plus / Plus Query: 160 gcttgaacacaaggtacaaagggctgtagaataggacacagataccaaaagggaggatca 219 |||||||||||| ||||| ||||||||||| | || || | |||||||| | |||| Sbjct: 33534467 gcttgaacacaaagtacagtgggctgtagaacaagaagcacaggccaaaaggaacaatca 33534526 Query: 220 tcatggttagtagccctctcgacagcgcatacgccccttgtgctgatccgttggcgatgt 279 |||| || | |||||| ||||| || |||||||||||| | | ||||| || | | | Sbjct: 33534527 tcattgtcaatagccccctcgagagtgcatacgcccctgctaccgatccattttccagat 33534586 Query: 280 ttacagtcttggcgtcatagccatatatcttctcagtgaccaagccgacagcaggagcag 339 | || ||||| |||| |||||||| |||||||||||||||| ||| ||||||||||||| Sbjct: 33534587 tgacggtctttgcgttgtagccatagatcttctcagtgaccatgccaacagcaggagcag 33534646 Query: 340 ccaatgaggcaaacgagccctcaaaagcccggtcaaaggcgtagatcatggtgcggtgct 399 ||| |||||||| || ||||| || || ||||| ||||| |||||||| |||||||||| Sbjct: 33534647 ccagggaggcaaatgaaccctcgaacgcgcggtcgaaggcatagatcatcgtgcggtgct 33534706 Query: 400 tgggagggactacctccgcaaacatggggttgtttgccgaagtagcacaccagctgatgg 459 ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 33534707 tgggagggactacctccgcaaacatggggttgtttgcgcaagtagcgcaccagctgatgg 33534766 Query: 460 tgatgcccatgaagaagagtgtgacggcataggcaaaccagtagtcagttgactgangaa 519 | || ||||| |||||||| ||||| ||| | ||| |||||||||| ||||||| ||| Sbjct: 33534767 taatccccatcaagaagagagtgacagcaaaagcagaccagtagtcgactgactgaggaa 33534826 Query: 520 tgacagtgaggagga 534 |||| || ||||||| Sbjct: 33534827 tgactgtaaggagga 33534841
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 238 bits (120), Expect = 2e-59 Identities = 311/375 (82%) Strand = Plus / Plus Query: 160 gcttgaacacaaggtacaaagggctgtagaataggacacagataccaaaagggaggatca 219 |||||||||||| ||||| ||||||||||| | || || | |||||||| | |||| Sbjct: 33624939 gcttgaacacaaagtacagtgggctgtagaacaagaagcacaggccaaaaggaacaatca 33624998 Query: 220 tcatggttagtagccctctcgacagcgcatacgccccttgtgctgatccgttggcgatgt 279 |||| || | |||||| ||||| || |||||||||||| | | ||||| || | | | Sbjct: 33624999 tcattgtcaatagccccctcgagagtgcatacgcccctgctaccgatccattttccagat 33625058 Query: 280 ttacagtcttggcgtcatagccatatatcttctcagtgaccaagccgacagcaggagcag 339 | || ||||| |||| |||||||| |||||||||||||||| ||| ||||||||||||| Sbjct: 33625059 tgacggtctttgcgttgtagccatagatcttctcagtgaccatgccaacagcaggagcag 33625118 Query: 340 ccaatgaggcaaacgagccctcaaaagcccggtcaaaggcgtagatcatggtgcggtgct 399 ||| |||||||| || ||||| || || ||||| ||||| |||||||| |||||||||| Sbjct: 33625119 ccagggaggcaaatgaaccctcgaacgcgcggtcgaaggcatagatcatcgtgcggtgct 33625178 Query: 400 tgggagggactacctccgcaaacatggggttgtttgccgaagtagcacaccagctgatgg 459 ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 33625179 tgggagggactacctccgcaaacatggggttgtttgcgcaagtagcgcaccagctgatgg 33625238 Query: 460 tgatgcccatgaagaagagtgtgacggcataggcaaaccagtagtcagttgactgangaa 519 | || ||||| |||||||| ||||| ||| | ||| |||||||||| ||||||| ||| Sbjct: 33625239 taatccccatcaagaagagagtgacagcaaaagcagaccagtagtcgactgactgaggaa 33625298 Query: 520 tgacagtgaggagga 534 |||| || ||||||| Sbjct: 33625299 tgactgtaaggagga 33625313
>dbj|AK070392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049P03, full insert sequence Length = 1928 Score = 238 bits (120), Expect = 2e-59 Identities = 311/375 (82%) Strand = Plus / Minus Query: 160 gcttgaacacaaggtacaaagggctgtagaataggacacagataccaaaagggaggatca 219 |||||||||||| ||||| ||||||||||| | || || | |||||||| | |||| Sbjct: 1517 gcttgaacacaaagtacagtgggctgtagaacaagaagcacaggccaaaaggaacaatca 1458 Query: 220 tcatggttagtagccctctcgacagcgcatacgccccttgtgctgatccgttggcgatgt 279 |||| || | |||||| ||||| || |||||||||||| | | ||||| || | | | Sbjct: 1457 tcattgtcaatagccccctcgagagtgcatacgcccctgctaccgatccattttccagat 1398 Query: 280 ttacagtcttggcgtcatagccatatatcttctcagtgaccaagccgacagcaggagcag 339 | || ||||| |||| |||||||| |||||||||||||||| ||| ||||||||||||| Sbjct: 1397 tgacggtctttgcgttgtagccatagatcttctcagtgaccatgccaacagcaggagcag 1338 Query: 340 ccaatgaggcaaacgagccctcaaaagcccggtcaaaggcgtagatcatggtgcggtgct 399 ||| |||||||| || ||||| || || ||||| ||||| |||||||| |||||||||| Sbjct: 1337 ccagggaggcaaatgaaccctcgaacgcgcggtcgaaggcatagatcatcgtgcggtgct 1278 Query: 400 tgggagggactacctccgcaaacatggggttgtttgccgaagtagcacaccagctgatgg 459 ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 1277 tgggagggactacctccgcaaacatggggttgtttgcgcaagtagcgcaccagctgatgg 1218 Query: 460 tgatgcccatgaagaagagtgtgacggcataggcaaaccagtagtcagttgactgangaa 519 | || ||||| |||||||| ||||| ||| | ||| |||||||||| ||||||| ||| Sbjct: 1217 taatccccatcaagaagagagtgacagcaaaagcagaccagtagtcgactgactgaggaa 1158 Query: 520 tgacagtgaggagga 534 |||| || ||||||| Sbjct: 1157 tgactgtaaggagga 1143
>gb|M22207.1|SUT217G T.gratilla 217g gene encoding 217g protein, complete cds Length = 4702 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 454 tgatggtgatgcccatgaagaagag 478 ||||||||||||||||||||||||| Sbjct: 3161 tgatggtgatgcccatgaagaagag 3185
>ref|NM_119843.2| Arabidopsis thaliana carbohydrate transporter/ sugar porter/ transporter AT4G36790 mRNA, complete cds Length = 1725 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 363 aaagcccggtcaaaggcgtagatcatggtgcggtgcttgggagggactacctccgcaaac 422 ||||| |||||||| ||||||||||| || |||||| | ||||| || || || |||||| Sbjct: 1399 aaagcacggtcaaacgcgtagatcattgtacggtgccttggaggaacgacttctgcaaac 1340 Query: 423 at 424 || Sbjct: 1339 at 1338
>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2 Length = 198354 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Plus Query: 363 aaagcccggtcaaaggcgtagatcatggtgcggtgcttgggagggactacctccgcaaac 422 ||||| |||||||| ||||||||||| || |||||| | ||||| || || || |||||| Sbjct: 31372 aaagcacggtcaaacgcgtagatcattgtacggtgccttggaggaacgacttctgcaaac 31431 Query: 423 at 424 || Sbjct: 31432 at 31433
>gb|AY122924.1| Arabidopsis thaliana unknown protein (At4g36790) mRNA, complete cds Length = 1501 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 363 aaagcccggtcaaaggcgtagatcatggtgcggtgcttgggagggactacctccgcaaac 422 ||||| |||||||| ||||||||||| || |||||| | ||||| || || || |||||| Sbjct: 1211 aaagcacggtcaaacgcgtagatcattgtacggtgccttggaggaacgacttctgcaaac 1152 Query: 423 at 424 || Sbjct: 1151 at 1150
>gb|AY063899.1| Arabidopsis thaliana unknown protein (At4g36790) mRNA, complete cds Length = 1643 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 363 aaagcccggtcaaaggcgtagatcatggtgcggtgcttgggagggactacctccgcaaac 422 ||||| |||||||| ||||||||||| || |||||| | ||||| || || || |||||| Sbjct: 1298 aaagcacggtcaaacgcgtagatcattgtacggtgccttggaggaacgacttctgcaaac 1239 Query: 423 at 424 || Sbjct: 1238 at 1237
>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86 Length = 198780 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 363 aaagcccggtcaaaggcgtagatcatggtgcggtgcttgggagggactacctccgcaaac 422 ||||| |||||||| ||||||||||| || |||||| | ||||| || || || |||||| Sbjct: 25606 aaagcacggtcaaacgcgtagatcattgtacggtgccttggaggaacgacttctgcaaac 25547 Query: 423 at 424 || Sbjct: 25546 at 25545
>emb|BX828097.1|CNS0A31Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH52ZB02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1528 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 363 aaagcccggtcaaaggcgtagatcatggtgcggtgcttgggagggactacctccgcaaac 422 ||||| |||||||| ||||||||||| || |||||| | ||||| || || || |||||| Sbjct: 1271 aaagcacggtcaaacgcgtagatcattgtacggtgccttggaggaacgacttctgcaaac 1212 Query: 423 at 424 || Sbjct: 1211 at 1210
>emb|BX827767.1|CNS0A2ZM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH1ZE08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1580 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 363 aaagcccggtcaaaggcgtagatcatggtgcggtgcttgggagggactacctccgcaaac 422 ||||| |||||||| ||||||||||| || |||||| | ||||| || || || |||||| Sbjct: 1316 aaagcacggtcaaacgcgtagatcattgtacggtgccttggaggaacgacttctgcaaac 1257 Query: 423 at 424 || Sbjct: 1256 at 1255
>emb|BX826852.1|CNS0A356 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB69ZD02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1355 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 363 aaagcccggtcaaaggcgtagatcatggtgcggtgcttgggagggactacctccgcaaac 422 ||||| |||||||| ||||||||||| || |||||| | ||||| || || || |||||| Sbjct: 1008 aaagcacggtcaaacgcgtagatcattgtacggtgccttggaggaacgacttctgcaaac 949 Query: 423 at 424 || Sbjct: 948 at 947
>emb|BX005415.5| Zebrafish DNA sequence from clone DKEY-21I5 in linkage group 5, complete sequence Length = 243510 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 65 tgaatccttatcagaaacatca 86 |||||||||||||||||||||| Sbjct: 102067 tgaatccttatcagaaacatca 102088
>emb|BX004981.4| Zebrafish DNA sequence from clone CH211-169J7 in linkage group 7, complete sequence Length = 162525 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 65 tgaatccttatcagaaacatca 86 |||||||||||||||||||||| Sbjct: 50606 tgaatccttatcagaaacatca 50627
>ref|NM_105952.3| Arabidopsis thaliana transmembrane receptor AT1G72940 mRNA, complete cds Length = 1525 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cttgaatccttatcagaaac 82 |||||||||||||||||||| Sbjct: 836 cttgaatccttatcagaaac 817
>gb|AY768346.1| Hepatitis C virus isolate 53416-R core E1 gene, partial sequence Length = 369 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 tgtcatgcttgaacacaaggtaca 177 ||||| |||||||||||||||||| Sbjct: 147 tgtcaggcttgaacacaaggtaca 124
>gb|AY617673.1| Sterkiella histriomuscorum clone UGC1O0004_F20_R genomic sequence Length = 643 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 atttacaattacatcaatac 55 |||||||||||||||||||| Sbjct: 96 atttacaattacatcaatac 115
>ref|XM_865628.1| PREDICTED: Bos taurus similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12), transcript variant 2 (LOC505995), mRNA Length = 2668 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tcatgcttgaacacaaggta 175 |||||||||||||||||||| Sbjct: 2042 tcatgcttgaacacaaggta 2023
>ref|XM_582373.2| PREDICTED: Bos taurus similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12), transcript variant 1 (LOC505995), mRNA Length = 2650 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tcatgcttgaacacaaggta 175 |||||||||||||||||||| Sbjct: 2024 tcatgcttgaacacaaggta 2005
>gb|AY149960.1| Arabidopsis thaliana At1g72940/F3N23_14 mRNA, complete cds Length = 1116 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cttgaatccttatcagaaac 82 |||||||||||||||||||| Sbjct: 796 cttgaatccttatcagaaac 777
>emb|Y08085.1|HSMXAF139 Hyphomicrobium sp. mxaF gene, partial, strain IFAM 1391 Length = 553 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tgatgcccatgaagaagagt 479 |||||||||||||||||||| Sbjct: 520 tgatgcccatgaagaagagt 501
>emb|Y08076.1|HSMXAF520 Hyphomicrobium sp. mxaF gene, partial, strain B 520 Length = 541 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tgatgcccatgaagaagagt 479 |||||||||||||||||||| Sbjct: 511 tgatgcccatgaagaagagt 492
>emb|Y08074.1|HSMXAF69 Hyphomicrobium sp. mxaF gene, partial, strain B 69 Length = 546 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tgatgcccatgaagaagagt 479 |||||||||||||||||||| Sbjct: 513 tgatgcccatgaagaagagt 494
>emb|Y08083.1|HHMXAF H.hollandicum mxaF gene, partial Length = 544 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tgatgcccatgaagaagagt 479 |||||||||||||||||||| Sbjct: 511 tgatgcccatgaagaagagt 492
>emb|Y08080.1|HZMXAF H.zavarzinii mxaF gene, partial Length = 540 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tgatgcccatgaagaagagt 479 |||||||||||||||||||| Sbjct: 512 tgatgcccatgaagaagagt 493
>emb|Y08070.1|HVMXAF H.vulgare mxaF gene, partial Length = 547 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tgatgcccatgaagaagagt 479 |||||||||||||||||||| Sbjct: 514 tgatgcccatgaagaagagt 495
>gb|AC162301.3| Mus musculus chromosome 15, clone RP24-282H6, complete sequence Length = 171176 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctctgatttacaattacatc 50 |||||||||||||||||||| Sbjct: 105222 ctctgatttacaattacatc 105203
>emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6 Length = 307120 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 taccttggcattgtccctgt 156 |||||||||||||||||||| Sbjct: 55219 taccttggcattgtccctgt 55238
>gb|AC165446.16| Medicago truncatula clone mth2-61p21, complete sequence Length = 135557 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 cgatgtttacagtcttggcgtcat 297 ||||||||||||||| |||||||| Sbjct: 115739 cgatgtttacagtctcggcgtcat 115716
>gb|AY064998.1| Arabidopsis thaliana At1g72940/F3N23_14 mRNA, complete cds Length = 1413 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cttgaatccttatcagaaac 82 |||||||||||||||||||| Sbjct: 836 cttgaatccttatcagaaac 817
>emb|BX813603.1|CNS0ACAH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1290 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cttgaatccttatcagaaac 82 |||||||||||||||||||| Sbjct: 804 cttgaatccttatcagaaac 785
>emb|BX817099.1|CNS0ABWC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZE07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1353 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cttgaatccttatcagaaac 82 |||||||||||||||||||| Sbjct: 814 cttgaatccttatcagaaac 795
>emb|BX816156.1|CNS0ABXN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH31ZB09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1343 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cttgaatccttatcagaaac 82 |||||||||||||||||||| Sbjct: 823 cttgaatccttatcagaaac 804
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cttgaatccttatcagaaac 82 |||||||||||||||||||| Sbjct: 45739 cttgaatccttatcagaaac 45720 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,133,584 Number of Sequences: 3902068 Number of extensions: 4133584 Number of successful extensions: 77743 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77588 Number of HSP's gapped (non-prelim): 151 length of query: 534 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 511 effective length of database: 17,143,297,704 effective search space: 8760225126744 effective search space used: 8760225126744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)