Clone Name	rbah63f19
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	827	0.0
2	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	652	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	650	0.0
4	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	476	e-131
5	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	458	e-126
6	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	444	e-121
7	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	371	1e-99
8	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	248	1e-62
9	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
10	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
11	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
12	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
13	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	135	1e-28
14	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	6e-28
15	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	6e-28
16	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	6e-28
17	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	133	6e-28
18	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	6e-28
19	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	6e-28
20	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	133	6e-28
21	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	2e-24
22	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	119	8e-24
23	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	2e-18
24	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	100	8e-18
25	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	1e-16
26	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	1e-16
27	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	96	1e-16
28	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	1e-16
29	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	90	7e-15
30	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	82	2e-12
31	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	7e-12
32	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
33	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
34	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	74	4e-10
35	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	68	3e-08
36	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	68	3e-08
37	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	1e-04
38	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	44	0.39
39	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.39
40	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	44	0.39
41	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	1.6
42	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	1.6
43	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
44	gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	1.6
45	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	1.6
46	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	1.6
47	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	1.6
48	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	1.6
49	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	6.1
50	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	6.1
51	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	6.1
52	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	6.1
53	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	6.1
54	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	6.1
55	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	6.1
56	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	6.1
57	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	6.1
58	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	6.1
59	gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc...	40	6.1
60	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	6.1
61	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	6.1
62	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	6.1
63	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	6.1
64	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	6.1
65	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	6.1
66	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	6.1
67	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	6.1
68	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	6.1
69	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	6.1
70	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	6.1
71	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	6.1
72	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	6.1
73	gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23...	40	6.1
74	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	6.1

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  827 bits (417), Expect = 0.0
 Identities = 455/461 (98%), Gaps = 5/461 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 59
            ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643

                                                                        
Query: 60   gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 118
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583

                                                                        
Query: 119  gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 177
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523

                                                                        
Query: 178  gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacctcctccta 236
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctccta 1463

                                                                        
Query: 237  tgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaaccagtct 295
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1462 tgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaaccagtct 1403

                                                                        
Query: 296  tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 1343

                                                                        
Query: 356  gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 1283

                                                     
Query: 416  cgactgtcatctttggctgctcgaaggtcacgggcccgtcc 456
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 cgactgtcatctttggctgctcgaaggtcacgggcccgtcc 1242

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  652 bits (329), Expect = 0.0
 Identities = 428/458 (93%), Gaps = 11/458 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgc 64
           |||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggtatactcaatatcttta----tatattaacaaaacatgcccagcaatcgcttggatgc 709

                                                                       
Query: 65  gatgcgg-acttaggta-----ggtaaaacatcagatattaaaagtggcatgcttaaaag 118
           ||||||| |||||||||     | |||||||||||||||||||  |||||||||||||||
Sbjct: 708 gatgcggtacttaggtacaaaggataaaacatcagatattaaat-tggcatgcttaaaag 650

                                                                       
Query: 119 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 178
           ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||
Sbjct: 649 gtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagttcttggcagtctgg 590

                                                                       
Query: 179 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctcctcctatg 238
           |||||||| ||| |||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 589 tcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccctttacctcctcctatg 530

                                                                       
Query: 239 cagcaagagatggtgggtgtgtatggagaattttctaaccgtagaaggaaccagtcttca 298
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 529 cagcaagagatggtgggtgtgtatggagaatgttctaaccgtagaaggtaccagtcttca 470

                                                                       
Query: 299 tcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgca 410

                                                                       
Query: 359 cacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcga 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 409 cacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcca 350

                                                 
Query: 419 ctgtcatctttggctgctcgaaggtcacgggcccgtcc 456
           ||||||||||||||||||| |||||||| || ||||||
Sbjct: 349 ctgtcatctttggctgctcaaaggtcactggtccgtcc 312

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  650 bits (328), Expect = 0.0
 Identities = 411/436 (94%), Gaps = 7/436 (1%)
 Strand = Plus / Minus

                                                                        
Query: 27   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 80
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 81   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 140
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 141  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 200
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 201  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 260
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 261  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 320
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                        
Query: 321  cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238

                                                                        
Query: 381  ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178

                            
Query: 441  ggtcacgggcccgtcc 456
            |||||| || ||||||
Sbjct: 1177 ggtcactggtccgtcc 1162

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  476 bits (240), Expect = e-131
 Identities = 380/423 (89%), Gaps = 9/423 (2%)
 Strand = Plus / Minus

                                                                        
Query: 41   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 94
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 95   -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 153
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 154  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 213
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 214  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 273
             ||||||||||||||||||||||||||||||||||||||||||||  ||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356

                                                                        
Query: 274  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 333
            |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                                                                        
Query: 334  ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 393
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236

                                                                        
Query: 394  tgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccg 453
            || |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176

               
Query: 454  tcc 456
            |||
Sbjct: 1175 tcc 1173

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  458 bits (231), Expect = e-126
 Identities = 231/231 (100%)
 Strand = Plus / Minus

                                                                        
Query: 226  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 286  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                                        
Query: 346  tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176

                                                               
Query: 406  agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 456
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 7125



 Score =  448 bits (226), Expect = e-123
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7752 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 7693

                                                                        
Query: 61   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7692 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 7633

                                                                        
Query: 121  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7632 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 7573

                                                              
Query: 181  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7572 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 7523



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 352  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 411
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                         
Query: 412  ttctcgactgtcatctttggctgctcgaa 440
            ||||| |  |||||||| ||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  444 bits (224), Expect = e-121
 Identities = 227/228 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 61   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                                        
Query: 121  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213

                                                            
Query: 181  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 228
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165



 Score =  359 bits (181), Expect = 5e-96
 Identities = 181/181 (100%)
 Strand = Plus / Minus

                                                                        
Query: 276  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                                        
Query: 336  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048

                                                                        
Query: 396  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988

             
Query: 456  c 456
            |
Sbjct: 987  c 987

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  371 bits (187), Expect = 1e-99
 Identities = 199/203 (98%)
 Strand = Plus / Minus

                                                                       
Query: 254 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 313
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 314 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                                                                       
Query: 374 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129

                                  
Query: 434 gctcgaaggtcacgggcccgtcc 456
           |||| |||||||| || ||||||
Sbjct: 128 gctcaaaggtcactggtccgtcc 106

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  248 bits (125), Expect = 1e-62
 Identities = 167/181 (92%)
 Strand = Plus / Minus

                                                                        
Query: 276  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 335
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                                        
Query: 336  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 395
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244

                                                                        
Query: 396  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 455
             |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||
Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184

             
Query: 456  c 456
            |
Sbjct: 1183 c 1183



 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 100  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 159
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 160  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 219
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 220  tcctttacc 228
            |||||||||
Sbjct: 1369 tcctttacc 1361

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191

                                                          
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1145

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229

                                                          
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1183

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228

                                                          
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1182

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012

                                                          
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 966

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233

                                                          
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1187

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 109    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 169    ggcattttggtcggtgcaaccttccggcacgggca 203
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score =  105 bits (53), Expect = 1e-19
 Identities = 140/169 (82%)
 Strand = Plus / Plus

                                                                          
Query: 272    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 331
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                          
Query: 332    ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 391
               ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425

                                                               
Query: 392    tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
              |||  |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 108474



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 127    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 186
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 187    accttccggcacggg 201
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 109   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 169   ggcattttggtcggtgcaaccttccggcacgggca 203
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score =  105 bits (53), Expect = 1e-19
 Identities = 140/169 (82%)
 Strand = Plus / Plus

                                                                         
Query: 272   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 331
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                         
Query: 332   ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 391
              ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302

                                                              
Query: 392   tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
             |||  |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 30351



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 127   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 186
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 187   accttccggcacggg 201
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 169  ggcattttggtcggtgcaaccttccggcacgggca 203
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197

                                                          
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaa 1151

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 169  ggcattttggtcggtgcaaccttccggcacgggca 203
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 135/164 (82%)
 Strand = Plus / Minus

                                                                        
Query: 277  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 336
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                                        
Query: 337  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 396
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190

                                                        
Query: 397  ccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
            |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1146

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 109      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 169      ggcattttggtcggtgcaaccttccggcacgggca 203
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score =  105 bits (53), Expect = 1e-19
 Identities = 140/169 (82%)
 Strand = Plus / Plus

                                                                            
Query: 272      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 331
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                            
Query: 332      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 391
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564

                                                                 
Query: 392      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 28303613



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 127      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 186
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 187      accttccggcacggg 201
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 109      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 169      ggcattttggtcggtgcaaccttccggcacgggca 203
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score =  105 bits (53), Expect = 1e-19
 Identities = 140/169 (82%)
 Strand = Plus / Plus

                                                                            
Query: 272      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 331
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                            
Query: 332      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 391
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013

                                                                 
Query: 392      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 28286062



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 127      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 186
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 187      accttccggcacggg 201
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 6e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 169  ggcattttggtcggtgcaaccttccggcacgggca 203
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 135/164 (82%)
 Strand = Plus / Minus

                                                                        
Query: 277  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 336
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                                        
Query: 337  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 396
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225

                                                        
Query: 397  ccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
            |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1181

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 115 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 174
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 175 ttggtcggtgcaaccttccggcacgggca 203
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 8e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240

                                                          
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
              |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaa 1194

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 109 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 169 ggcattttggtcggtgcaaccttccggcacgggca 203
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                       
Query: 275 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                                       
Query: 335 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
           ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446

                                                         
Query: 395 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
             |||||||| |  ||||| ||||  |||||||| |||||||||||
Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaa 400

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                       
Query: 281 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 340
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 341 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 400
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                                   
Query: 401 actctagcagcttctcgactgtcatctttggctgctcgaa 440
           |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 281  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 340
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 341  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 400
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 401  actctagcagcttctcgactgtcatctttggctgctcgaa 440
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 138/168 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 332
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                                        
Query: 333  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 392
            ||||| |||  |||| || |||||||| | ||| || || ||||||||||| || |||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888

                                                            
Query: 393  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 440
            ||  |||||||| |||||||| || |  |||||||| |||||| ||||
Sbjct: 887  gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaa 840



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 119  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 178
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 179  tcggtgcaaccttc 192
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 281  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 340
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 341  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 400
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 401  actctagcagcttctcgactgtcatctttggctgctcgaa 440
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 132/161 (81%)
 Strand = Plus / Minus

                                                                        
Query: 280  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 339
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 340  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 399
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                     
Query: 400  tactctagcagcttctcgactgtcatctttggctgctcgaa 440
            ||||| |||||||| || |  |||||||| |||||| ||||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaa 1034



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 119  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 178
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 179  tcggtgcaaccttc 192
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 352  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 411
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                         
Query: 412  ttctcgactgtcatctttggctgctcgaa 440
            ||||| |  |||||||| ||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 298 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 357
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 358 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 413
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 109     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 169     ggcattttggtcggtgcaaccttccggcacgggca 203
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 109   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 169   ggcattttggtcggtgcaaccttccggcacgggca 203
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 352  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 411
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                         
Query: 412  ttctcgactgtcatctttggctgctcgaa 440
            |||||||  |||||||| ||||| |||||
Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaa 1154

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 119  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 178
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 179  tcggtgcaaccttc 192
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 119  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 178
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 179  tcggtgcaaccttc 192
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 309  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 368
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 369  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 428
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                        
Query: 429  tggctgctcgaa 440
             |||||||||||
Sbjct: 1243 cggctgctcgaa 1232

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 301  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 350
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 314   catcacccagagctgcctggct 335
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 14    aatatatttagagatatattaa 35
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    tatatttagagatatattaac 36
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tatatttagagatatattaac 36
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      aaacatcagatattaaaagtg 105
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   atgcagcaagagatggtgggt 256
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 352  agctgcacacgcttgacattgtcctgctc 380
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      aaacatcagatattaaaagtg 105
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 85     aaacatcagatattaaaagtg 105
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 16   tatatttagagatatattaac 36
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 221  cctttacctcctcctatgca 240
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 310  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 369
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 370  ttgtcctgctcctggacgagcatg 393
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 gtcagcaagctgcacacgct 364
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     tcagatattaaaagtggcat 109
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     tcagatattaaaagtggcat 109
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    tcagatattaaaagtggcat 109
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    aatatatttagagatatatt 33
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    ttgacattgtcctgctcctg 383
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 118  ggtgtaaaggcagctgccgtcgtcgctc 145
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    aaacatgcccagcaatcgcttgga 61
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   tggcatgcttaaaaggtgta 123
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    ttgacattgtcctgctcctg 383
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 210 cttgctgtgctcctttacctcctc 233
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736

---

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    aatatatttagagatatatt 33
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     atcagatattaaaagtggcatgct 112
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,627,434
Number of Sequences: 3902068
Number of extensions: 3627434
Number of successful extensions: 72102
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 71817
Number of HSP's gapped (non-prelim): 235
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---