ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase ... 248 3e-66
2PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6... 46 3e-05
3PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase p... 33 0.22
4PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.... 31 1.5
5RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigment... 30 1.9
6Y2577_MYCTU (Q50644) Hypothetical protein Rv2577/MT2654 30 3.2
7DSCAM_HUMAN (O60469) Down syndrome cell adhesion molecule precur... 29 5.5
8GUND_CLOTM (P04954) Endoglucanase D precursor (EC 3.2.1.4) (EGD)... 28 9.4
9GBLP_DROME (O18640) Guanine nucleotide-binding protein beta subu... 28 9.4

>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)|
           (Fragments)
          Length = 368

 Score =  248 bits (634), Expect = 3e-66
 Identities = 115/115 (100%), Positives = 115/115 (100%)
 Frame = -3

Query: 430 GHVHNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDH 251
           GHVHNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDH
Sbjct: 254 GHVHNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDH 313

Query: 250 DYGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS 86
           DYGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS
Sbjct: 314 DYGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS 368



to top

>PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6-optimum acid|
           phosphatase) (APase6)
          Length = 614

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
 Frame = -3

Query: 430 GHVHNYERTCPLYQSQCVNA-----DKTHYSGTMNGTIFVVAGGGG-----SHLSSYTTA 281
           GH+H YER  PL  +  ++      + T+Y+        ++ G  G     S  S     
Sbjct: 498 GHIHWYERLYPLGANGTIDTAAIVNNNTYYAHNGKSITHIINGMAGNIESHSEFSDGEGL 557

Query: 280 IPKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTI 152
               ++     YGF+KLT FN ++L +E ++  DG V DS T+
Sbjct: 558 TNITALLDKVHYGFSKLTIFNETALKWELIRGDDGTVGDSLTL 600



to top

>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
 Frame = -3

Query: 430 GHVHNYERTCPLYQSQCVNADKTHYSGTM------NGTIFVVAGGGGSHLSSYTTAI--- 278
           GHVH YER+      +  N      +G        +  I++  G GG+     T  +   
Sbjct: 355 GHVHAYERS-----ERVSNIAYNIVNGLCEPISDESAPIYITIGDGGNSEGLLTDMMQPQ 409

Query: 277 PKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDG 176
           PK+S FR+  +G   L   N +   F + ++ DG
Sbjct: 410 PKYSAFREASFGHGLLEIKNRTHAYFSWNRNQDG 443



to top

>PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.2)|
           (Manganese(II) purple acid phosphatase)
          Length = 464

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
 Frame = -3

Query: 430 GHVHNYERTCPLYQSQCVNADKTHYSGTM------NGTIFVVAGGGGSH---LSSYTTAI 278
           GHVH YER+      +  N      +G        +  +++  G GG+     ++ T   
Sbjct: 349 GHVHAYERS-----ERVSNVAYNIVNGLCAPVNDKSAPVYITIGDGGTLEGLATNMTEPQ 403

Query: 277 PKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDG 176
           PK+S FR+  +G       N +   + + ++ DG
Sbjct: 404 PKYSAFREASFGHAIFDITNRTHAHYSWHRNQDG 437



to top

>RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein|
            homolog)
          Length = 2095

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
 Frame = -3

Query: 415  YERTCPLYQ--SQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYG 242
            + ++ PL Q  S  VN ++  + G    T      G     +   T    WS   + + G
Sbjct: 914  HRKSGPLCQNRSDVVNYNRNGFLGNNLHTTSSKGNGFLMESNKSKTKNDNWSGNTNQETG 973

Query: 241  FTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS*LISSGRH 62
             + +   N   L   + +S +G +YDS+         L  +HD+C  +       S+  H
Sbjct: 974  KSLVAKDNGEELNKHHCESQNGSLYDSY---------LVSLHDNCTLSQTTINEPSTKSH 1024

Query: 61   VNVMEGHPSNKIV 23
            +++ +  P  K+V
Sbjct: 1025 LSIEKSRPEVKLV 1037



to top

>Y2577_MYCTU (Q50644) Hypothetical protein Rv2577/MT2654|
          Length = 529

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 38/102 (37%)
 Frame = -3

Query: 430 GHVHNYERTCPLYQSQCVNA-------DKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPK 272
           GH H+YER+ PL  +   +         ++    +  GT+ +V GGGG+   +     P+
Sbjct: 384 GHEHHYERSHPLRGALGTDTRTPIPVDTRSDLIDSTRGTVHLVIGGGGTSKPTNALLFPQ 443

Query: 271 -----------------------------WSIFRDHD--YGF 239
                                        WS FRD D  YGF
Sbjct: 444 PRCQVITGVGDFDPAIRRKPSIFVLEDAPWSAFRDRDNPYGF 485



to top

>DSCAM_HUMAN (O60469) Down syndrome cell adhesion molecule precursor (CHD2)|
          Length = 2012

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 235 KLTAFNHSSLLFEYMKSSDGKVYDSF 158
           ++T  NH +L+ ++M  SDG  Y  F
Sbjct: 361 RITGINHENLIMDHMVKSDGGAYQCF 386



to top

>GUND_CLOTM (P04954) Endoglucanase D precursor (EC 3.2.1.4) (EGD)|
           (Endo-1,4-beta-glucanase) (Cellulase D)
          Length = 649

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
 Frame = -3

Query: 400 PLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTT----------AIPKWSIFRDH 251
           P Y  +C+NA K  Y    N    V A   G     Y T          A   W    D 
Sbjct: 318 PQYAEKCINAAKVSYEFLKNNPANVFANQSGFSTGEYATVSDADDRLWAAAEMWETLGDE 377

Query: 250 DY 245
           +Y
Sbjct: 378 EY 379



to top

>GBLP_DROME (O18640) Guanine nucleotide-binding protein beta subunit-like|
           protein (Receptor of activated protein kinase C homolog)
          Length = 318

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 271 WSIFRDHD--YGFTKLTAFNHSSLLFEYMKSSDG 176
           W + RD D  YG+ +   + HS  + + + SSDG
Sbjct: 43  WKLTRDEDTNYGYPQKRLYGHSHFISDVVLSSDG 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,454,716
Number of Sequences: 219361
Number of extensions: 844741
Number of successful extensions: 2406
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2401
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top