ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63f15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TUP12_SCHPO (Q9UUG8) Transcriptional repressor tup12 30 2.3
2UL84_HCMVA (P16727) 65 kDa early nonstructural protein (UL84 pro... 28 6.5
3UL84_HCMVT (P29839) 65 kDa early nonstructural protein (UL84 pro... 28 6.5

>TUP12_SCHPO (Q9UUG8) Transcriptional repressor tup12|
          Length = 586

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 141 WNQIESAPTSSPPLLIQDLHT*GHPCMIC 55
           W    + P   PP+ +Q LHT  H  +IC
Sbjct: 263 WTVTSNVPNKEPPISVQLLHTLEHTSVIC 291



to top

>UL84_HCMVA (P16727) 65 kDa early nonstructural protein (UL84 protein)|
          Length = 586

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 157 RPACNLEPNRVGTYVLAAVIDPRLT 83
           RPA +L P R G ++L +VID +LT
Sbjct: 197 RPAFSLFPARPGCHILRSVIDQQLT 221



to top

>UL84_HCMVT (P29839) 65 kDa early nonstructural protein (UL84 protein)|
          Length = 587

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 157 RPACNLEPNRVGTYVLAAVIDPRLT 83
           RPA +L P R G ++L +VID +LT
Sbjct: 198 RPAFSLFPARPGCHILRSVIDQQLT 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,145,302
Number of Sequences: 219361
Number of extensions: 482123
Number of successful extensions: 1079
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top