ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63f11 |
|---|---|
| Clone Library Name | barley_pub |
>QORL_ARATH (Q9ZUC1) Quinone oxidoreductase-like protein At1g23740, chloroplast| precursor (EC 1.-.-.-) Length = 386 Score = 201 bits (512), Expect = 1e-51 Identities = 100/143 (69%), Positives = 113/143 (79%) Frame = -2 Query: 589 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDDMPDKYDVVFDXXXXXXX 410 IQLAK VYGASKVAATAST KLEL++SLGAD+AIDYTK++ +D+PDKYDVVFD Sbjct: 244 IQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDKYDVVFDAIGMCDK 303 Query: 409 XXXXXXXXXXXXVLTGAVTPPGFRFVVTSDGSVLAKLNPYLESGKVKPVVDPKGPFPFSQ 230 LTGAVTPPGFRFVVTS+G VL KLNPY+ESGKVKPVVDPKGPFPFS+ Sbjct: 304 AVKVIKEGGKVVALTGAVTPPGFRFVVTSNGDVLKKLNPYIESGKVKPVVDPKGPFPFSR 363 Query: 229 VVEAFSYLETGRAAGKVVISPVP 161 V +AFSYLET A GKVV+ P+P Sbjct: 364 VADAFSYLETNHATGKVVVYPIP 386
>QOR_LEIAM (P42865) Probable quinone oxidoreductase (EC 1.6.5.5)| (NADPH:quinone reductase) (P36) Length = 340 Score = 49.7 bits (117), Expect = 7e-06 Identities = 47/178 (26%), Positives = 66/178 (37%), Gaps = 39/178 (21%) Frame = -2 Query: 589 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDD-----MPDKYDVVF--- 434 +QL K VYG + + +S K E LKS+G D I+Y +S D P DVV+ Sbjct: 163 VQLLKHVYGCTVIGTCSSEEKAEFLKSIGCDHVINYKTESLDGRLHELCPKGVDVVYECV 222 Query: 433 ------DXXXXXXXXXXXXXXXXXXXVLTGAVTP-------------------------P 347 D +G V P P Sbjct: 223 GGHTFNDAVRHVAVHARVVIIGSISSYKSGEVVPFSDPSGTSVTMLLLVKSASLNGFFLP 282 Query: 346 GFRFVVTSDGSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVI 173 F V+ +A L YL++G+VK VD K S V +A +L +G GKV++ Sbjct: 283 QFHDVIP---KYMANLLQYLKAGQVKLFVDKKVFHGLSSVADAVDHLYSGANYGKVLV 337
>RT4I1_BRARE (Q7T3C7) Reticulon-4-interacting protein 1 homolog, mitochondrial| precursor Length = 387 Score = 44.3 bits (103), Expect = 3e-04 Identities = 23/50 (46%), Positives = 34/50 (68%) Frame = -2 Query: 319 GSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVIS 170 GS L +++ +++GKV+PVV+ F F+QV EAF +E G A GK V+S Sbjct: 333 GSALDEVSEMVDAGKVRPVVEEV--FSFAQVPEAFQKVEQGHARGKTVVS 380
>RT4I1_MOUSE (Q924D0) Reticulon-4-interacting protein 1, mitochondrial precursor| (NOGO-interacting mitochondrial protein) Length = 396 Score = 42.7 bits (99), Expect = 9e-04 Identities = 21/54 (38%), Positives = 35/54 (64%) Frame = -2 Query: 325 SDGSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISPV 164 + G L ++ +++GK++PV++ FPFS+V EAF +E G A GK V++ V Sbjct: 345 ASGPYLDEIAELVDAGKIRPVIERT--FPFSEVPEAFLKVERGHARGKTVVNVV 396
>RT4I1_HUMAN (Q8WWV3) Reticulon-4-interacting protein 1, mitochondrial precursor| (NOGO-interacting mitochondrial protein) Length = 396 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/54 (40%), Positives = 34/54 (62%) Frame = -2 Query: 325 SDGSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISPV 164 + G L + +++GK++PV++ FPFS+V EAF +E G A GK VI+ V Sbjct: 345 ASGPCLDDIAELVDAGKIRPVIEQT--FPFSKVPEAFLKVERGHARGKTVINVV 396
>YNN4_YEAST (P53912) Hypothetical 41.2 kDa protein in FPR1-TOM22 intergenic| region Length = 376 Score = 36.2 bits (82), Expect = 0.082 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = -2 Query: 589 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDY-TKDSFDDMPDKYD 443 IQLAK++ G SK+ AS +LLK GAD DY D + + KY+ Sbjct: 192 IQLAKKLNGFSKIIVVASRKHEKLLKEYGADELFDYHDADVIEQIKKKYN 241
>QORH_ARATH (Q9SV68) Putative chloroplastic quinone-oxidoreductase homolog (EC| 1.-.-.-) Length = 329 Score = 35.4 bits (80), Expect = 0.14 Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 22/163 (13%) Frame = -2 Query: 589 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDDMPD----KYDVVFDXXX 422 +QLAK + V AT +E +KSLGAD +DY + KYD V Sbjct: 173 VQLAK--LANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCAN 230 Query: 421 XXXXXXXXXXXXXXXXVLTGAVTP-PGFRFVVTSDGSVLAK--LNPYL------------ 287 V+ +TP P + ++K L P L Sbjct: 231 GIPFSVFEPNLSENGKVID--ITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMV 288 Query: 286 ---ESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISP 167 + GKVK V+D K P S+ +A++ G A GK+++ P Sbjct: 289 NLVKEGKVKTVIDSK--HPLSKAEDAWAKSIDGHATGKIIVEP 329
>QORH_SPIOL (Q8H0M1) Chloroplastic quinone-oxidoreductase homolog (EC 1.-.-.-)| (ceQORH) Length = 329 Score = 34.7 bits (78), Expect = 0.24 Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 20/161 (12%) Frame = -2 Query: 589 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDDMPD----KYDVVFDXXX 422 +QLAK G + V AT L+ +K LGAD +DY + KYD V Sbjct: 173 VQLAK--LGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTSPSGKKYDYVVHGAS 230 Query: 421 XXXXXXXXXXXXXXXXVL------TGAVTPPGFRFVVTSDGSVLAKLNP----------Y 290 V+ T +T + + V L P Sbjct: 231 GIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNL 290 Query: 289 LESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISP 167 ++ K+K V+D K P S+ +A+S + G A GK++I P Sbjct: 291 VKEKKLKTVIDSK--HPLSKGEDAWSRIMGGHATGKIIIEP 329
>YL460_YEAST (P54007) Hypothetical 41.1 kDa protein ON CDC91-PAU4 intergenic| region Length = 376 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -2 Query: 589 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTK-DSFDDMPDKYD 443 IQLA ++ G +K+ AS +LLK GAD DY D + + KY+ Sbjct: 192 IQLANKLNGFTKIIVVASRKHEKLLKEYGADELFDYHDIDVVEQIKHKYN 241
>YCZ2_YEAST (P25608) 40.1 kDa protein in GIT1-PAU3 intergenic region| Length = 368 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -2 Query: 589 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTK-DSFDDMPDKYD 443 IQLA ++ G +K+ AS +LLK GAD DY D + + KY+ Sbjct: 184 IQLANKLNGFTKIIVVASRKHEKLLKEYGADQLFDYHDIDVVEQIKHKYN 233
>TOXD_COCCA (P54006) Protein TOXD| Length = 297 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Frame = -2 Query: 589 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDD-----MPDKYDVVFD 431 IQLAK +V T S EL+KSLGAD+ DY + + D +K +VFD Sbjct: 170 IQLAK--LSGYRVITTCSPHHFELMKSLGADLVFDYHEITSADHIRRCTQNKLKLVFD 225
>CND2_MOUSE (Q8C156) Condensin complex subunit 2 (Barren homolog protein 1)| (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog) Length = 731 Score = 32.3 bits (72), Expect = 1.2 Identities = 25/85 (29%), Positives = 36/85 (42%) Frame = -2 Query: 364 GAVTPPGFRFVVTSDGSVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAG 185 G TPP + DGS L E+ + K PK + + S + A G Sbjct: 179 GKDTPPQGEESHSGDGSTL-------ETERTKKPAKPKKKQSCKTIEQNLSNINVSEADG 231 Query: 184 KVVISPVP*DTAVNS*QPSTSGVFL 110 K + P+ TA + + ST+GVFL Sbjct: 232 KCAVDPMFQKTAASFDECSTTGVFL 256
>VAT1_HUMAN (Q99536) Synaptic vesicle membrane protein VAT-1 homolog (EC| 1.-.-.-) Length = 393 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -2 Query: 313 VLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISPVP 161 V+A+L G +KP +D +PF +V +A ++ + GKV++ P P Sbjct: 341 VVARLLALYNQGHIKPHID--SVWPFEKVADAMKQMQEKKNVGKVLLVPGP 389
>LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein-binding protein 1) (PTPRF-interacting protein-binding protein 1) (hSGT2) Length = 1011 Score = 32.0 bits (71), Expect = 1.6 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = +2 Query: 107 WQKHTTCAWLLAIYSGVSWNRRNDHFAGGSSCLEVGKRLHDLGEGERPLGVDHRLHLPGL 286 W K C WL+ G N A G + L+ ++ DL E+ LG+ H LH L Sbjct: 647 WTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQ--DL---EKELGIKHSLHRKKL 701 Query: 287 EVRVE 301 ++ ++ Sbjct: 702 QLALQ 706
>VAT1_MOUSE (Q62465) Synaptic vesicle membrane protein VAT-1 homolog (EC| 1.-.-.-) Length = 406 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = -2 Query: 316 SVLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVISPVP 161 SV+ +L G +KP +D +PF +V +A ++ + GKV++ P P Sbjct: 353 SVVTRLVALYNQGHIKPRID--SVWPFEKVADAMKQMQEKKNIGKVLLVPGP 402
>PBUX_BACSU (P42086) Xanthine permease| Length = 438 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +3 Query: 54 IFFCFVCTIQQIFCSVIRGKNTPLVLGC*LFTAVS 158 IF C V T+ Q++ + G P+VLGC FTAVS Sbjct: 49 IFMCGVATLLQVWSNRFFGIGLPVVLGC-TFTAVS 82
>AST1_YEAST (P35183) Protein AST1| Length = 429 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -2 Query: 292 YLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVIS 170 +L++G VK VVD + + EAFSY+ T RA GK++++ Sbjct: 387 FLKNGTVKCVVDKV--YDWKDHKEAFSYMATQRAQGKLIMN 425
>FAS_BOVIN (Q71SP7) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2513 Score = 31.6 bits (70), Expect = 2.0 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -2 Query: 304 KLNPYLESGKVKPVVDP--KGPFPFSQVVEAFSYLETGRAAGKVVI 173 +++ L++G K VV P + FP +Q +AF Y+ G+ GKVVI Sbjct: 1811 EVSTLLKAGIRKGVVQPLKRTVFPRTQAEDAFRYMAQGKHIGKVVI 1856
>YMN1_YEAST (Q03102) Hypothetical 40.0 kDa protein in COX14-COS3 intergenic| region Length = 365 Score = 30.4 bits (67), Expect = 4.5 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = -2 Query: 589 IQLAKQVYGASKVAATASTP-KLELLKSLGAD-VAIDYTKDSF 467 IQLA V+ ASKV A A P K+ ++S G + V +DY SF Sbjct: 183 IQLALNVFKASKVIAIAGGPEKVAFVESFGDNVVGVDYKDPSF 225
>WSC3_YEAST (Q12215) Cell wall integrity and stress response component 3| precursor Length = 556 Score = 30.4 bits (67), Expect = 4.5 Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 2/113 (1%) Frame = +3 Query: 222 STTWEKGKGPLGSTTGFTFPDSR*GLSFARTDPSEVTTNRNPGGVTAPVRXXXXXXXXXX 401 STT + STT T D + A T + TT+ + T+ Sbjct: 155 STTSSLSSAQISSTTRRTSTDMKSSEMIATTVSTTSTTSSSTSSTTSSTTSSTTSSTTSS 214 Query: 402 XXAFSPWPTASNTTSYL--SGMSSKLSLV*SMATSAPRLFRSSSFGVLAVAAT 554 + S T S+TTS S SS S S TS+ +S F V + +++ Sbjct: 215 TTSSSTSSTTSSTTSSTTSSTTSSTTSSTTSSTTSSTTSSTTSIFSVTSSSSS 267
>FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2504 Score = 30.4 bits (67), Expect = 4.5 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = -2 Query: 313 VLAKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYLETGRAAGKVVI 173 V A L + G VKP+ FP +QV +AF Y+ G+ GKV++ Sbjct: 1803 VAALLKAGIRDGVVKPLKCTV--FPKAQVEDAFRYMAQGKHIGKVLV 1847
>ADH1_CANAL (P43067) Alcohol dehydrogenase 1 (EC 1.1.1.1) (40 kDa allergen)| (Allergen Cand a 1) (Can a 1) (Can a I) Length = 350 Score = 29.6 bits (65), Expect = 7.7 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -2 Query: 589 IQLAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKD 473 +Q A+ + G VA K E +KSLGA+ +D+TKD Sbjct: 190 VQYARAM-GLRVVAIDGGDEKGEFVKSLGAEAYVDFTKD 227
>DHSO_MACFA (Q4R639) Sorbitol dehydrogenase (EC 1.1.1.14) (L-iditol| 2-dehydrogenase) Length = 356 Score = 29.6 bits (65), Expect = 7.7 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = -2 Query: 583 LAKQVYGASKVAATASTPKLELLKSLGADVAIDYTKDSFDDMPDKYD 443 +AK + A V S P+L K +GAD+ + +K+S ++ K + Sbjct: 190 VAKAMGAAQVVVTDLSAPRLSKAKEIGADLVLQISKESPQEIAGKVE 236
>SAMD6_HUMAN (Q68DC2) Sterile alpha motif domain-containing protein 6 (Ankyrin| repeat domain-containing protein 14) Length = 871 Score = 29.6 bits (65), Expect = 7.7 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -1 Query: 323 RRVRPGEAQPLPRVREGEAGGRPQGAFPLLPG 228 R + PG A+P R E EAG P GA PG Sbjct: 27 RLLEPGAAEPAERGAEPEAGAEPAGAEVAGPG 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,585,321 Number of Sequences: 219361 Number of extensions: 1861696 Number of successful extensions: 6737 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 6355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6720 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
