Clone Name | rbah63f11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_507580.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0011E04.125 mRNA Length = 1513 Score = 494 bits (249), Expect = e-136 Identities = 414/469 (88%) Strand = Plus / Minus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1346 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1287 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 1286 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1227 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 1226 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1167 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 1166 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 1107 Query: 396 accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 455 ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 1106 accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 1047 Query: 456 ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 515 |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || Sbjct: 1046 ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 987 Query: 516 aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 575 |||||||||||||| || ||||| || || ||||||||||| || |||||||| || ||| Sbjct: 986 aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 927 Query: 576 ttcgccagctggatgacaagggacccgactccaccggcgccgccgagga 624 || |||||||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 926 ttggccagctggatggcgagggagccgacgccgccggcgccgccgagga 878
>ref|XM_482105.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1392 Score = 494 bits (249), Expect = e-136 Identities = 414/469 (88%) Strand = Plus / Minus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1189 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1130 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 1129 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1070 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 1069 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1010 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 1009 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 950 Query: 396 accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 455 ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 949 accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 890 Query: 456 ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 515 |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || Sbjct: 889 ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 830 Query: 516 aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 575 |||||||||||||| || ||||| || || ||||||||||| || |||||||| || ||| Sbjct: 829 aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 770 Query: 576 ttcgccagctggatgacaagggacccgactccaccggcgccgccgagga 624 || |||||||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 769 ttggccagctggatggcgagggagccgacgccgccggcgccgccgagga 721
>ref|XM_507214.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0011E04.125 mRNA Length = 1510 Score = 494 bits (249), Expect = e-136 Identities = 414/469 (88%) Strand = Plus / Minus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1234 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1175 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 1174 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1115 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 1114 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1055 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 1054 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 995 Query: 396 accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 455 ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 994 accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 935 Query: 456 ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 515 |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || Sbjct: 934 ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 875 Query: 516 aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 575 |||||||||||||| || ||||| || || ||||||||||| || |||||||| || ||| Sbjct: 874 aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 815 Query: 576 ttcgccagctggatgacaagggacccgactccaccggcgccgccgagga 624 || |||||||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 814 ttggccagctggatggcgagggagccgacgccgccggcgccgccgagga 766
>dbj|AK109433.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C06, full insert sequence Length = 1503 Score = 494 bits (249), Expect = e-136 Identities = 414/469 (88%) Strand = Plus / Minus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1340 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1281 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 1280 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1221 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 1220 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1161 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 1160 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 1101 Query: 396 accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 455 ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 1100 accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 1041 Query: 456 ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 515 |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || Sbjct: 1040 ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 981 Query: 516 aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 575 |||||||||||||| || ||||| || || ||||||||||| || |||||||| || ||| Sbjct: 980 aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 921 Query: 576 ttcgccagctggatgacaagggacccgactccaccggcgccgccgagga 624 || |||||||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 920 ttggccagctggatggcgagggagccgacgccgccggcgccgccgagga 872
>dbj|AK112013.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C09, full insert sequence Length = 980 Score = 494 bits (249), Expect = e-136 Identities = 414/469 (88%) Strand = Plus / Minus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 682 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 623 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 622 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 563 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 562 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 503 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 502 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 443 Query: 396 accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 455 ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 442 accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 383 Query: 456 ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 515 |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || Sbjct: 382 ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 323 Query: 516 aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 575 |||||||||||||| || ||||| || || ||||||||||| || |||||||| || ||| Sbjct: 322 aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 263 Query: 576 ttcgccagctggatgacaagggacccgactccaccggcgccgccgagga 624 || |||||||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 262 ttggccagctggatggcgagggagccgacgccgccggcgccgccgagga 214
>dbj|AK104318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D02, full insert sequence Length = 1392 Score = 494 bits (249), Expect = e-136 Identities = 414/469 (88%) Strand = Plus / Minus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1189 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1130 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 1129 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1070 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 1069 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1010 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 1009 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 950 Query: 396 accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 455 ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 949 accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 890 Query: 456 ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 515 |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || Sbjct: 889 ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 830 Query: 516 aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 575 |||||||||||||| || ||||| || || ||||||||||| || |||||||| || ||| Sbjct: 829 aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 770 Query: 576 ttcgccagctggatgacaagggacccgactccaccggcgccgccgagga 624 || |||||||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 769 ttggccagctggatggcgagggagccgacgccgccggcgccgccgagga 721
>dbj|AK069608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019N13, full insert sequence Length = 1510 Score = 494 bits (249), Expect = e-136 Identities = 414/469 (88%) Strand = Plus / Minus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1234 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1175 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 1174 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1115 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 1114 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1055 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 1054 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 995 Query: 396 accaccttgaccgccttctcgccctggccgactgcgtcgaacacgacgtcgtacttgtcc 455 ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 994 accaccttgacggccttctcgccctggccgacggcgtcgaggacgacgtcgtacttgtcc 935 Query: 456 ggcatgtcgtcgaagctgtccttggtgtagtcgatggccacgtcggctcccaggcttttc 515 |||| ||| |||||| | |||||||||||||||||||| |||||||| || ||||| || Sbjct: 934 ggcaggtcctcgaagttctccttggtgtagtcgatggcgacgtcggcgccgaggctcttg 875 Query: 516 aggagctccagcttcggggtgctggctgtggccgccaccttcgatgcgccgtaaacttgc 575 |||||||||||||| || ||||| || || ||||||||||| || |||||||| || ||| Sbjct: 874 aggagctccagcttgggcgtgctcgccgtcgccgccaccttggacgcgccgtacacgtgc 815 Query: 576 ttcgccagctggatgacaagggacccgactccaccggcgccgccgagga 624 || |||||||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 814 ttggccagctggatggcgagggagccgacgccgccggcgccgccgagga 766
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 311 bits (157), Expect = 2e-81 Identities = 241/269 (89%) Strand = Plus / Plus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 17848737 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 17848796 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 17848797 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 17848856 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 17848857 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 17848916 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 17848917 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 17848976 Query: 396 accaccttgaccgccttctcgccctggcc 424 ||||||||||| ||||||||||||||||| Sbjct: 17848977 accaccttgacggccttctcgccctggcc 17849005 Score = 151 bits (76), Expect = 3e-33 Identities = 142/164 (86%) Strand = Plus / Plus Query: 423 ccgactgcgtcgaacacgacgtcgtacttgtccggcatgtcgtcgaagctgtccttggtg 482 ||||| ||||||| |||||||||||||||||||||| ||| |||||| | ||||||||| Sbjct: 17849108 ccgacggcgtcgaggacgacgtcgtacttgtccggcaggtcctcgaagttctccttggtg 17849167 Query: 483 tagtcgatggccacgtcggctcccaggcttttcaggagctccagcttcggggtgctggct 542 ||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| || Sbjct: 17849168 tagtcgatggcgacgtcggcgccgaggctcttgaggagctccagcttgggcgtgctcgcc 17849227 Query: 543 gtggccgccaccttcgatgcgccgtaaacttgcttcgccagctg 586 || ||||||||||| || |||||||| || ||||| |||||||| Sbjct: 17849228 gtcgccgccaccttggacgcgccgtacacgtgcttggccagctg 17849271 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 584 ctggatgacaagggacccgactccaccggcgccgccgagga 624 ||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 17849368 ctggatggcgagggagccgacgccgccggcgccgccgagga 17849408
>dbj|AP004675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0709D11 Length = 146856 Score = 311 bits (157), Expect = 2e-81 Identities = 241/269 (89%) Strand = Plus / Plus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 70243 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 70302 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 70303 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 70362 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 70363 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 70422 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 70423 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 70482 Query: 396 accaccttgaccgccttctcgccctggcc 424 ||||||||||| ||||||||||||||||| Sbjct: 70483 accaccttgacggccttctcgccctggcc 70511 Score = 151 bits (76), Expect = 3e-33 Identities = 142/164 (86%) Strand = Plus / Plus Query: 423 ccgactgcgtcgaacacgacgtcgtacttgtccggcatgtcgtcgaagctgtccttggtg 482 ||||| ||||||| |||||||||||||||||||||| ||| |||||| | ||||||||| Sbjct: 70614 ccgacggcgtcgaggacgacgtcgtacttgtccggcaggtcctcgaagttctccttggtg 70673 Query: 483 tagtcgatggccacgtcggctcccaggcttttcaggagctccagcttcggggtgctggct 542 ||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| || Sbjct: 70674 tagtcgatggcgacgtcggcgccgaggctcttgaggagctccagcttgggcgtgctcgcc 70733 Query: 543 gtggccgccaccttcgatgcgccgtaaacttgcttcgccagctg 586 || ||||||||||| || |||||||| || ||||| |||||||| Sbjct: 70734 gtcgccgccaccttggacgcgccgtacacgtgcttggccagctg 70777 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 584 ctggatgacaagggacccgactccaccggcgccgccgagga 624 ||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 70874 ctggatggcgagggagccgacgccgccggcgccgccgagga 70914
>dbj|AP005443.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0011E04 Length = 136767 Score = 311 bits (157), Expect = 2e-81 Identities = 241/269 (89%) Strand = Plus / Plus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 123131 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 123190 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 123191 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 123250 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 123251 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 123310 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 123311 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 123370 Query: 396 accaccttgaccgccttctcgccctggcc 424 ||||||||||| ||||||||||||||||| Sbjct: 123371 accaccttgacggccttctcgccctggcc 123399 Score = 151 bits (76), Expect = 3e-33 Identities = 142/164 (86%) Strand = Plus / Plus Query: 423 ccgactgcgtcgaacacgacgtcgtacttgtccggcatgtcgtcgaagctgtccttggtg 482 ||||| ||||||| |||||||||||||||||||||| ||| |||||| | ||||||||| Sbjct: 123502 ccgacggcgtcgaggacgacgtcgtacttgtccggcaggtcctcgaagttctccttggtg 123561 Query: 483 tagtcgatggccacgtcggctcccaggcttttcaggagctccagcttcggggtgctggct 542 ||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| || Sbjct: 123562 tagtcgatggcgacgtcggcgccgaggctcttgaggagctccagcttgggcgtgctcgcc 123621 Query: 543 gtggccgccaccttcgatgcgccgtaaacttgcttcgccagctg 586 || ||||||||||| || |||||||| || ||||| |||||||| Sbjct: 123622 gtcgccgccaccttggacgcgccgtacacgtgcttggccagctg 123665 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 584 ctggatgacaagggacccgactccaccggcgccgccgagga 624 ||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 123762 ctggatggcgagggagccgacgccgccggcgccgccgagga 123802
>dbj|AK119345.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-E02, full insert sequence Length = 2944 Score = 311 bits (157), Expect = 2e-81 Identities = 241/269 (89%) Strand = Plus / Plus Query: 156 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 215 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1197 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1256 Query: 216 aacgcctccacgacctgggagaaggggaaaggccccttggggtcgaccaccggcttcacc 275 || |||||||| ||||| ||||||| ||| |||||||||||||| |||| |||||||||| Sbjct: 1257 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1316 Query: 276 ttcccggactcgaggtaagggttgagcttcgccaggacggacccgtcggaggtgaccacg 335 ||||||||||| ||||| |||||||||||| ||| || ||||||||||||||||||||| Sbjct: 1317 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgaccacg 1376 Query: 336 aaccggaaccccggcggcgtgaccgcgccggtgaggaccaccacgctgccgccttccttc 395 |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 1377 aaccggaaccccggcggcacgacggcgccggtgagcaccaccacgctgcccccttccttc 1436 Query: 396 accaccttgaccgccttctcgccctggcc 424 ||||||||||| ||||||||||||||||| Sbjct: 1437 accaccttgacggccttctcgccctggcc 1465 Score = 151 bits (76), Expect = 3e-33 Identities = 142/164 (86%) Strand = Plus / Plus Query: 423 ccgactgcgtcgaacacgacgtcgtacttgtccggcatgtcgtcgaagctgtccttggtg 482 ||||| ||||||| |||||||||||||||||||||| ||| |||||| | ||||||||| Sbjct: 1568 ccgacggcgtcgaggacgacgtcgtacttgtccggcaggtcctcgaagttctccttggtg 1627 Query: 483 tagtcgatggccacgtcggctcccaggcttttcaggagctccagcttcggggtgctggct 542 ||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| || Sbjct: 1628 tagtcgatggcgacgtcggcgccgaggctcttgaggagctccagcttgggcgtgctcgcc 1687 Query: 543 gtggccgccaccttcgatgcgccgtaaacttgcttcgccagctg 586 || ||||||||||| || |||||||| || ||||| |||||||| Sbjct: 1688 gtcgccgccaccttggacgcgccgtacacgtgcttggccagctg 1731 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 584 ctggatgacaagggacccgactccaccggcgccgccgagga 624 ||||||| | ||||| ||||| || |||||||||||||||| Sbjct: 1828 ctggatggcgagggagccgacgccgccggcgccgccgagga 1868
>ref|XM_426551.1| PREDICTED: Gallus gallus similar to carbamoyl-phosphate synthetase III (LOC428994), mRNA Length = 6789 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 513 ttcaggagctccagcttcggggtgc 537 |||||||||||||||||||| |||| Sbjct: 944 ttcaggagctccagcttcggcgtgc 968
>gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, complete sequence Length = 206675 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 catcacatatttttctgcttt 68 ||||||||||||||||||||| Sbjct: 49629 catcacatatttttctgcttt 49609
>emb|CR954965.4| Mouse DNA sequence from clone RP23-19H11 on chromosome X, complete sequence Length = 176114 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 aaggggaaaggccccttgggg 257 ||||||||||||||||||||| Sbjct: 156903 aaggggaaaggccccttgggg 156923
>gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome 16, complete sequence Length = 178222 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 aaggggaaaggccccttgggg 257 ||||||||||||||||||||| Sbjct: 152094 aaggggaaaggccccttgggg 152074
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 479 ggtgtagtcgatggccacgtcggctccca 507 ||||||||||| |||||||||||| |||| Sbjct: 3014860 ggtgtagtcgacggccacgtcggcgccca 3014832
>emb|AL670675.7| Mouse DNA sequence from clone RP23-263N18 on chromosome X, complete sequence Length = 173987 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 aaggggaaaggccccttgggg 257 ||||||||||||||||||||| Sbjct: 121448 aaggggaaaggccccttgggg 121468
>emb|AL670256.6| Mouse DNA sequence from clone RP23-300H22 on chromosome 4, complete sequence Length = 237318 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 caacaaatattttgctcagta 101 ||||||||||||||||||||| Sbjct: 120555 caacaaatattttgctcagta 120535
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 gcgccggtgaggaccaccac 379 |||||||||||||||||||| Sbjct: 1929802 gcgccggtgaggaccaccac 1929821
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 ctccaccggcgccgccgagg 623 |||||||||||||||||||| Sbjct: 106918 ctccaccggcgccgccgagg 106937
>gb|AF538844.1| Homo sapiens matrix metalloproteinase 9 (gelatinase B, 92kD gelatinase, 92kD type IV collagenase) (MMP9) gene, complete cds Length = 11224 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ggccacgtcggctcccaggc 510 |||||||||||||||||||| Sbjct: 7290 ggccacgtcggctcccaggc 7271
>gb|AY658418.1| Synthetic construct Peudomonas aeruginosa clone FLH047217.01F PA4762 gene, partial cds Length = 561 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 606 ccaccggcgccgccgaggac 625 |||||||||||||||||||| Sbjct: 47 ccaccggcgccgccgaggac 66
>ref|NM_004994.2| Homo sapiens matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) (MMP9), mRNA Length = 2387 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ggccacgtcggctcccaggc 510 |||||||||||||||||||| Sbjct: 1852 ggccacgtcggctcccaggc 1833
>gb|DQ194553.1| Homo sapiens matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) (MMP9) gene, complete cds Length = 11651 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ggccacgtcggctcccaggc 510 |||||||||||||||||||| Sbjct: 7299 ggccacgtcggctcccaggc 7280
>ref|XM_446838.1| Candida glabrata CBS138, CAGL0H00891g partial mRNA Length = 4428 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 accatctctcataacatcac 53 |||||||||||||||||||| Sbjct: 375 accatctctcataacatcac 356
>gb|BC006093.1| Homo sapiens matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase), mRNA (cDNA clone MGC:12688 IMAGE:4054882), complete cds Length = 2373 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ggccacgtcggctcccaggc 510 |||||||||||||||||||| Sbjct: 1838 ggccacgtcggctcccaggc 1819
>gb|AC107743.14| Mus musculus chromosome 1, clone RP23-326A12, complete sequence Length = 221645 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ggggaaaggccccttggggt 258 |||||||||||||||||||| Sbjct: 57015 ggggaaaggccccttggggt 57034
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence Length = 1050361 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 accatctctcataacatcac 53 |||||||||||||||||||| Sbjct: 89939 accatctctcataacatcac 89958
>emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 6/11 Length = 346161 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 gccgccaccttcgatgcgcc 565 |||||||||||||||||||| Sbjct: 198482 gccgccaccttcgatgcgcc 198463
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 ccgccttctcgccctggccg 425 |||||||||||||||||||| Sbjct: 108881 ccgccttctcgccctggccg 108900
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 408 gccttctcgccctggccgactgcg 431 |||||||||||||||||| ||||| Sbjct: 3316095 gccttctcgccctggccggctgcg 3316118
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 ccggcatgtcgtcgaagctgtcct 477 ||||||||||||||| |||||||| Sbjct: 486057 ccggcatgtcgtcgatgctgtcct 486034
>gb|AC073485.3| Homo sapiens BAC clone RP11-798J16 from 2, complete sequence Length = 140811 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 atttttctgctttgtatgca 75 |||||||||||||||||||| Sbjct: 99456 atttttctgctttgtatgca 99437
>gb|AE004890.1| Pseudomonas aeruginosa PAO1, section 451 of 529 of the complete genome Length = 12326 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ccaccggcgccgccgaggac 625 |||||||||||||||||||| Sbjct: 590 ccaccggcgccgccgaggac 571
>gb|AE004543.1| Pseudomonas aeruginosa PAO1, section 104 of 529 of the complete genome Length = 10589 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 479 ggtgtagtcgatggccacgtcggc 502 |||||||||||| ||||||||||| Sbjct: 7973 ggtgtagtcgatcgccacgtcggc 7996
>gb|AY889934.1| Synthetic construct Homo sapiens clone FLH116913.01X matrix metalloproteinase 9 (MMP9) mRNA, complete cds Length = 2124 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ggccacgtcggctcccaggc 510 |||||||||||||||||||| Sbjct: 1833 ggccacgtcggctcccaggc 1814
>ref|NM_210926.1| Eremothecium gossypii AFR025Cp (AFR025C), mRNA Length = 1401 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 ccggcatgtcgtcgaagctgtcct 477 ||||||||||||||| |||||||| Sbjct: 575 ccggcatgtcgtcgatgctgtcct 598
>gb|AC139316.4| Mus musculus BAC clone RP24-500I24 from 3, complete sequence Length = 187000 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tttttctgctttgtatgcac 76 |||||||||||||||||||| Sbjct: 52360 tttttctgctttgtatgcac 52379
>emb|AL162458.10| Human DNA sequence from clone RP11-465L10 on chromosome 20, complete sequence Length = 150791 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ggccacgtcggctcccaggc 510 |||||||||||||||||||| Sbjct: 100622 ggccacgtcggctcccaggc 100603
>emb|AL663092.15| Mouse DNA sequence from clone RP23-91I20 on chromosome 2, complete sequence Length = 207554 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 533 ggtgctggctgtggccgccacctt 556 |||||||||||||||| ||||||| Sbjct: 171909 ggtgctggctgtggccaccacctt 171932
>gb|J05070.1|HUM4COLA Human type IV collagenase mRNA, complete cds Length = 2334 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ggccacgtcggctcccaggc 510 |||||||||||||||||||| Sbjct: 1852 ggccacgtcggctcccaggc 1833
>gb|M68353.1|HUMIVCOL11 Human type IV collagenase (CLG4B) gene, exon 11 Length = 171 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ggccacgtcggctcccaggc 510 |||||||||||||||||||| Sbjct: 93 ggccacgtcggctcccaggc 74 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,552,433 Number of Sequences: 3902068 Number of extensions: 4552433 Number of successful extensions: 103828 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103373 Number of HSP's gapped (non-prelim): 455 length of query: 629 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 606 effective length of database: 17,143,297,704 effective search space: 10388838408624 effective search space used: 10388838408624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)