ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DYSF_HUMAN (O75923) Dysferlin (Dystrophy-associated fer-1-like p... 39 0.010
2FA62A_MOUSE (Q3U7R1) Protein FAM62A (Membrane bound C2 domain-co... 36 0.084
3XTH9_ARATH (Q8LDW9) Xyloglucan endotransglucosylase/hydrolase pr... 35 0.11
4PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDb... 35 0.19
5PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDb... 35 0.19
6KPCB_HUMAN (P05771) Protein kinase C beta type (EC 2.7.11.13) (P... 33 0.54
7DYSF_MOUSE (Q9ESD7) Dysferlin (Dystrophy-associated fer-1-like p... 33 0.54
8KPCB_MOUSE (P68404) Protein kinase C beta type (EC 2.7.11.13) (P... 32 0.92
9KPCB_BOVIN (P05126) Protein kinase C beta type (EC 2.7.11.13) (P... 32 0.92
10KPCB_RAT (P68403) Protein kinase C beta type (EC 2.7.11.13) (PKC... 32 0.92
11KPCB_RABIT (P05772) Protein kinase C beta type (EC 2.7.11.13) (P... 32 0.92
12FA62A_PONPY (Q5RAG2) Protein FAM62A 31 2.1
13FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-co... 31 2.1
14PP16A_CUCMA (Q9ZT47) 16 kDa phloem protein 1 30 3.5

>DYSF_HUMAN (O75923) Dysferlin (Dystrophy-associated fer-1-like protein)|
           (Fer-1-like protein 1)
          Length = 2080

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPP--KGQKLHISCKNNSKFGKKSF-GKVTIQIDRVVML 366
           TK++    +P W+E F W     P  +G +LH+  K++   G+  F G+  + +  V+  
Sbjct: 35  TKVIKNSVNPVWNEGFEWDLKGIPLDQGSELHVVVKDHETMGRNRFLGEAKVPLREVLAT 94

Query: 365 GSVAGEYT--LLPESKSGPNRNLEIEFQWS 282
            S++  +   LL   K     +L ++  ++
Sbjct: 95  PSLSASFNAPLLDTKKQPTGASLVLQVSYT 124



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>FA62A_MOUSE (Q3U7R1) Protein FAM62A (Membrane bound C2 domain-containing|
           protein)
          Length = 1092

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
 Frame = -2

Query: 542 RLTKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFGKVTIQIDRVVMLG 363
           R +K   +  SP W+EAF + F   P+ Q+L +  K++S+    + G +T+ + R++   
Sbjct: 502 RESKATYSTNSPVWEEAFRF-FLQDPRSQELDVQVKDDSR--ALTLGALTLPLARLL--- 555

Query: 362 SVAGEYTL---LPESKSGPNRNL 303
             A E TL      S SGPN  L
Sbjct: 556 -TASELTLDQWFQLSSSGPNSRL 577



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>XTH9_ARATH (Q8LDW9) Xyloglucan endotransglucosylase/hydrolase protein 9|
           precursor (EC 2.4.1.207) (At-XTH9) (XTH-9)
          Length = 290

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
 Frame = -2

Query: 530 IVSTGES---PEWDEAF--AWAFDS-PPKGQKLHISCKNNSKFGKKS-----FGKVTIQI 384
           +VS GE+    ++DE +  +WA D    +G+   +   N S  G +S     FGKV+IQI
Sbjct: 17  VVSCGEAVSGAKFDELYRSSWAMDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQI 76

Query: 383 DRVVMLGSVAGEYTLLPESKSGPNRNLEIEFQW 285
             V   G  AG  T    S  GPN N E +F++
Sbjct: 77  KLVE--GDSAGTVTAFYMSSDGPNHN-EFDFEF 106



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>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta|
           1) (PLDbeta)
          Length = 967

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFGKVTIQIDRVVMLGSV 357
           T ++S  E+P W + F           ++H   K++   G +  G VTI ++++     +
Sbjct: 215 TYVMSNSENPVWMQHFY--VPVAHHAAEVHFVVKDSDVVGSQLIGLVTIPVEQIYSGAKI 272

Query: 356 AGEYTLLPES----KSGPNRNLEIEF 291
            G Y +L  +    K G N +L I++
Sbjct: 273 EGTYPILTSNGKPCKPGANLSLSIQY 298



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>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta|
           2) (PLDdelta1)
          Length = 915

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFGKVTIQIDRVVMLGSV 357
           T ++S  E+P W + F           ++H   K++   G +  G VTI ++++     +
Sbjct: 176 TYVISNSENPVWQQHFY--VPVAHHAAEVHFVVKDSDAVGSQLIGIVTIPVEQIYSGARI 233

Query: 356 AGEYTLLPES----KSGPNRNLEIEFQWSNK 276
            G Y++   +    K G   +L I++   NK
Sbjct: 234 EGTYSIRDSNGKPCKPGATLSLSIQYTSMNK 264



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>KPCB_HUMAN (P05771) Protein kinase C beta type (EC 2.7.11.13) (PKC-beta)|
           (PKC-B)
          Length = 670

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHIS------CKNNSKFGKKSFGKVTIQIDRV 375
           TK +    +PEW+E F +      K ++L +          N   G  SFG   +Q   V
Sbjct: 211 TKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKASV 270

Query: 374 ----VMLGSVAGEYTLLPESKSGPNRNLEI 297
                +L    GEY  +P    G   N E+
Sbjct: 271 DGWFKLLSQEEGEYFNVPVPPEGSEANEEL 300



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>DYSF_MOUSE (Q9ESD7) Dysferlin (Dystrophy-associated fer-1-like protein)|
           (Fer-1-like protein 1)
          Length = 2083

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPPKGQ--KLHISCKNNSKFGKKSF-GKVTIQIDRVVML 366
           TK++    +P W+E F W     P  Q  +L +  K++   G+  F G+  I +  V+  
Sbjct: 36  TKVIKNSVNPVWNEGFEWDLKGIPLDQSSELLVVVKDHETMGRNRFLGEAKIPLQEVLAT 95

Query: 365 GSVAGEYTL-LPESKSGP 315
            S++  +   L ++K  P
Sbjct: 96  PSLSASFNAPLLDAKQQP 113



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>KPCB_MOUSE (P68404) Protein kinase C beta type (EC 2.7.11.13) (PKC-beta)|
           (PKC-B)
          Length = 672

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHIS------CKNNSKFGKKSFGKVTIQIDRV 375
           TK +    +PEW+E F +      K ++L +          N   G  SFG   +Q   V
Sbjct: 211 TKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV 270

Query: 374 ----VMLGSVAGEYTLLPESKSGPNRNLEI 297
                +L    GEY  +P    G   N E+
Sbjct: 271 DGWFKLLSQEEGEYFNVPVPPEGSEGNEEL 300



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>KPCB_BOVIN (P05126) Protein kinase C beta type (EC 2.7.11.13) (PKC-beta)|
           (PKC-B)
          Length = 672

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHIS------CKNNSKFGKKSFGKVTIQIDRV 375
           TK +    +PEW+E F +      K ++L +          N   G  SFG   +Q   V
Sbjct: 211 TKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV 270

Query: 374 ----VMLGSVAGEYTLLPESKSGPNRNLEI 297
                +L    GEY  +P    G   N E+
Sbjct: 271 DGWFKLLSQEEGEYFNVPVPPEGSEGNEEL 300



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>KPCB_RAT (P68403) Protein kinase C beta type (EC 2.7.11.13) (PKC-beta)|
           (PKC-B)
          Length = 670

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHIS------CKNNSKFGKKSFGKVTIQIDRV 375
           TK +    +PEW+E F +      K ++L +          N   G  SFG   +Q   V
Sbjct: 211 TKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV 270

Query: 374 ----VMLGSVAGEYTLLPESKSGPNRNLEI 297
                +L    GEY  +P    G   N E+
Sbjct: 271 DGWFKLLSQEEGEYFNVPVPPEGSEGNEEL 300



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>KPCB_RABIT (P05772) Protein kinase C beta type (EC 2.7.11.13) (PKC-beta)|
           (PKC-B)
          Length = 670

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHIS------CKNNSKFGKKSFGKVTIQIDRV 375
           TK +    +PEW+E F +      K ++L +          N   G  SFG   +Q   V
Sbjct: 211 TKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV 270

Query: 374 ----VMLGSVAGEYTLLPESKSGPNRNLEI 297
                +L    GEY  +P    G   N E+
Sbjct: 271 DGWFKLLSQEEGEYFNVPVPPEGSEGNEEL 300



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>FA62A_PONPY (Q5RAG2) Protein FAM62A|
          Length = 1104

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFGKVTIQIDRVVMLGSV 357
           +K V +   P W+EAF + F   P+ Q+L +  K++S+    + G +T+ + R++     
Sbjct: 514 SKAVYSTNCPVWEEAFRF-FLQDPQSQELDVQVKDDSR--ALTLGALTLPLARLL----T 566

Query: 356 AGEYTL---LPESKSGPNRNL 303
           A E  L      S SGPN  L
Sbjct: 567 APELILDQWFQLSSSGPNSRL 587



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>FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-containing|
           protein)
          Length = 1104

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -2

Query: 536 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFGKVTIQIDRVVMLGSV 357
           +K V +   P W+EAF + F   P+ Q+L +  K++S+    + G +T+ + R++     
Sbjct: 514 SKAVYSTNCPVWEEAFRF-FLQDPQSQELDVQVKDDSR--ALTLGALTLPLARLL----T 566

Query: 356 AGEYTL---LPESKSGPNRNL 303
           A E  L      S SGPN  L
Sbjct: 567 APELILDQWFQLSSSGPNSRL 587



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>PP16A_CUCMA (Q9ZT47) 16 kDa phloem protein 1|
          Length = 149

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = -2

Query: 542 RLTKIV-STGESPEWDEAFAWAFDSPPKGQKLHISCK---NNSKFGKKSFGKVTIQIDRV 375
           R++K+  + G +P WDE F +  + P  G   HI  K   +++  G    G V I +  +
Sbjct: 38  RMSKVAKNAGPNPLWDEKFKFLAEYPGSGGDFHILFKVMDHDAIDGDDYIGDVKIDVKNL 97

Query: 374 VMLGSVAGEYTLLP 333
           +  G   G+  + P
Sbjct: 98  LAEGVRKGKSEMPP 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,194,410
Number of Sequences: 219361
Number of extensions: 1524355
Number of successful extensions: 3573
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3571
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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