>emb|AJ310426.1|HVU310426 Hordeum vulgare mRNA for cathepsin B (cathB gene)
          Length = 1277

 Score =  464 bits (234), Expect = e-128
 Identities = 243/247 (98%)
 Strand = Plus / Minus

                                                                        
Query: 50   ctgcttcattgttattaacgggcacatccatagctagtgcacagaatacatagtcctgga 109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 ctgcttcattgttattaacgggcacatccatagctagtgcacagaatacatagtcctgga 1190

                                                                        
Query: 110  accatcaatgctagtttgcccgcttaatttgacaggcaaatagctaattccagctgcatc 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 accatcaatgctagtttgcccgcttaatttgacaggcaaatagctaattccagctgcatc 1130

                                                                        
Query: 170  agaggacgaggcgctgctcaaacttcacattgcaaaggcgctaccggcgatgttnttcat 229
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1129 agaggacgaggcgctgctcaaacttcacattgcaaaggcgctaccggcgatgttcttcat 1070

                                                                        
Query: 230  cgagggcataccggctgtaacatcttnttcgatgccacattcattnttgccccttataat 289
            |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||
Sbjct: 1069 cgagggcataccggctgtaacatcttcttcgatgccacattcattcttgccccttatgat 1010

                   
Query: 290  cttgaag 296
            |||||||
Sbjct: 1009 cttgaag 1003

>emb|X66012.1|TACATHBA T.aestivum mRNA 1 for cathepsin B (2529)
          Length = 1065

 Score =  250 bits (126), Expect = 2e-63
 Identities = 208/235 (88%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                        
Query: 63   attaacgggcacatccatagctagtgcacagaatacatagtcctggaaccatcaatgcta 122
            |||||||| |||||  ||||||||||||||||||||| | |||||| |||||||||||||
Sbjct: 1050 attaacggacacattaatagctagtgcacagaatacagattcctggtaccatcaatgcta 991

                                                                        
Query: 123  gtttgcccgcttaat-ttgacaggcaaatagctaattccagctgcatcagaggacgaggc 181
             | |||||||||||  |||| ||||||||||||||||||| | |||||||||||  ||| 
Sbjct: 990  atctgcccgcttaaacttgaaaggcaaatagctaattccaacagcatcagaggagaaggg 931

                                                                        
Query: 182  gctgctcaaacttcacattgcaaaggcgctaccggcgatgttnttcatcgagggcatacc 241
            || |||||||||| | ||||| |||||||||||||||||||| ||  |||||||||||||
Sbjct: 930  gcagctcaaactttaaattgcgaaggcgctaccggcgatgttctttgtcgagggcatacc 871

                                                                   
Query: 242  ggctgtaacatcttnttcgatgccacattcattnttgccccttataatcttgaag 296
            ||| |||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct: 870  ggcagtaacatcttcttcgatgccacattcattcttgccccttatgatcttgaag 816

>emb|X66013.1|TACATHBG T.aestivum gene for cathepsin B (Al16)
          Length = 4792

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 229  tcgagggcataccggctgtaacatcttnttcgatgccacattcattnttgccccttataa 288
            |||||||||||||||| ||||||||   |||||||||||||||||| | ||||||||| |
Sbjct: 4315 tcgagggcataccggcagtaacatcgccttcgatgccacattcattctcgccccttatga 4256

                    
Query: 289  tcttgaag 296
            ||||||||
Sbjct: 4255 tcttgaag 4248

>gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0570A02,
              complete sequence
          Length = 146541

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                          
Query: 219    atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278
              ||||| ||| ||||||||||||| ||   |||||||| ||||||||||||||| ||  ||
Sbjct: 111792 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 111733

                                
Query: 279    ccccttataatcttgaag 296
              |||||||| |||||||||
Sbjct: 111732 ccccttatgatcttgaag 111715

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                            
Query: 219      atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278
                ||||| ||| ||||||||||||| ||   |||||||| ||||||||||||||| ||  ||
Sbjct: 14031715 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 14031656

                                  
Query: 279      ccccttataatcttgaag 296
                |||||||| |||||||||
Sbjct: 14031655 ccccttatgatcttgaag 14031638

>dbj|AK101093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024N03, full
            insert sequence
          Length = 1437

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 219  atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278
            ||||| ||| ||||||||||||| ||   |||||||| ||||||||||||||| ||  ||
Sbjct: 1220 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1161

                              
Query: 279  ccccttataatcttgaag 296
            |||||||| |||||||||
Sbjct: 1160 ccccttatgatcttgaag 1143

>dbj|AK100225.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047M19, full
            insert sequence
          Length = 1436

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 219  atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278
            ||||| ||| ||||||||||||| ||   |||||||| ||||||||||||||| ||  ||
Sbjct: 1218 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1159

                              
Query: 279  ccccttataatcttgaag 296
            |||||||| |||||||||
Sbjct: 1158 ccccttatgatcttgaag 1141

>dbj|AK068459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151C17, full
            insert sequence
          Length = 3464

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 219  atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278
            ||||| ||| ||||||||||||| ||   |||||||| ||||||||||||||| ||  ||
Sbjct: 1349 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1290

                              
Query: 279  ccccttataatcttgaag 296
            |||||||| |||||||||
Sbjct: 1289 ccccttatgatcttgaag 1272

>dbj|AK064820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E23, full
            insert sequence
          Length = 1369

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 219  atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278
            ||||| ||| ||||||||||||| ||   |||||||| ||||||||||||||| ||  ||
Sbjct: 1151 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1092

                              
Query: 279  ccccttataatcttgaag 296
            |||||||| |||||||||
Sbjct: 1091 ccccttatgatcttgaag 1074

>dbj|AK059697.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-C04, full
            insert sequence
          Length = 1565

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 219  atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278
            ||||| ||| ||||||||||||| ||   |||||||| ||||||||||||||| ||  ||
Sbjct: 1150 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1091

                              
Query: 279  ccccttataatcttgaag 296
            |||||||| |||||||||
Sbjct: 1090 ccccttatgatcttgaag 1073

>gb|AY916493.1| Oryza sativa (japonica cultivar-group) cathepsin B-like cysteine
            protease mRNA, complete cds
          Length = 1475

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 219  atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278
            ||||| ||| ||||||||||||| ||   |||||||| ||||||||||||||| ||  ||
Sbjct: 1172 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1113

                              
Query: 279  ccccttataatcttgaag 296
            |||||||| |||||||||
Sbjct: 1112 ccccttatgatcttgaag 1095

>gb|BT016464.1| Zea mays clone Contig297 mRNA sequence
          Length = 1136

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 258 tcgatgccacattcattnttgccccttataatcttgaag 296
           ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 820 tcgatgccacattcatttttgccccttatgatcttgaag 782

>gb|AC163649.3| Mus musculus BAC clone RP24-372B10 from chromosome 3, complete sequence
          Length = 154740

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    taataataactgtttaattgt 30
             |||||||||||||||||||||
Sbjct: 71548 taataataactgtttaattgt 71568

>gb|AC124344.6| Mus musculus BAC clone RP24-448A7 from 3, complete sequence
          Length = 219818

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     taataataactgtttaattgt 30
              |||||||||||||||||||||
Sbjct: 181951 taataataactgtttaattgt 181971

>emb|CR478286.10| Zebrafish DNA sequence from clone CH211-196B13 in linkage group 15,
              complete sequence
          Length = 188644

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     taactgtttaattgtagttt 35
              ||||||||||||||||||||
Sbjct: 118349 taactgtttaattgtagttt 118330

>emb|AL136532.22| Human DNA sequence from clone RP11-379F14 on chromosome 20 Contains the
             MRPS16P gene for mitochondrial ribosomal protein S16
             pseudogene, complete sequence
          Length = 94387

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     ctttaataataactgtttaa 26
             ||||||||||||||||||||
Sbjct: 45527 ctttaataataactgtttaa 45508

>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 171     gaggacgaggcgctgctcaa 190
               ||||||||||||||||||||
Sbjct: 3657278 gaggacgaggcgctgctcaa 3657297

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 211     taccggcgatgttnttcatcgag 233
               ||||||||||||| |||||||||
Sbjct: 1259023 taccggcgatgttgttcatcgag 1259045

>gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2, complete sequence
          Length = 230827

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      ctttaataataactgtttaa 26
              ||||||||||||||||||||
Sbjct: 184659 ctttaataataactgtttaa 184640

>emb|AL773560.9| Pig DNA sequence from clone XX-514B12, complete sequence
          Length = 107413

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 271   cattnttgccccttataatcttg 293
             |||| ||||||||||||||||||
Sbjct: 20910 cattcttgccccttataatcttg 20888


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,065,139
Number of Sequences: 3902068
Number of extensions: 2065139
Number of successful extensions: 34147
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34109
Number of HSP's gapped (non-prelim): 37
length of query: 296
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 274
effective length of database: 17,147,199,772
effective search space: 4698332737528
effective search space used: 4698332737528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)