Clone Name | rbah63f09 |
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Clone Library Name | barley_pub |
>emb|AJ310426.1|HVU310426 Hordeum vulgare mRNA for cathepsin B (cathB gene) Length = 1277 Score = 464 bits (234), Expect = e-128 Identities = 243/247 (98%) Strand = Plus / Minus Query: 50 ctgcttcattgttattaacgggcacatccatagctagtgcacagaatacatagtcctgga 109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1249 ctgcttcattgttattaacgggcacatccatagctagtgcacagaatacatagtcctgga 1190 Query: 110 accatcaatgctagtttgcccgcttaatttgacaggcaaatagctaattccagctgcatc 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1189 accatcaatgctagtttgcccgcttaatttgacaggcaaatagctaattccagctgcatc 1130 Query: 170 agaggacgaggcgctgctcaaacttcacattgcaaaggcgctaccggcgatgttnttcat 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1129 agaggacgaggcgctgctcaaacttcacattgcaaaggcgctaccggcgatgttcttcat 1070 Query: 230 cgagggcataccggctgtaacatcttnttcgatgccacattcattnttgccccttataat 289 |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| || Sbjct: 1069 cgagggcataccggctgtaacatcttcttcgatgccacattcattcttgccccttatgat 1010 Query: 290 cttgaag 296 ||||||| Sbjct: 1009 cttgaag 1003
>emb|X66012.1|TACATHBA T.aestivum mRNA 1 for cathepsin B (2529) Length = 1065 Score = 250 bits (126), Expect = 2e-63 Identities = 208/235 (88%), Gaps = 1/235 (0%) Strand = Plus / Minus Query: 63 attaacgggcacatccatagctagtgcacagaatacatagtcctggaaccatcaatgcta 122 |||||||| ||||| ||||||||||||||||||||| | |||||| ||||||||||||| Sbjct: 1050 attaacggacacattaatagctagtgcacagaatacagattcctggtaccatcaatgcta 991 Query: 123 gtttgcccgcttaat-ttgacaggcaaatagctaattccagctgcatcagaggacgaggc 181 | ||||||||||| |||| ||||||||||||||||||| | ||||||||||| ||| Sbjct: 990 atctgcccgcttaaacttgaaaggcaaatagctaattccaacagcatcagaggagaaggg 931 Query: 182 gctgctcaaacttcacattgcaaaggcgctaccggcgatgttnttcatcgagggcatacc 241 || |||||||||| | ||||| |||||||||||||||||||| || ||||||||||||| Sbjct: 930 gcagctcaaactttaaattgcgaaggcgctaccggcgatgttctttgtcgagggcatacc 871 Query: 242 ggctgtaacatcttnttcgatgccacattcattnttgccccttataatcttgaag 296 ||| |||||||||| |||||||||||||||||| ||||||||||| ||||||||| Sbjct: 870 ggcagtaacatcttcttcgatgccacattcattcttgccccttatgatcttgaag 816
>emb|X66013.1|TACATHBG T.aestivum gene for cathepsin B (Al16) Length = 4792 Score = 83.8 bits (42), Expect = 3e-13 Identities = 61/68 (89%) Strand = Plus / Minus Query: 229 tcgagggcataccggctgtaacatcttnttcgatgccacattcattnttgccccttataa 288 |||||||||||||||| |||||||| |||||||||||||||||| | ||||||||| | Sbjct: 4315 tcgagggcataccggcagtaacatcgccttcgatgccacattcattctcgccccttatga 4256 Query: 289 tcttgaag 296 |||||||| Sbjct: 4255 tcttgaag 4248
>gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0570A02, complete sequence Length = 146541 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/78 (85%) Strand = Plus / Minus Query: 219 atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278 ||||| ||| ||||||||||||| || |||||||| ||||||||||||||| || || Sbjct: 111792 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 111733 Query: 279 ccccttataatcttgaag 296 |||||||| ||||||||| Sbjct: 111732 ccccttatgatcttgaag 111715
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/78 (85%) Strand = Plus / Minus Query: 219 atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278 ||||| ||| ||||||||||||| || |||||||| ||||||||||||||| || || Sbjct: 14031715 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 14031656 Query: 279 ccccttataatcttgaag 296 |||||||| ||||||||| Sbjct: 14031655 ccccttatgatcttgaag 14031638
>dbj|AK101093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024N03, full insert sequence Length = 1437 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/78 (85%) Strand = Plus / Minus Query: 219 atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278 ||||| ||| ||||||||||||| || |||||||| ||||||||||||||| || || Sbjct: 1220 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1161 Query: 279 ccccttataatcttgaag 296 |||||||| ||||||||| Sbjct: 1160 ccccttatgatcttgaag 1143
>dbj|AK100225.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047M19, full insert sequence Length = 1436 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/78 (85%) Strand = Plus / Minus Query: 219 atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278 ||||| ||| ||||||||||||| || |||||||| ||||||||||||||| || || Sbjct: 1218 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1159 Query: 279 ccccttataatcttgaag 296 |||||||| ||||||||| Sbjct: 1158 ccccttatgatcttgaag 1141
>dbj|AK068459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151C17, full insert sequence Length = 3464 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/78 (85%) Strand = Plus / Minus Query: 219 atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278 ||||| ||| ||||||||||||| || |||||||| ||||||||||||||| || || Sbjct: 1349 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1290 Query: 279 ccccttataatcttgaag 296 |||||||| ||||||||| Sbjct: 1289 ccccttatgatcttgaag 1272
>dbj|AK064820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E23, full insert sequence Length = 1369 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/78 (85%) Strand = Plus / Minus Query: 219 atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278 ||||| ||| ||||||||||||| || |||||||| ||||||||||||||| || || Sbjct: 1151 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1092 Query: 279 ccccttataatcttgaag 296 |||||||| ||||||||| Sbjct: 1091 ccccttatgatcttgaag 1074
>dbj|AK059697.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-C04, full insert sequence Length = 1565 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/78 (85%) Strand = Plus / Minus Query: 219 atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278 ||||| ||| ||||||||||||| || |||||||| ||||||||||||||| || || Sbjct: 1150 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1091 Query: 279 ccccttataatcttgaag 296 |||||||| ||||||||| Sbjct: 1090 ccccttatgatcttgaag 1073
>gb|AY916493.1| Oryza sativa (japonica cultivar-group) cathepsin B-like cysteine protease mRNA, complete cds Length = 1475 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/78 (85%) Strand = Plus / Minus Query: 219 atgttnttcatcgagggcataccggctgtaacatcttnttcgatgccacattcattnttg 278 ||||| ||| ||||||||||||| || |||||||| ||||||||||||||| || || Sbjct: 1172 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1113 Query: 279 ccccttataatcttgaag 296 |||||||| ||||||||| Sbjct: 1112 ccccttatgatcttgaag 1095
>gb|BT016464.1| Zea mays clone Contig297 mRNA sequence Length = 1136 Score = 63.9 bits (32), Expect = 3e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 258 tcgatgccacattcattnttgccccttataatcttgaag 296 ||||||||||||||||| ||||||||||| ||||||||| Sbjct: 820 tcgatgccacattcatttttgccccttatgatcttgaag 782
>gb|AC163649.3| Mus musculus BAC clone RP24-372B10 from chromosome 3, complete sequence Length = 154740 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 taataataactgtttaattgt 30 ||||||||||||||||||||| Sbjct: 71548 taataataactgtttaattgt 71568
>gb|AC124344.6| Mus musculus BAC clone RP24-448A7 from 3, complete sequence Length = 219818 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 taataataactgtttaattgt 30 ||||||||||||||||||||| Sbjct: 181951 taataataactgtttaattgt 181971
>emb|CR478286.10| Zebrafish DNA sequence from clone CH211-196B13 in linkage group 15, complete sequence Length = 188644 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 taactgtttaattgtagttt 35 |||||||||||||||||||| Sbjct: 118349 taactgtttaattgtagttt 118330
>emb|AL136532.22| Human DNA sequence from clone RP11-379F14 on chromosome 20 Contains the MRPS16P gene for mitochondrial ribosomal protein S16 pseudogene, complete sequence Length = 94387 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ctttaataataactgtttaa 26 |||||||||||||||||||| Sbjct: 45527 ctttaataataactgtttaa 45508
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gaggacgaggcgctgctcaa 190 |||||||||||||||||||| Sbjct: 3657278 gaggacgaggcgctgctcaa 3657297
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 211 taccggcgatgttnttcatcgag 233 ||||||||||||| ||||||||| Sbjct: 1259023 taccggcgatgttgttcatcgag 1259045
>gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2, complete sequence Length = 230827 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ctttaataataactgtttaa 26 |||||||||||||||||||| Sbjct: 184659 ctttaataataactgtttaa 184640
>emb|AL773560.9| Pig DNA sequence from clone XX-514B12, complete sequence Length = 107413 Score = 40.1 bits (20), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 271 cattnttgccccttataatcttg 293 |||| |||||||||||||||||| Sbjct: 20910 cattcttgccccttataatcttg 20888 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,065,139 Number of Sequences: 3902068 Number of extensions: 2065139 Number of successful extensions: 34147 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34109 Number of HSP's gapped (non-prelim): 37 length of query: 296 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 274 effective length of database: 17,147,199,772 effective search space: 4698332737528 effective search space used: 4698332737528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)