ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCP3_MOUSE (Q9JKK0) Calcipressin-3 (Down syndrome candidate regi... 31 1.5
2CCP3_HUMAN (Q9UKA8) Calcipressin-3 (Down syndrome candidate regi... 31 1.5
3ZN592_MOUSE (Q8BHZ4) Zinc finger protein 592 (Zfp-592) 28 7.6
4FACD2_HUMAN (Q9BXW9) Fanconi anemia group D2 protein (Protein FA... 28 9.9

>CCP3_MOUSE (Q9JKK0) Calcipressin-3 (Down syndrome candidate region 1-like|
           protein 2) (Myocyte-enriched calcineurin-interacting
           protein 3) (MCIP3)
          Length = 239

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 379 LQDLPVVLGACCVLHNICEMRREELEPEVQFALFDDDTT 263
           L DLP  L AC V   + E++ ++   E  F L+DD  T
Sbjct: 42  LSDLPTSLFACSVHEAVFEVQEQKERFEALFTLYDDQVT 80



to top

>CCP3_HUMAN (Q9UKA8) Calcipressin-3 (Down syndrome candidate region 1-like|
           protein 2) (Myocyte-enriched calcineurin-interacting
           protein 3) (MCIP3)
          Length = 241

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 379 LQDLPVVLGACCVLHNICEMRREELEPEVQFALFDDDTT 263
           L DLP  L AC V   + E R ++   E  F ++DD  T
Sbjct: 42  LSDLPTSLFACSVHEAVFEAREQKERFEALFTIYDDQVT 80



to top

>ZN592_MOUSE (Q8BHZ4) Zinc finger protein 592 (Zfp-592)|
          Length = 1262

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 247 RSETAKQERDSIAHNLLHRGFAGT 176
           R E+ + E+D IA +LLH GF G+
Sbjct: 75  RQESFEAEKDHIAPSLLHNGFRGS 98



to top

>FACD2_HUMAN (Q9BXW9) Fanconi anemia group D2 protein (Protein FACD2)|
          Length = 1471

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -2

Query: 424 LKTRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRREELEPEVQ 290
           LK R   + K + ++L+DLPV++    +LH++  M   E+  E++
Sbjct: 260 LKVRQLVMDKLSSIRLEDLPVIIK--FILHSVTAMDTLEVISELR 302


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,900,429
Number of Sequences: 219361
Number of extensions: 1080227
Number of successful extensions: 2923
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2914
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top