>DAPF_STRCO (O69969) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)|
          Length = 289

 Score = 35.8 bits (81), Expect = 0.045
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 430 PPSHSPRGRVPTGRSMHPVSPASPRRASTRQHQRGT 323
           PPSH+P G  P G ++  V    PR  + R H+RG+
Sbjct: 177 PPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGS 212

>YMT6_YEAST (Q04215) Transposon Ty1 protein A|
          Length = 440

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = -1

Query: 335 PERHPYPYERQF------VYGAEAHHHPTMINGAPYTISPTHTPYYGNGYPVQY 192
           P+  PYP +R        + G   + HP+++   PY +SP + P        QY
Sbjct: 80  PQNGPYPQQRMMNTQQANISGWPVYGHPSLMPYPPYQMSPMYAPPGAQSQFTQY 133

>RELA_MYXXA (O52177) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP|
           3'-pyrophosphotransferase) (ppGpp synthetase I)
           ((P)ppGpp synthetase)
          Length = 757

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
 Frame = -1

Query: 395 GSLYAPRVTSFPEKSFYQATPERHP------YP------YERQFVYGAEAHHHPTMINGA 252
           G++  P V S+   SF   +PERHP      +P       ++ +VY A+ H      +G 
Sbjct: 3   GNVAPPLVQSYDCSSF-DDSPERHPPTVSQYHPDPDLDIIKKAYVYSAKVHQGQLRKSGE 61

Query: 251 PYTISP 234
           PY + P
Sbjct: 62  PYLVHP 67

>RFX2_HUMAN (P48378) DNA-binding protein RFX2|
          Length = 723

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -1

Query: 380 PRVTSFPEKSFYQATPERHPYPYERQFVYGAEAHHHPTMINGAPYTISPTHTPYYGNGYP 201
           PRV   P+    Q  P +H YP + Q+V G +A +    I  A YT +P    Y  +   
Sbjct: 52  PRVQQVPQ----QVQPVQHVYPAQVQYVEGGDAVYTNGAIRTA-YTYNPEPQMYAPSSTA 106

Query: 200 VQYQVP 183
             ++ P
Sbjct: 107 SYFEAP 112

>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)|
          Length = 434

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -1

Query: 335 PERHPYPYERQFVYGAEAHHHPTMINGAPYTISPTHTPYYGNGYPV 198
           P  +  PYER       +H  P  +   P+  SP H P Y    PV
Sbjct: 254 PPVYEPPYERSPPVHPPSHEKPPFVYPPPHEKSPMHEPPYEKAPPV 299

>PROL1_HUMAN (Q99935) Proline-rich protein 1 precursor (PRL1) (Basic|
           proline-rich lacrimal protein)
          Length = 201

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
 Frame = -3

Query: 360 REELLPGNTREAPIPLRKAVCVRR*SPPPPYDDKRCSLHHLTHPHAVLR*WLPGAVP--- 190
           R   LPG     P PL +   V   SPPPPYD +  S   L         ++PG VP   
Sbjct: 26  RRPYLPGQL--PPPPLYRPRWVPP-SPPPPYDSRLNSPLSLP--------FVPGRVPPSS 74

Query: 189 ----------GALYPLMGESYKVHGLFPNYP 127
                       L+PL  ES +   LFP YP
Sbjct: 75  FSRFSQAVILSQLFPL--ESIRQPRLFPGYP 103

>SOML_ICTPU (Q9I8J9) Somatolactin precursor (SL)|
          Length = 230

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 300 KLPFVRVWVPLWCCLVEALLGEAGDTGCIER-PVGTR 407
           K   ++ W+ +W C V  LLG   D  C +R P G+R
Sbjct: 3   KTKVLQAWMGIWLCAVNGLLG--SDQDCSDRDPTGSR 37

>MYO5A_CHICK (Q02440) Myosin-5A (Myosin Va) (Dilute myosin heavy chain,|
           non-muscle) (Myosin heavy chain p190) (Myosin-V)
          Length = 1829

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 430 PPSHSPRGRVPTGRSMHPVSPASPRRASTRQHQRGT 323
           P S +P GRVP  R+  PV PA  R   T +  + T
Sbjct: 602 PTSATPSGRVPLSRT--PVKPAKARPGQTSKEHKKT 635

>MIG1_KLULA (P50898) Regulatory protein MIG1|
          Length = 474

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 387 LCTPCHQLPREELLPGNTREAPIPL 313
           LCTP H  P E LLP   +  P+ L
Sbjct: 438 LCTPTHSPPPEGLLPSLNQNKPVQL 462

>SYC_SILPO (Q5LRJ6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 465

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -3

Query: 180 YPLMGESYKVHG-----LFPNYP*LLTFCCCCSCISHLAS 76
           Y L+GES+ +HG     +FP++   +   CC     H A+
Sbjct: 218 YELLGESFDIHGGGNDLMFPHHENEIAQSCCAHPEGHFAN 257

>LEU1_RHIME (Q9X7L2) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 558

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = -1

Query: 377 RVTSFPEKSFYQATPERHPYPYERQFVYGAEAHHHPTMINGAPYTISPTHTPYYGNGYPV 198
           R+    E S     PERHPY  E   VY A +  H   IN     I   + P        
Sbjct: 304 RIKEVYEYSNQMVIPERHPYVGE--LVYTAFSGSHQDAINKGMKAIKQANKP-------- 353

Query: 197 QYQVPYI 177
            ++VPY+
Sbjct: 354 TWEVPYL 360

>NEST_RAT (P21263) Nestin|
          Length = 1805

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
 Frame = -3

Query: 429 RQATVQEAACQRVA----------LCTPCHQLPRE-ELLPGNTREAPIPLR-KAVCVRR* 286
           R+ TVQEAAC R A          L T   +L RE E L     E    L  +A C  R 
Sbjct: 102 RERTVQEAACSRRALEAEKNARGWLSTQAAELERELEALRAAHEEERAHLNAQAACAPRR 161

Query: 285 SPPPPY 268
            P PP+
Sbjct: 162 PPAPPH 167

>YTY1_YEAST (P08405) Transposon Ty1-15 52 kDa hypothetical protein|
          Length = 440

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = -1

Query: 338 TPERHPYPYERQFVY------GAEAHHHPTMINGAPYTISPTHTP 222
           +P+  PYP +           G   + HP+MI   PY +SP + P
Sbjct: 79  SPQNGPYPQQCMMTQNQANPSGWSFYGHPSMIPYTPYQMSPMYFP 123

>YJZ8_YEAST (P47099) Transposon Ty1 protein A|
          Length = 440

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = -1

Query: 338 TPERHPYPYERQFVY------GAEAHHHPTMINGAPYTISPTHTP 222
           +P+  PYP +           G   + HP+MI   PY +SP + P
Sbjct: 79  SPQNGPYPQQCMMTQNQANPSGWSFYGHPSMIPYTPYQMSPMYFP 123

>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = -1

Query: 341 ATPERHPYPYERQFVYGAEAHHHPTMINGAPYTISPTHTPYYGNGYPVQYQVPYIH*WG 165
           A P  +  PY     Y  EAH +   ++  PY       P Y   Y   Y VPY   +G
Sbjct: 317 APPSGYSSPYSYHDGYEGEAHPYGYYLD--PYAPYDAPYPPYDLPYHTPYDVPYFDPYG 373

>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor|
           (ECM3 homolog) (NV domain-containing protein 1)
          Length = 3160

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
 Frame = -1

Query: 395 GSLYAPRVTSFPE------KSFYQATPERHPYPYERQFVYGAEAHHHPTMINGAPYTISP 234
           GS Y   VT + +      K FY+ +    P P   QF++  + +H P   +G    +  
Sbjct: 622 GSFYERTVTEWRQQDITEGKLFYRHSGPHSPGPVMDQFMFRVQDNHDPPNQSGIQRFVIR 681

Query: 233 TH-----TPYYGNGYPVQYQV 186
            H      P  G+G P++  V
Sbjct: 682 IHPVDRLPPELGSGCPLRMVV 702

>YJZ9_YEAST (P47100) Transposon Ty1 protein B|
          Length = 1755

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = -1

Query: 338 TPERHPYPYERQFVY------GAEAHHHPTMINGAPYTISPTHTP 222
           +P+  PYP +           G   + HP+MI   PY +SP + P
Sbjct: 79  SPQNGPYPQQCMMTQNQANPSGWSFYGHPSMIPYTPYQMSPMYFP 123

>TRX_DROVI (Q24742) Protein trithorax|
          Length = 3828

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 363  PREELLPGNTREAPIPLRKAVCVRR*SPPPPYDD 262
            P   +LP   R+ P PL   V V+  +PP P ++
Sbjct: 3140 PTNRVLPMQQRQEPTPLSNDVVVQSPTPPKPIEE 3173

>PDC6I_XENLA (Q9W6C5) Programmed cell death 6-interacting protein (Signal|
           transduction protein Xp95)
          Length = 867

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 272 PTMINGAPYTISPTHTPYYGNGYPVQYQVPYIH 174
           P+   G PY   P +  YYG   PV Y  PY++
Sbjct: 799 PSQAQGPPYPSYPGYPGYYGMPMPVGYN-PYMY 830

>FREM2_HUMAN (Q5SZK8) FRAS1-related extracellular matrix protein 2 precursor|
           (ECM3 homolog)
          Length = 3169

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
 Frame = -1

Query: 404 RANGSLYAPRVTSFPEKS------FYQATPERHPYPYERQFVYGAEAHHHPTMINGAPYT 243
           R  G+ Y   VT + ++       FY+ +    P P   QF +  + +H P   +G    
Sbjct: 630 RKEGAFYERTVTEWQQQDITEGRLFYRHSGPHSPGPVTDQFTFRVQDNHDPPNQSGLQRF 689

Query: 242 ISPTH-----TPYYGNGYPVQYQV 186
           +   H      P  G+G P++  V
Sbjct: 690 VIRIHPVDRLPPELGSGCPLRMVV 713


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,508,509
Number of Sequences: 219361
Number of extensions: 1355258
Number of successful extensions: 3995
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3973
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)