Clone Name | rbah63f03 |
---|---|
Clone Library Name | barley_pub |
>DAPF_STRCO (O69969) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)| Length = 289 Score = 35.8 bits (81), Expect = 0.045 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 430 PPSHSPRGRVPTGRSMHPVSPASPRRASTRQHQRGT 323 PPSH+P G P G ++ V PR + R H+RG+ Sbjct: 177 PPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGS 212
>YMT6_YEAST (Q04215) Transposon Ty1 protein A| Length = 440 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = -1 Query: 335 PERHPYPYERQF------VYGAEAHHHPTMINGAPYTISPTHTPYYGNGYPVQY 192 P+ PYP +R + G + HP+++ PY +SP + P QY Sbjct: 80 PQNGPYPQQRMMNTQQANISGWPVYGHPSLMPYPPYQMSPMYAPPGAQSQFTQY 133
>RELA_MYXXA (O52177) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 757 Score = 30.4 bits (67), Expect = 1.9 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 12/66 (18%) Frame = -1 Query: 395 GSLYAPRVTSFPEKSFYQATPERHP------YP------YERQFVYGAEAHHHPTMINGA 252 G++ P V S+ SF +PERHP +P ++ +VY A+ H +G Sbjct: 3 GNVAPPLVQSYDCSSF-DDSPERHPPTVSQYHPDPDLDIIKKAYVYSAKVHQGQLRKSGE 61 Query: 251 PYTISP 234 PY + P Sbjct: 62 PYLVHP 67
>RFX2_HUMAN (P48378) DNA-binding protein RFX2| Length = 723 Score = 30.0 bits (66), Expect = 2.5 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = -1 Query: 380 PRVTSFPEKSFYQATPERHPYPYERQFVYGAEAHHHPTMINGAPYTISPTHTPYYGNGYP 201 PRV P+ Q P +H YP + Q+V G +A + I A YT +P Y + Sbjct: 52 PRVQQVPQ----QVQPVQHVYPAQVQYVEGGDAVYTNGAIRTA-YTYNPEPQMYAPSSTA 106 Query: 200 VQYQVP 183 ++ P Sbjct: 107 SYFEAP 112
>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)| Length = 434 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/46 (32%), Positives = 19/46 (41%) Frame = -1 Query: 335 PERHPYPYERQFVYGAEAHHHPTMINGAPYTISPTHTPYYGNGYPV 198 P + PYER +H P + P+ SP H P Y PV Sbjct: 254 PPVYEPPYERSPPVHPPSHEKPPFVYPPPHEKSPMHEPPYEKAPPV 299
>PROL1_HUMAN (Q99935) Proline-rich protein 1 precursor (PRL1) (Basic| proline-rich lacrimal protein) Length = 201 Score = 29.6 bits (65), Expect = 3.2 Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 13/91 (14%) Frame = -3 Query: 360 REELLPGNTREAPIPLRKAVCVRR*SPPPPYDDKRCSLHHLTHPHAVLR*WLPGAVP--- 190 R LPG P PL + V SPPPPYD + S L ++PG VP Sbjct: 26 RRPYLPGQL--PPPPLYRPRWVPP-SPPPPYDSRLNSPLSLP--------FVPGRVPPSS 74 Query: 189 ----------GALYPLMGESYKVHGLFPNYP 127 L+PL ES + LFP YP Sbjct: 75 FSRFSQAVILSQLFPL--ESIRQPRLFPGYP 103
>SOML_ICTPU (Q9I8J9) Somatolactin precursor (SL)| Length = 230 Score = 29.3 bits (64), Expect = 4.2 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +3 Query: 300 KLPFVRVWVPLWCCLVEALLGEAGDTGCIER-PVGTR 407 K ++ W+ +W C V LLG D C +R P G+R Sbjct: 3 KTKVLQAWMGIWLCAVNGLLG--SDQDCSDRDPTGSR 37
>MYO5A_CHICK (Q02440) Myosin-5A (Myosin Va) (Dilute myosin heavy chain,| non-muscle) (Myosin heavy chain p190) (Myosin-V) Length = 1829 Score = 28.9 bits (63), Expect = 5.5 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -2 Query: 430 PPSHSPRGRVPTGRSMHPVSPASPRRASTRQHQRGT 323 P S +P GRVP R+ PV PA R T + + T Sbjct: 602 PTSATPSGRVPLSRT--PVKPAKARPGQTSKEHKKT 635
>MIG1_KLULA (P50898) Regulatory protein MIG1| Length = 474 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 387 LCTPCHQLPREELLPGNTREAPIPL 313 LCTP H P E LLP + P+ L Sbjct: 438 LCTPTHSPPPEGLLPSLNQNKPVQL 462
>SYC_SILPO (Q5LRJ6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 465 Score = 28.5 bits (62), Expect = 7.2 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Frame = -3 Query: 180 YPLMGESYKVHG-----LFPNYP*LLTFCCCCSCISHLAS 76 Y L+GES+ +HG +FP++ + CC H A+ Sbjct: 218 YELLGESFDIHGGGNDLMFPHHENEIAQSCCAHPEGHFAN 257
>LEU1_RHIME (Q9X7L2) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 558 Score = 28.5 bits (62), Expect = 7.2 Identities = 21/67 (31%), Positives = 27/67 (40%) Frame = -1 Query: 377 RVTSFPEKSFYQATPERHPYPYERQFVYGAEAHHHPTMINGAPYTISPTHTPYYGNGYPV 198 R+ E S PERHPY E VY A + H IN I + P Sbjct: 304 RIKEVYEYSNQMVIPERHPYVGE--LVYTAFSGSHQDAINKGMKAIKQANKP-------- 353 Query: 197 QYQVPYI 177 ++VPY+ Sbjct: 354 TWEVPYL 360
>NEST_RAT (P21263) Nestin| Length = 1805 Score = 28.5 bits (62), Expect = 7.2 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 12/66 (18%) Frame = -3 Query: 429 RQATVQEAACQRVA----------LCTPCHQLPRE-ELLPGNTREAPIPLR-KAVCVRR* 286 R+ TVQEAAC R A L T +L RE E L E L +A C R Sbjct: 102 RERTVQEAACSRRALEAEKNARGWLSTQAAELERELEALRAAHEEERAHLNAQAACAPRR 161 Query: 285 SPPPPY 268 P PP+ Sbjct: 162 PPAPPH 167
>YTY1_YEAST (P08405) Transposon Ty1-15 52 kDa hypothetical protein| Length = 440 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Frame = -1 Query: 338 TPERHPYPYERQFVY------GAEAHHHPTMINGAPYTISPTHTP 222 +P+ PYP + G + HP+MI PY +SP + P Sbjct: 79 SPQNGPYPQQCMMTQNQANPSGWSFYGHPSMIPYTPYQMSPMYFP 123
>YJZ8_YEAST (P47099) Transposon Ty1 protein A| Length = 440 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Frame = -1 Query: 338 TPERHPYPYERQFVY------GAEAHHHPTMINGAPYTISPTHTP 222 +P+ PYP + G + HP+MI PY +SP + P Sbjct: 79 SPQNGPYPQQCMMTQNQANPSGWSFYGHPSMIPYTPYQMSPMYFP 123
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/59 (30%), Positives = 23/59 (38%) Frame = -1 Query: 341 ATPERHPYPYERQFVYGAEAHHHPTMINGAPYTISPTHTPYYGNGYPVQYQVPYIH*WG 165 A P + PY Y EAH + ++ PY P Y Y Y VPY +G Sbjct: 317 APPSGYSSPYSYHDGYEGEAHPYGYYLD--PYAPYDAPYPPYDLPYHTPYDVPYFDPYG 373
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) (NV domain-containing protein 1) Length = 3160 Score = 28.1 bits (61), Expect = 9.4 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 11/81 (13%) Frame = -1 Query: 395 GSLYAPRVTSFPE------KSFYQATPERHPYPYERQFVYGAEAHHHPTMINGAPYTISP 234 GS Y VT + + K FY+ + P P QF++ + +H P +G + Sbjct: 622 GSFYERTVTEWRQQDITEGKLFYRHSGPHSPGPVMDQFMFRVQDNHDPPNQSGIQRFVIR 681 Query: 233 TH-----TPYYGNGYPVQYQV 186 H P G+G P++ V Sbjct: 682 IHPVDRLPPELGSGCPLRMVV 702
>YJZ9_YEAST (P47100) Transposon Ty1 protein B| Length = 1755 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Frame = -1 Query: 338 TPERHPYPYERQFVY------GAEAHHHPTMINGAPYTISPTHTP 222 +P+ PYP + G + HP+MI PY +SP + P Sbjct: 79 SPQNGPYPQQCMMTQNQANPSGWSFYGHPSMIPYTPYQMSPMYFP 123
>TRX_DROVI (Q24742) Protein trithorax| Length = 3828 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 363 PREELLPGNTREAPIPLRKAVCVRR*SPPPPYDD 262 P +LP R+ P PL V V+ +PP P ++ Sbjct: 3140 PTNRVLPMQQRQEPTPLSNDVVVQSPTPPKPIEE 3173
>PDC6I_XENLA (Q9W6C5) Programmed cell death 6-interacting protein (Signal| transduction protein Xp95) Length = 867 Score = 28.1 bits (61), Expect = 9.4 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -1 Query: 272 PTMINGAPYTISPTHTPYYGNGYPVQYQVPYIH 174 P+ G PY P + YYG PV Y PY++ Sbjct: 799 PSQAQGPPYPSYPGYPGYYGMPMPVGYN-PYMY 830
>FREM2_HUMAN (Q5SZK8) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) Length = 3169 Score = 28.1 bits (61), Expect = 9.4 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Frame = -1 Query: 404 RANGSLYAPRVTSFPEKS------FYQATPERHPYPYERQFVYGAEAHHHPTMINGAPYT 243 R G+ Y VT + ++ FY+ + P P QF + + +H P +G Sbjct: 630 RKEGAFYERTVTEWQQQDITEGRLFYRHSGPHSPGPVTDQFTFRVQDNHDPPNQSGLQRF 689 Query: 242 ISPTH-----TPYYGNGYPVQYQV 186 + H P G+G P++ V Sbjct: 690 VIRIHPVDRLPPELGSGCPLRMVV 713 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,508,509 Number of Sequences: 219361 Number of extensions: 1355258 Number of successful extensions: 3995 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3796 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3973 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)