Clone Name | rbah63f03 |
---|---|
Clone Library Name | barley_pub |
>gb|AY596574.1| Saccharum officinarum clone SCCCLR1072A04, complete sequence Length = 2198 Score = 77.8 bits (39), Expect = 3e-11 Identities = 141/167 (84%), Gaps = 11/167 (6%) Strand = Plus / Plus Query: 54 ccaactattttcagctaggcaaactagctaga-tgactgatacaactacaacaacag-ca 111 |||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||| | || Sbjct: 122 ccaactatttccagctaggcaaactagc-agagtaactgatacgactacaacaacgggca 180 Query: 112 gaaggttaaaagctagggatagttaggaaagagcccatgcactttgtagctctcccccat 171 | ||||||| ||||| |||||||||||||||| | ||||| | | | ||||| || Sbjct: 181 gcaggttaa--gctag--atagttaggaaagagcacctgcacctggctg-tctcc---at 232 Query: 172 tagtggatataaggcacctggtactgcaccgggtagccattaccgta 218 ||||||||||| || ||||||||||| || ||||||||||||||||| Sbjct: 233 tagtggatatacgggacctggtactgaactgggtagccattaccgta 279 Score = 42.1 bits (21), Expect = 1.5 Identities = 113/143 (79%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 286 tcagcgccgtacacaaactgcctttcgtaagg---gtatgggtgcctctctggtgttgcc 342 ||||| || |||||||||||||| |||||||| | | || ||||||||||| || | Sbjct: 344 tcagcaccatacacaaactgcctctcgtaaggattggagggatgcctctctgggtttact 403 Query: 343 tggtagaagctcttctcggggaagctggtgacacggggtgcatagagcgacccgttggca 402 ||||||||||||| || | |||| || ||||| ||||| || ||| || |||||| Sbjct: 404 gggtagaagctcttgtcagcaaagcctgtagcacggtgtgcaaaggccgatccattggca 463 Query: 403 cgcggcctcttggactgtggctt 425 || |||| ||||||||||||||| Sbjct: 464 cgaggccgcttggactgtggctt 486
>ref|XM_450264.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2179 Score = 73.8 bits (37), Expect = 4e-10 Identities = 124/153 (81%) Strand = Plus / Minus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 1854 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 1795 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 1794 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 1735 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || |||||| ||||||| ||||||||||| Sbjct: 1734 agcaccatacacatactgcctctcgtaagggta 1702 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 397 ttggcacgcggcctcttggactgtggctt 425 |||||||| |||||||| ||||||||||| Sbjct: 1625 ttggcacgaggcctcttagactgtggctt 1597
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 73.8 bits (37), Expect = 4e-10 Identities = 124/153 (81%) Strand = Plus / Plus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 3606541 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 3606600 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 3606601 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 3606660 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || |||||| ||||||| ||||||||||| Sbjct: 3606661 agcaccatacacatactgcctctcgtaagggta 3606693 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| | || Sbjct: 3616095 ccatcagtggatatatggtacctggtactgaacctgatagccattaccatagtatgttgt 3616154 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||| ||| |||||||| | ||||||| || ||||| || ||||| || Sbjct: 3616155 gtgggcaggtgacatgccatagggagctgagcttatcattgttgggtgatgatgggcctc 3616214 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || || ||| ||||||| ||||||||||| Sbjct: 3616215 agcaccatatacatactgcctctcgtaagggta 3616247 Score = 56.0 bits (28), Expect = 1e-04 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 56 aactattttcagctaggcaaactagctagatgactgatacaactacaaca-acagcagaa 114 ||||| ||||||||||||| |||||||| || |||||||||||||||| | || || | Sbjct: 3615992 aactaatttcagctaggcagtctagctagtggattgatacaactacaacacatagtagca 3616051 Query: 115 ggttaaaagcta 126 |||||||||||| Sbjct: 3616052 ggttaaaagcta 3616063 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 394 ccgttggcacgcggcctcttggactgtggctt 425 ||||||||||| |||||||| ||||||||||| Sbjct: 3616324 ccgttggcacgaggcctcttagactgtggctt 3616355 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 90 tgatacaactacaacaacagcagaa 114 |||||||| |||||||||||||||| Sbjct: 14480626 tgatacaagtacaacaacagcagaa 14480602 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 397 ttggcacgcggcctcttggactgtggctt 425 |||||||| |||||||| ||||||||||| Sbjct: 3606770 ttggcacgaggcctcttagactgtggctt 3606798
>dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0499G10 Length = 158375 Score = 73.8 bits (37), Expect = 4e-10 Identities = 124/153 (81%) Strand = Plus / Plus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 92316 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 92375 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 92376 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 92435 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || |||||| ||||||| ||||||||||| Sbjct: 92436 agcaccatacacatactgcctctcgtaagggta 92468 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| | || Sbjct: 101870 ccatcagtggatatatggtacctggtactgaacctgatagccattaccatagtatgttgt 101929 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||| ||| |||||||| | ||||||| || ||||| || ||||| || Sbjct: 101930 gtgggcaggtgacatgccatagggagctgagcttatcattgttgggtgatgatgggcctc 101989 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || || ||| ||||||| ||||||||||| Sbjct: 101990 agcaccatatacatactgcctctcgtaagggta 102022 Score = 56.0 bits (28), Expect = 1e-04 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 56 aactattttcagctaggcaaactagctagatgactgatacaactacaaca-acagcagaa 114 ||||| ||||||||||||| |||||||| || |||||||||||||||| | || || | Sbjct: 101767 aactaatttcagctaggcagtctagctagtggattgatacaactacaacacatagtagca 101826 Query: 115 ggttaaaagcta 126 |||||||||||| Sbjct: 101827 ggttaaaagcta 101838 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 394 ccgttggcacgcggcctcttggactgtggctt 425 ||||||||||| |||||||| ||||||||||| Sbjct: 102099 ccgttggcacgaggcctcttagactgtggctt 102130 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 397 ttggcacgcggcctcttggactgtggctt 425 |||||||| |||||||| ||||||||||| Sbjct: 92545 ttggcacgaggcctcttagactgtggctt 92573
>dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1695_A02 Length = 156214 Score = 73.8 bits (37), Expect = 4e-10 Identities = 124/153 (81%) Strand = Plus / Plus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 14802 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 14861 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 14862 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 14921 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || |||||| ||||||| ||||||||||| Sbjct: 14922 agcaccatacacatactgcctctcgtaagggta 14954 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| | || Sbjct: 24356 ccatcagtggatatatggtacctggtactgaacctgatagccattaccatagtatgttgt 24415 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||| ||| |||||||| | ||||||| || ||||| || ||||| || Sbjct: 24416 gtgggcaggtgacatgccatagggagctgagcttatcattgttgggtgatgatgggcctc 24475 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || || ||| ||||||| ||||||||||| Sbjct: 24476 agcaccatatacatactgcctctcgtaagggta 24508 Score = 56.0 bits (28), Expect = 1e-04 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 56 aactattttcagctaggcaaactagctagatgactgatacaactacaaca-acagcagaa 114 ||||| ||||||||||||| |||||||| || |||||||||||||||| | || || | Sbjct: 24253 aactaatttcagctaggcagtctagctagtggattgatacaactacaacacatagtagca 24312 Query: 115 ggttaaaagcta 126 |||||||||||| Sbjct: 24313 ggttaaaagcta 24324 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 394 ccgttggcacgcggcctcttggactgtggctt 425 ||||||||||| |||||||| ||||||||||| Sbjct: 24585 ccgttggcacgaggcctcttagactgtggctt 24616 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 397 ttggcacgcggcctcttggactgtggctt 425 |||||||| |||||||| ||||||||||| Sbjct: 15031 ttggcacgaggcctcttagactgtggctt 15059
>dbj|AK103826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147L19, full insert sequence Length = 2179 Score = 73.8 bits (37), Expect = 4e-10 Identities = 124/153 (81%) Strand = Plus / Minus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 1854 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 1795 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 1794 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 1735 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || |||||| ||||||| ||||||||||| Sbjct: 1734 agcaccatacacatactgcctctcgtaagggta 1702 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 397 ttggcacgcggcctcttggactgtggctt 425 |||||||| |||||||| ||||||||||| Sbjct: 1625 ttggcacgaggcctcttagactgtggctt 1597
>dbj|AK060788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D08, full insert sequence Length = 1325 Score = 73.8 bits (37), Expect = 4e-10 Identities = 124/153 (81%) Strand = Plus / Minus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 1085 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 1026 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 1025 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 966 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || |||||| ||||||| ||||||||||| Sbjct: 965 agcaccatacacatactgcctctcgtaagggta 933 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 397 ttggcacgcggcctcttggactgtggctt 425 |||||||| |||||||| ||||||||||| Sbjct: 856 ttggcacgaggcctcttagactgtggctt 828
>gb|AY109393.1| Zea mays CL6746_2 mRNA sequence Length = 2069 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgta 218 ||||||||||||||| || ||||||||||| || ||||||||||||||||| Sbjct: 1798 ccattagtggatatacgggacctggtactgaactgggtagccattaccgta 1748 Score = 58.0 bits (29), Expect = 2e-05 Identities = 115/143 (80%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 286 tcagcgccgtacacaaactgcctttcgtaagg---gtatgggtgcctctctggtgttgcc 342 |||||||| |||||||||||||| ||| |||| | |||| ||||||||||| ||||| Sbjct: 1683 tcagcgccatacacaaactgcctctcgcaaggattgaatggatgcctctctggggttgct 1624 Query: 343 tggtagaagctcttctcggggaagctggtgacacggggtgcatagagcgacccgttggca 402 |||||||||||| || | |||| || |||||| |||| || ||| || |||||| Sbjct: 1623 gagtagaagctcttgtcagcaaagcctgtagcacgggttgcaaaggccgatccattggca 1564 Query: 403 cgcggcctcttggactgtggctt 425 || |||||||||||||| ||||| Sbjct: 1563 cgaggcctcttggactgcggctt 1541 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 54 ccaactattttcagctaggcaaactagc 81 |||||||||| || |||||||||||||| Sbjct: 1905 ccaactatttccatctaggcaaactagc 1878
>ref|XM_450265.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2019 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Minus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| | || Sbjct: 1783 ccatcagtggatatatggtacctggtactgaacctgatagccattaccatagtatgttgt 1724 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||| ||| |||||||| | ||||||| || ||||| || ||||| || Sbjct: 1723 gtgggcaggtgacatgccatagggagctgagcttatcattgttgggtgatgatgggcctc 1664 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || || ||| ||||||| ||||||||||| Sbjct: 1663 agcaccatatacatactgcctctcgtaagggta 1631 Score = 56.0 bits (28), Expect = 1e-04 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 56 aactattttcagctaggcaaactagctagatgactgatacaactacaaca-acagcagaa 114 ||||| ||||||||||||| |||||||| || |||||||||||||||| | || || | Sbjct: 1886 aactaatttcagctaggcagtctagctagtggattgatacaactacaacacatagtagca 1827 Query: 115 ggttaaaagcta 126 |||||||||||| Sbjct: 1826 ggttaaaagcta 1815 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 394 ccgttggcacgcggcctcttggactgtggctt 425 ||||||||||| |||||||| ||||||||||| Sbjct: 1554 ccgttggcacgaggcctcttagactgtggctt 1523
>dbj|AK099919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116K21, full insert sequence Length = 2019 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Minus Query: 168 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 227 |||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| | || Sbjct: 1783 ccatcagtggatatatggtacctggtactgaacctgatagccattaccatagtatgttgt 1724 Query: 228 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 287 ||||| ||||| ||| |||||||| | ||||||| || ||||| || ||||| || Sbjct: 1723 gtgggcaggtgacatgccatagggagctgagcttatcattgttgggtgatgatgggcctc 1664 Query: 288 agcgccgtacacaaactgcctttcgtaagggta 320 ||| || || ||| ||||||| ||||||||||| Sbjct: 1663 agcaccatatacatactgcctctcgtaagggta 1631 Score = 56.0 bits (28), Expect = 1e-04 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 56 aactattttcagctaggcaaactagctagatgactgatacaactacaaca-acagcagaa 114 ||||| ||||||||||||| |||||||| || |||||||||||||||| | || || | Sbjct: 1886 aactaatttcagctaggcagtctagctagtggattgatacaactacaacacatagtagca 1827 Query: 115 ggttaaaagcta 126 |||||||||||| Sbjct: 1826 ggttaaaagcta 1815 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 394 ccgttggcacgcggcctcttggactgtggctt 425 ||||||||||| |||||||| ||||||||||| Sbjct: 1554 ccgttggcacgaggcctcttagactgtggctt 1523
>ref|XM_450263.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2132 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 260 ttatcatcgtagggtggtggtgggcttcagcgccgtacacaaactgcctttcgtaagggt 319 ||||||| || || ||||| ||||| ||||| || |||||| ||||||| |||||||||| Sbjct: 1738 ttatcattgtgggatggtgatgggcctcagcaccatacacatactgcctctcgtaagggt 1679 Query: 320 a 320 | Sbjct: 1678 a 1678 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 397 ttggcacgcggcctcttggactgtggctt 425 |||||||| |||||||| ||||||||||| Sbjct: 1601 ttggcacgaggcctcttagactgtggctt 1573
>dbj|AK107545.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A02, full insert sequence Length = 2131 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 260 ttatcatcgtagggtggtggtgggcttcagcgccgtacacaaactgcctttcgtaagggt 319 ||||||| || || ||||| ||||| ||||| || |||||| ||||||| |||||||||| Sbjct: 1737 ttatcattgtgggatggtgatgggcctcagcaccatacacatactgcctctcgtaagggt 1678 Query: 320 a 320 | Sbjct: 1677 a 1677 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 397 ttggcacgcggcctcttggactgtggctt 425 |||||||| |||||||| ||||||||||| Sbjct: 1600 ttggcacgaggcctcttagactgtggctt 1572
>emb|CR450800.9| Zebrafish DNA sequence from clone DKEY-83F4 in linkage group 8, complete sequence Length = 120875 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 actgatacaactacaacaaca 108 ||||||||||||||||||||| Sbjct: 92554 actgatacaactacaacaaca 92534 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 atgactgatacaactacaacaaca 108 ||||||||||| |||||||||||| Sbjct: 92701 atgactgatactactacaacaaca 92678 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 atgactgatacaactacaacaaca 108 ||||||||||| |||||||||||| Sbjct: 92641 atgactgatactactacaacaaca 92618
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 90 tgatacaactacaacaacagcagaa 114 |||||||| |||||||||||||||| Sbjct: 80191 tgatacaagtacaacaacagcagaa 80167
>ref|XM_705790.1| Candida albicans SC5314 putative transcription factor (CaO19.9381), mRNA Length = 2523 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tacaactacaacaacagcag 112 |||||||||||||||||||| Sbjct: 173 tacaactacaacaacagcag 192
>ref|XM_705781.1| Candida albicans SC5314 putative transcription factor (CaO19.1822), mRNA Length = 2532 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tacaactacaacaacagcag 112 |||||||||||||||||||| Sbjct: 173 tacaactacaacaacagcag 192
>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11, complete sequence Length = 198600 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 acaactacaacaacagcaga 113 |||||||||||||||||||| Sbjct: 31792 acaactacaacaacagcaga 31811
>ref|XM_808720.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506445.20) partial mRNA Length = 3042 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tacaactacaacaacagcag 112 |||||||||||||||||||| Sbjct: 1559 tacaactacaacaacagcag 1578
>ref|XM_815199.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508277.340) partial mRNA Length = 3054 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tacaactacaacaacagcag 112 |||||||||||||||||||| Sbjct: 1568 tacaactacaacaacagcag 1587
>gb|AC005559.2|AC005559 Homo sapiens chromosome 19, cosmid F18382 (LLNLF-140D2) and 3' overlapping restriction fragment, complete sequence Length = 38911 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ggcgtgtgggtgggtgagatggtg 246 ||||||||||||| |||||||||| Sbjct: 23400 ggcgtgtgggtggatgagatggtg 23377
>ref|XM_392567.2| PREDICTED: Apis mellifera similar to CG32663-PA (LOC409039), mRNA Length = 2914 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tgactgatacaactacaaca 105 |||||||||||||||||||| Sbjct: 205 tgactgatacaactacaaca 186
>gb|AC007256.5| Homo sapiens BAC clone RP11-575C6 from 2, complete sequence Length = 181150 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 aacaacagcagaaggttaaa 121 |||||||||||||||||||| Sbjct: 66006 aacaacagcagaaggttaaa 65987
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cctggtactgcaccgggtag 207 |||||||||||||||||||| Sbjct: 344918 cctggtactgcaccgggtag 344937
>emb|AL672247.8| Mouse DNA sequence from clone RP23-95I19 on chromosome X, complete sequence Length = 224241 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 agctcttctcggggaagctg 369 |||||||||||||||||||| Sbjct: 173686 agctcttctcggggaagctg 173667 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,904,052 Number of Sequences: 3902068 Number of extensions: 12904052 Number of successful extensions: 79215 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79051 Number of HSP's gapped (non-prelim): 144 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)