ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62p18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APLP_DROME (Q9V496) Apolipophorins precursor (Retinoid- and fatt... 32 1.9
2MTA_THECR (P52721) Metallothionein A (MT-A) 30 5.5
3POMT2_MOUSE (Q8BGQ4) Protein O-mannosyl-transferase 2 (EC 2.4.1.... 30 7.2
4MT_ZOAVI (P52728) Metallothionein (MT) 30 9.4

>APLP_DROME (Q9V496) Apolipophorins precursor (Retinoid- and fatty acid-binding|
            glycoprotein) [Contains: Apolipophorin-2 (Apolipophorin
            II) (ApoL2); Apolipophorin-1 (Apolipophorin I) (ApoL1)]
          Length = 3351

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = -1

Query: 369  ALRSRILLWARWVNAEIKFRTRPTHLYMFSGEWLLM-HLHMGVHVCVMCGVNFAVPLHQ* 193
            + RS IL      N ++ F  +  + ++F  ++ L  H+  G H+    G+NFA P +  
Sbjct: 2752 SFRSSILNCLLNENWDVVFNKKLLYSWIFFNDFELRGHVVDGKHIFTFDGLNFAYPGNCK 2811

Query: 192  RIILP*GMDNPESLVRTLVNVSIKSL 115
             I+    +DN  +++  L N  +KS+
Sbjct: 2812 YILAQDSVDNNFTIIGQLTNGKLKSI 2837



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>MTA_THECR (P52721) Metallothionein A (MT-A)|
          Length = 60

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 21/44 (47%), Positives = 25/44 (56%)
 Frame = -1

Query: 600 SQESTCLRCLRPSKKCIPDSLTKWKRS*CSICCPSGITCKCIAG 469
           S+  TC +C   S KC   S T  K+S C  CCPSG T KC +G
Sbjct: 7   SKTGTC-KC-GDSCKCTNCSCTTCKKS-CCPCCPSGCT-KCASG 46



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>POMT2_MOUSE (Q8BGQ4) Protein O-mannosyl-transferase 2 (EC 2.4.1.109)|
           (Dolichyl-phosphate-mannose--protein mannosyltransferase
           2)
          Length = 820

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +1

Query: 223 TTHNAYMHSHVQMHQQPLTRKHIQMSG 303
           TT N  +HSH   H+ PLTRKH Q++G
Sbjct: 489 TTRN--LHSHY--HEAPLTRKHYQVTG 511



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>MT_ZOAVI (P52728) Metallothionein (MT)|
          Length = 60

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -1

Query: 564 SKKCIPDSLTKWKRS*CSICCPSGITCKCIAG 469
           S KC   S T  K+S C  CCPSG T KC +G
Sbjct: 17  SCKCTNCSCTTCKKS-CCPCCPSGCT-KCASG 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,477,423
Number of Sequences: 219361
Number of extensions: 2200309
Number of successful extensions: 4992
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4991
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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