ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63e23 |
|---|---|
| Clone Library Name | barley_pub |
>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 324 Score = 85.9 bits (211), Expect = 2e-17 Identities = 40/42 (95%), Positives = 40/42 (95%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETWEQ 253 VNVSL NLLTYPFVKEGVTNGTLKLVGGHYD VSGKFETWEQ Sbjct: 283 VNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWEQ 324
>CAH2_ARATH (P42737) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) Length = 259 Score = 66.6 bits (161), Expect = 1e-11 Identities = 30/41 (73%), Positives = 33/41 (80%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETWE 256 VNVSL NLLTYPFV+EGV GTL L GG+YD V+G FE WE Sbjct: 208 VNVSLANLLTYPFVREGVVKGTLALKGGYYDFVNGSFELWE 248
>CAHX_FLABR (P46511) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 63.5 bits (153), Expect = 1e-10 Identities = 28/40 (70%), Positives = 32/40 (80%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETW 259 VNVSL NLLTYPFV++G+ N TL L GGHYD V+G FE W Sbjct: 279 VNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 318
>CAH1_FLALI (P46512) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase| 1) Length = 330 Score = 63.5 bits (153), Expect = 1e-10 Identities = 28/40 (70%), Positives = 32/40 (80%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETW 259 VNVSL NLLTYPFV++G+ N TL L GGHYD V+G FE W Sbjct: 279 VNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 318
>CAHX_FLAPR (P46281) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 329 Score = 63.5 bits (153), Expect = 1e-10 Identities = 28/40 (70%), Positives = 32/40 (80%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETW 259 VNVSL NLLTYPFV++G+ N TL L GGHYD V+G FE W Sbjct: 278 VNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 317
>CAHC_ARATH (P27140) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 347 Score = 62.8 bits (151), Expect = 2e-10 Identities = 28/40 (70%), Positives = 31/40 (77%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETW 259 VNVSL NLLTYPFV+EG+ GTL L GG+YD V G FE W Sbjct: 285 VNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKGAFELW 324
>CAHX_FLABI (P46510) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 62.8 bits (151), Expect = 2e-10 Identities = 28/40 (70%), Positives = 32/40 (80%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETW 259 VNVSL NLLTYPFV++G+ N TL L GGHYD V+G FE W Sbjct: 279 VNVSLGNLLTYPFVRDGLRNKTLALKGGHYDFVNGTFELW 318
>CAHC_TOBAC (P27141) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 321 Score = 61.6 bits (148), Expect = 4e-10 Identities = 28/40 (70%), Positives = 31/40 (77%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETW 259 VNVSL NLLTYPFV+EG+ TL L GGHYD V+G FE W Sbjct: 270 VNVSLGNLLTYPFVREGLVKKTLALKGGHYDFVNGGFELW 309
>CAHC_PEA (P17067) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) [Contains: Carbonic anhydrase, 27 kDa isoform; Carbonic anhydrase, 25 kDa isoform] Length = 328 Score = 60.5 bits (145), Expect = 1e-09 Identities = 27/40 (67%), Positives = 30/40 (75%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETW 259 VN SL NLLTYPFV+EG+ N TL L GG+YD V G FE W Sbjct: 277 VNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELW 316
>CAHC_SPIOL (P16016) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 319 Score = 58.9 bits (141), Expect = 3e-09 Identities = 26/40 (65%), Positives = 31/40 (77%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETW 259 VNVSL NLLTYPFV++G+ TL L GG+YD V+G FE W Sbjct: 268 VNVSLGNLLTYPFVRDGLVKKTLALQGGYYDFVNGSFELW 307
>CAH2_FLALI (P46513) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) (Fragment) Length = 190 Score = 55.5 bits (132), Expect = 3e-08 Identities = 24/40 (60%), Positives = 29/40 (72%) Frame = -3 Query: 378 VNVSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGKFETW 259 VNVSL NLLTYPFV++ + N L L G HYD V+G F+ W Sbjct: 139 VNVSLGNLLTYPFVRDALVNKKLSLKGAHYDFVNGAFDLW 178
>CYNT_HELPJ (Q9ZN54) Carbonic anhydrase (EC 4.2.1.1)| Length = 221 Score = 34.7 bits (78), Expect = 0.057 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -3 Query: 372 VSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGK 271 + L NLL+Y F++E V N LK+ G HY +G+ Sbjct: 161 LQLNNLLSYDFIQERVINNELKIFGWHYIIETGR 194
>ACCD_PICAB (O47039) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 319 Score = 34.3 bits (77), Expect = 0.075 Identities = 19/65 (29%), Positives = 33/65 (50%) Frame = +1 Query: 172 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDXVVVAADELEGSVGHTLLDERVG 351 AL+ + D+ L+YV + S TGG + F + GD ++ G ++D+ +G Sbjct: 220 ALYIPQKDNRLLYVSILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKIVIDQTLG 276 Query: 352 QEVXE 366 Q+V E Sbjct: 277 QKVIE 281
>ACCD_PINTH (P52769) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 321 Score = 33.9 bits (76), Expect = 0.098 Identities = 17/65 (26%), Positives = 33/65 (50%) Frame = +1 Query: 172 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDXVVVAADELEGSVGHTLLDERVG 351 AL+ H+ + L+Y+ + S TGG + F + GD ++ G ++++ +G Sbjct: 220 ALYIHQKEKKLLYISILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKRVIEQTLG 276 Query: 352 QEVXE 366 Q+V E Sbjct: 277 QKVIE 281
>CYNT_HELPY (O24855) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 221 Score = 31.6 bits (70), Expect = 0.49 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 372 VSLXNLLTYPFVKEGVTNGTLKLVGGHYDXVSGK 271 + L NLL+Y F++E + LK+ G HY +G+ Sbjct: 161 LQLNNLLSYDFIQEKASKNELKIFGWHYIIETGR 194
>ACCD_CHLVU (P56293) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 411 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +1 Query: 172 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDXVVVAADELEGSVGHTLLDERVG 351 ALH H++ L+Y+ + S TGG + F + GD + L G G ++++ + Sbjct: 192 ALHIHQNCAKLLYISVLTSPTTGG---VTASFAMLGDLLFAEPKALIGFAGRRVIEQTLQ 248 Query: 352 QEV 360 +++ Sbjct: 249 EQL 251
>PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 426 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 187 DVNAMPWECVPVIVQYWMPDGPM*ICHKQ 101 D A+PW +P I + PDGP+ I H + Sbjct: 154 DAPAVPWSTLPEIFRELSPDGPLTIFHPE 182
>ACCD_EPIVI (P30064) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 493 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/66 (25%), Positives = 33/66 (50%) Frame = +1 Query: 172 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDXVVVAADELEGSVGHTLLDERVG 351 AL ++S+ L+YV + S TGG + F + GD ++ + G ++++ + Sbjct: 392 ALFDYQSNKKLLYVSILTSPTTGG---VTASFGMLGDIIIAEPNSYIAFAGKRVIEQTLH 448 Query: 352 QEVXEG 369 + V EG Sbjct: 449 KIVPEG 454
>I18BP_MOUSE (Q9Z0M9) Interleukin-18-binding protein precursor (IL-18BP)| (Interferon gamma-inducing factor-binding protein) Length = 191 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -1 Query: 197 SSDRCECNAMGVRTRYCPVLDAGWPDVNLP*AIEPFFLHHFLTRNCTA 54 S D C + V T+ P LD WP+ +P L+ LT +CTA Sbjct: 41 SKDPCSSWSPAVPTKQYPALDVIWPEKEVP-------LNGTLTLSCTA 81
>LPQT_MYCTU (P96384) Putative lipoprotein lpqT precursor| Length = 226 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -3 Query: 306 LVGGHYDXVSGKFETWEQ*IFPTG*LRHIQTYIYQDIVRSM 184 ++ G YD + TW + +FPTG Q Y+ Q + S+ Sbjct: 163 MIQGSYDLHGRRLHTWNRIVFPTGAPPAKQRYLVQLTITSL 203
>RPOZ_VIBPA (Q87TB0) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 90 Score = 28.9 bits (63), Expect = 3.2 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +1 Query: 184 HRSDDILIYVRLYMSELTGGEDLLLPCFELAGDXVVVAADEL-EGSVGHTLLDERVGQEV 360 +R D +LI R TGG+D L+P E V+A E+ EG + +LD R QE Sbjct: 15 NRFDLVLIAARRARQMQTGGKDALVP--EENDKPTVIALREIEEGLITKEVLDARERQEQ 72 Query: 361 XE 366 E Sbjct: 73 QE 74
>ACCD_CUSRE (P31562) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 497 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/63 (23%), Positives = 31/63 (49%) Frame = +1 Query: 172 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDXVVVAADELEGSVGHTLLDERVG 351 AL+ ++S+ L+YV + S GG + F + GD ++V G ++++ + Sbjct: 379 ALYDYQSNKRLVYVSILTSPTAGG---VTASFGMLGDIIIVEPRAYVAFAGKRVIEQTLN 435 Query: 352 QEV 360 Q + Sbjct: 436 QTI 438
>KI2S1_HUMAN (Q14954) Killer cell immunoglobulin-like receptor 2DS1 precursor| (MHC class I NK cell receptor Eb6 ActI) (CD158h antigen) Length = 304 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = -3 Query: 336 KEGVTNGTLKLVGGHYDXVS 277 +EG+ N TL+L+G H+D VS Sbjct: 62 REGMFNDTLRLIGEHHDGVS 81
>RPOZ_VIBVY (Q7MPX0) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 90 Score = 28.5 bits (62), Expect = 4.1 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +1 Query: 184 HRSDDILIYVRLYMSELTGGEDLLLPCFELAGDXVVVAADEL-EGSVGHTLLDERVGQEV 360 +R D +LI R TGG+D L+P E V+A E+ EG + +LD R QE Sbjct: 15 NRFDLVLIAARRARQMQTGGKDSLVP--EENDKPTVIALREIEEGLITKEVLDARERQEQ 72 Query: 361 XE 366 E Sbjct: 73 QE 74
>RPOZ_VIBVU (Q8DDV5) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 90 Score = 28.5 bits (62), Expect = 4.1 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +1 Query: 184 HRSDDILIYVRLYMSELTGGEDLLLPCFELAGDXVVVAADEL-EGSVGHTLLDERVGQEV 360 +R D +LI R TGG+D L+P E V+A E+ EG + +LD R QE Sbjct: 15 NRFDLVLIAARRARQMQTGGKDSLVP--EENDKPTVIALREIEEGLITKEVLDARERQEQ 72 Query: 361 XE 366 E Sbjct: 73 QE 74
>KI2L1_HUMAN (P43626) Killer cell immunoglobulin-like receptor 2DL1 precursor| (MHC class I NK cell receptor) (Natural killer-associated transcript 1) (NKAT-1) (p58 natural killer cell receptor clones CL-42/47.11) (p58 NK receptor) (p58.1 MHC class-I-speci Length = 348 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = -3 Query: 336 KEGVTNGTLKLVGGHYDXVS 277 +EG+ N TL+L+G H+D VS Sbjct: 62 REGMFNDTLRLIGEHHDGVS 81
>SCRA_LIMPO (Q25390) Alpha-scruin| Length = 918 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Frame = -2 Query: 211 HISRYRPI--DVNAMPWECVPVIVQYWMPD 128 +IS YRP+ D + + E VPV + +W PD Sbjct: 478 YISGYRPLPPDQDDLSKELVPVSIPFWPPD 507
>IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 436 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -2 Query: 199 YRPIDVNAMPWECVPVIVQYWMPDG 125 YR + +N +PW+ P VQ W+ DG Sbjct: 101 YRAV-INNIPWDITPEGVQAWVEDG 124
>VL1_HPV05 (P06917) Major capsid protein L1| Length = 516 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +2 Query: 59 YNSSSENGEEKKVLLLMANSHRAIRHPVLDNNGYALP 169 +N + NG++ +V + N HR R + D N +ALP Sbjct: 51 FNVYNINGDKLEVPKVSGNQHRVFRLKLPDPNRFALP 87
>RDRP_CNV (P15187) Probable RNA-directed RNA polymerase (EC 2.7.7.48)| [Contains: Protein P33] Length = 817 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 10/85 (11%) Frame = +3 Query: 18 SFDXRRLNYASHSSTIPRQKMVKKKRFYCLWQIH-----IGPSGIQYWTITGTHSHGIAF 182 S + + + + + P K++ K WQ+H P G + G G Sbjct: 538 SVEALQFEHGFYRAMYPGNKLLSK---LLDWQLHNKGKGYVPDGTITYRKEGCRMSGDIN 594 Query: 183 TSIGRYLDICTFVY-----VGVNRW 242 TS+G YL +C +Y +G+N + Sbjct: 595 TSLGNYLLMCAMIYGYMRHLGINEY 619
>PUT4_YEAST (P15380) Proline-specific permease| Length = 627 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +3 Query: 132 GIQYWTITGTHSHGIAFTSIGRYLDICTFVYVG 230 G +YW G +H + S+G + DI T + G Sbjct: 287 GFRYWQHPGAFAHHLTGGSLGNFTDIYTGIIKG 319
>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%) Frame = +3 Query: 108 WQIHIGPS-GIQYWTITGTHSH 170 + I + P G+ YWT+ G HSH Sbjct: 4030 YAIAVNPKRGMMYWTVVGDHSH 4051
>SYT_DEIRA (Q9RSP3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 649 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Frame = -2 Query: 250 NLPHRLTPTYTNVHISRYRPIDVNAMPWECVP----VIVQYWMPDGPM*ICHKQ 101 NLP R +YT +RPI ++ P+ + ++++++ D P+ + +Q Sbjct: 498 NLPERFDISYTGEDGQEHRPIMIHRAPFGSIERFTGILIEHYAGDFPLWLAPRQ 551
>ACON_SCHPO (O13966) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)| (Citrate hydro-lyase) (Aconitase) Length = 778 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -1 Query: 236 VNSDIYKR-TYIKISSDRCECNAMGVRTRYCPVLDAGWPDVNLP 108 VN DI + +Y+K+ DR C + + AG P+V +P Sbjct: 74 VNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVP 117 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,029,378 Number of Sequences: 219361 Number of extensions: 1029215 Number of successful extensions: 3173 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3173 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
