ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63e22 |
|---|---|
| Clone Library Name | barley_pub |
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 206 bits (523), Expect = 2e-53 Identities = 101/102 (99%), Positives = 101/102 (99%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY Sbjct: 324 FPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 383 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 124 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK Sbjct: 384 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 181 bits (460), Expect = 5e-46 Identities = 85/102 (83%), Positives = 94/102 (92%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRKWVG G+ENI KRLVNSR+GP TF+QPKMT+EKL+EY Sbjct: 327 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 386 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 124 GHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYGK Sbjct: 387 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGK 428
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 179 bits (454), Expect = 2e-45 Identities = 86/101 (85%), Positives = 94/101 (93%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRKWV + GVENI KRLVNSREGPP F+QPKMTIEKL+EY Sbjct: 327 FPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEY 386 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 127 G+MLV+EQENVKRVQLA++YLSEAALG AN DAMKTG+FYG Sbjct: 387 GYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 178 bits (452), Expect = 4e-45 Identities = 83/100 (83%), Positives = 96/100 (96%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VR+WV E GVENI+++LVNS+EGPPTF+QPK+TIEKL+EY Sbjct: 333 FPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEY 392 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFY 130 GHMLV EQENVKRVQLADKYL+EAALG+AN+DAMKTG+F+ Sbjct: 393 GHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 177 bits (449), Expect = 9e-45 Identities = 84/101 (83%), Positives = 93/101 (92%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRKW+ +GV++I K+LVNS+EGPPTF+QPKMTIEKL+EY Sbjct: 337 FPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEY 396 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 127 G+MLVQEQENVKRVQLADKYLSEAALG AN DAM TG FYG Sbjct: 397 GNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 169 bits (429), Expect = 2e-42 Identities = 79/99 (79%), Positives = 91/99 (91%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRKWV E+GV+ I K+LVNS+EGPPTF+QPKMTI+KL++Y Sbjct: 337 FPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQY 396 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAF 133 G+MLV+EQENVKRVQLADKY+SEAALG AN DA+K G F Sbjct: 397 GNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 169 bits (428), Expect = 3e-42 Identities = 80/101 (79%), Positives = 91/101 (90%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVY D VRKWV E+GV+ I K+LVNS+EGPP+F+QPKMTI+KL+ Y Sbjct: 337 FPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGY 396 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 127 G MLVQEQENVKRVQLADKY+SEAALG AN+DA+K G FYG Sbjct: 397 GGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 167 bits (422), Expect = 1e-41 Identities = 76/100 (76%), Positives = 93/100 (93%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRKW+ +GV+ K+LVNS+EGPPTFDQPKM+++KL++Y Sbjct: 339 FPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQY 398 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFY 130 G+MLVQEQENVKRVQLADKYL+EAALG AN+DA+K+G+F+ Sbjct: 399 GNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 164 bits (415), Expect = 8e-41 Identities = 75/102 (73%), Positives = 90/102 (88%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVY D VRKWV +GV+N+ K+LVNS++GPP F+QP+MT++KLMEY Sbjct: 335 FPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEY 394 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 124 G+MLVQEQENVKRVQLAD+Y+S AALG AN DA+ G F+GK Sbjct: 395 GNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGK 436
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 162 bits (411), Expect = 2e-40 Identities = 80/102 (78%), Positives = 88/102 (86%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRK+V +GVE I KRLVNSREGPP F+QP+MT EKLMEY Sbjct: 337 FPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEY 396 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 124 G+MLV EQENVKRVQLA+ YLS+AALG AN DA+ G FYGK Sbjct: 397 GNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGK 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 162 bits (410), Expect = 3e-40 Identities = 74/99 (74%), Positives = 91/99 (91%) Frame = -1 Query: 426 PGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYG 247 PGQSIDFFGALRARVYDD VRKW+ +GV+++ K+LVNS+EGPPTFDQPKMT++KL+ Y Sbjct: 342 PGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYA 401 Query: 246 HMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFY 130 MLVQEQENVKRVQLAD+YL+EAALG AN+DA+K+G+F+ Sbjct: 402 SMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 161 bits (408), Expect = 5e-40 Identities = 77/100 (77%), Positives = 87/100 (87%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRKWV G+E I +L+NS +GPPTF+QPKMTIEKL+EY Sbjct: 341 FPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEY 400 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFY 130 G+MLVQEQENVKRVQLADKYL EAALG AN DA+ G+F+ Sbjct: 401 GNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 157 bits (398), Expect = 8e-39 Identities = 75/97 (77%), Positives = 86/97 (88%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRKWV G+E I ++L+NSR+GPPTF+QPKMT+EKL+EY Sbjct: 336 FPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEY 395 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTG 139 G+MLVQEQENVKRVQLA+ YL EAALG AN DA+ TG Sbjct: 396 GNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 156 bits (394), Expect = 2e-38 Identities = 75/99 (75%), Positives = 85/99 (85%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRKWV G+E I +L+NS +GPPTF+QPKMT+EKL+EY Sbjct: 341 FPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEY 400 Query: 249 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAF 133 G+MLVQEQENVKRVQLA+ YL EAALG AN DA+ TG F Sbjct: 401 GNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 129 bits (323), Expect = 4e-30 Identities = 61/76 (80%), Positives = 67/76 (88%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VRKW +GVE I + LVNS+E PPTFDQPKMTIEKL+EY Sbjct: 334 FPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEY 393 Query: 249 GHMLVQEQENVKRVQL 202 G+MLV EQENVKRV+L Sbjct: 394 GNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 101 bits (252), Expect = 7e-22 Identities = 52/86 (60%), Positives = 64/86 (74%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FPGQSIDFFGALRARVYDD VR+W+ + GV+ I ++LVN+R+ + M + L++Y Sbjct: 310 FPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKY 368 Query: 249 GHMLVQEQENVKRVQLADKYLSEAAL 172 G LV EQENVKRVQLAD YLS A L Sbjct: 369 GKSLVDEQENVKRVQLADAYLSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 91.3 bits (225), Expect = 9e-19 Identities = 39/80 (48%), Positives = 58/80 (72%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FP QSIDFF ALR+R+YD+ +R ++ ++G EN+S R+VNS EGPP F +P T+ L+E Sbjct: 210 FPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIES 269 Query: 249 GHMLVQEQENVKRVQLADKY 190 + +V EQ+ ++ QL D+Y Sbjct: 270 ANFMVAEQKRIETSQLVDEY 289
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 414 Score = 83.2 bits (204), Expect = 2e-16 Identities = 38/80 (47%), Positives = 56/80 (70%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEY 250 FP QSIDFF ALR+R+YD +R ++ ++G E IS R+VNS E PP F +P ++ L+E Sbjct: 210 FPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIES 269 Query: 249 GHMLVQEQENVKRVQLADKY 190 G++++ EQ+ V QL D+Y Sbjct: 270 GNLVLGEQQRVDNSQLVDEY 289
>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast (RuBisCO activase) (RA) (Fragments) Length = 32 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/56 (46%), Positives = 27/56 (48%) Frame = -1 Query: 429 FPGQSIDFFGALRARVYDDXVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEK 262 FPGQSIDFFGALR EGPPTF+QP MTIEK Sbjct: 5 FPGQSIDFFGALR----------------------------EGPPTFEQPAMTIEK 32
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 32.7 bits (73), Expect = 0.37 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = -3 Query: 328 QAPRQLEGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQ 185 QAPRQ + A RP G RP A PG R++ RR+ P+ Sbjct: 250 QAPRQEDSRPARARPGPPTRGRRRGRRP-AAPGPASRRSARLRRRQPR 296
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 32.7 bits (73), Expect = 0.37 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = -3 Query: 328 QAPRQLEGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQ 185 QAPRQ + A RP G RP A PG R++ RR+ P+ Sbjct: 250 QAPRQEDSRPARARPGPPTRGRRRGRRP-AAPGPASRRSARLRRRQPR 296
>DNAA_STRAW (Q82FD8) Chromosomal replication initiator protein dnaA| Length = 653 Score = 30.4 bits (67), Expect = 1.9 Identities = 19/59 (32%), Positives = 24/59 (40%) Frame = -3 Query: 319 RQLEGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGARPSQRRRHED 143 R EG + R DDHR+ H R GPG + P RG P+ R + D Sbjct: 125 RGREGYEGYGRHRADDHRQGHNDRHQGGPG---------DQLPPSRGDQLPTARPAYPD 174
>ABL_DROME (P00522) Tyrosine-protein kinase Abl (EC 2.7.10.2) (Abelson| protein) (D-ash) Length = 1620 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/29 (51%), Positives = 17/29 (58%) Frame = -2 Query: 428 SRGSPSTSSARCGHGCTTTRCASGSARSA 342 S +PSTS G G TTT ASG A S+ Sbjct: 647 SSSAPSTSGVATGGGATTTTAASGCASSS 675
>ODO1_STAS1 (Q49XM5) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Frame = -1 Query: 354 GEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQ-------EQENVKRVQLAD 196 GE + ++ N +G T + I+ + +YGH+L ++ENV ++ + D Sbjct: 49 GEANIATNTEGQSNVTKGDSTIKRVMRLIDNIRQYGHLLADIYPVNRPQRENVPKLNMED 108 Query: 195 KYLSEAAL 172 L + L Sbjct: 109 FNLDQETL 116
>NIFD_CLOPA (P00467) Nitrogenase molybdenum-iron protein alpha chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase) Length = 533 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/52 (28%), Positives = 30/52 (57%) Frame = +2 Query: 263 FSMVILGWSNVGGPSLELTRRLEMFSTPISPTHLRTXSSYTRARSAPKKSMD 418 +S+ +LG N+GG + E+ R LE ++ T L ++Y + ++A K ++ Sbjct: 207 YSINVLGEYNIGGDAWEMDRVLEKIGYHVNAT-LTGDATYEKVQNADKADLN 257
>H1X_HUMAN (Q92522) Histone H1x| Length = 213 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 34 ESKSLSGFRVQNSPTYI*CMHAS*VE*DLLLAVEGTGLHG 153 E+K + F QN TY+ + V+ D LL V+GTG +G Sbjct: 73 EAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANG 112
>41_CANFA (Q6Q7P4) Protein 4.1 (Band 4.1) (P4.1) (4.1R)| Length = 810 Score = 28.5 bits (62), Expect = 7.1 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 21/107 (19%) Frame = -3 Query: 301 AAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGAR---PSQR--RRHED-- 143 +A +PAQ++HRE G G E + + P+ R SQ+ RRH + Sbjct: 153 SAETQPAQEEHREDPDFETKEGGGLEECSKIEVKEESPESKAERELKASQKSIRRHRNMH 212 Query: 142 -----------RCLL-RQVEGPTLLKMHACTIYML--DYFGPEIHSN 44 C++ + +G LLK + +L DYFG I N Sbjct: 213 CKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDN 259
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -3 Query: 256 GVRPHAGPGAGERQACAARRQVPQRGGARPSQRRRHEDRCLLRQVEGP 113 G +P GPG G A + P RGG P R+H + +GP Sbjct: 207 GPKPGGGPGMG---APGGHPKPPHRGGGEPRGGRQHHAPYHQQHHQGP 251 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,993,905 Number of Sequences: 219361 Number of extensions: 979281 Number of successful extensions: 3357 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3348 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
