ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63e22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 821 bits (414), Expect = 0.0 Identities = 425/429 (99%) Strand = Plus / Minus Query: 1 agagacttacaattgggttacctgtgcggcgatgaatcaaaaagtttgagtggatttcgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4163 agagacttacaattgggttacctgtgcggcgatgaatcaaaaagtttgagtggatttcgg 4104 Query: 61 gtccaaaatagtccaacatatatatagtgcatgcatgcatcttaagtagagtaggacctt 120 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 4103 gtccaaaatagtccaacatatatatagtgcatgcatcgatcttaagtagagtaggacctt 4044 Query: 121 ctacttgccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4043 ctacttgccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgc 3984 Query: 181 ctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3983 ctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccag 3924 Query: 241 catgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3923 catgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcgg 3864 Query: 301 cccctccctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgaccca 360 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3863 cccctccctggagttgacgaggcgcttggagatgttctccacgccgatctcgccgaccca 3804 Query: 361 cttgcgcacctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactg 420 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3803 cttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactg 3744 Query: 421 ccccgggaa 429 ||||||||| Sbjct: 3743 ccccgggaa 3735 Score = 99.6 bits (50), Expect = 7e-18 Identities = 169/209 (80%) Strand = Plus / Minus Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 7229 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 7170 Query: 263 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 322 ||||| | |||||||| ||||| ||||| || ||||| |||| |||||| || || Sbjct: 7169 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 7110 Query: 323 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctngtcgtcgtac 382 | |||| |||||||| | ||| | |||||||||||||||||||| ||||||||| Sbjct: 7109 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 7050 Query: 383 acccgtgcccgcagcgcgccgaagaagtc 411 ||||| || ||||| || ||||| ||||| Sbjct: 7049 acccgagcacgcagagcaccgaaaaagtc 7021
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 821 bits (414), Expect = 0.0 Identities = 425/429 (99%) Strand = Plus / Minus Query: 1 agagacttacaattgggttacctgtgcggcgatgaatcaaaaagtttgagtggatttcgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1594 agagacttacaattgggttacctgtgcggcgatgaatcaaaaagtttgagtggatttcgg 1535 Query: 61 gtccaaaatagtccaacatatatatagtgcatgcatgcatcttaagtagagtaggacctt 120 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1534 gtccaaaatagtccaacatatatatagtgcatgcatcgatcttaagtagagtaggacctt 1475 Query: 121 ctacttgccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1474 ctacttgccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgc 1415 Query: 181 ctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1414 ctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccag 1355 Query: 241 catgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1354 catgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcgg 1295 Query: 301 cccctccctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgaccca 360 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1294 cccctccctggagttgacgaggcgcttggagatgttctccacgccgatctcgccgaccca 1235 Query: 361 cttgcgcacctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactg 420 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1234 cttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactg 1175 Query: 421 ccccgggaa 429 ||||||||| Sbjct: 1174 ccccgggaa 1166
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 632 bits (319), Expect = e-178 Identities = 408/437 (93%), Gaps = 12/437 (2%) Strand = Plus / Minus Query: 1 agagacttacaattgggttacctgtgcggcgatgaatcaaaaagtttgagtggatttcgg 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 1448 agagacttacaattgggctacctgtgcggcgatgaatcaaaaagtttgagtggatt-cga 1390 Query: 61 gtccaaaatagtccaacatatatatagtgcatgcatgca--------tcttaagtagagt 112 |||||||||| |||| ||||||||||||||||||||||| ||||||||| | Sbjct: 1389 gtccaaaatattccagcatatatatagtgcatgcatgcacgcatgcatcttaagta---t 1333 Query: 113 aggaccttctacttgccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccg 172 ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 1332 aggactttctacttgccgtagaaggcgccggtcgccatggcgtcgtcgttggcttggccg 1273 Query: 173 agcgccgcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcc 232 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 1272 agcgccgcctcgctgaggtacttgtcggcgagctgcacgcgcttcacgttctcctgctcc 1213 Query: 233 tggaccagcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaac 292 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1212 tggaccagcatgtggccgtactccatgagcttctcgatggtcatcttgggctggtcgaac 1153 Query: 293 gtgggcggcccctccctcgagttgacgaggcgcttggagatgttctccacgccgatctcg 352 || |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 1152 gtcggcggcccctccctggagttgacgagccgcttggagatgttctcgacgccgatctcg 1093 Query: 353 ccgacccacttgcgcacctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcg 412 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 1092 ccgacccacttgcgcacctcgtcgtcgtacacccgcgcccgcagcgcgccgaagaagtcg 1033 Query: 413 atggactgccccgggaa 429 ||||||||||||||||| Sbjct: 1032 atggactgccccgggaa 1016
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 254 bits (128), Expect = 2e-64 Identities = 247/287 (86%) Strand = Plus / Minus Query: 143 gtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctgaggtacttgtcggcg 202 |||||||||||||| |||||||||| || || || |||||| ||||||||||||| || Sbjct: 908 gtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggtacttgtcagca 849 Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 848 agctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgtactccaagagc 789 Query: 263 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 322 ||||| || || ||||||||||| |||||||||||||| |||||| | ||||||||||| Sbjct: 788 ttctcgatcgttatcttgggctgctcgaacgtgggcgggccctccttggagttgacgagc 729 Query: 323 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctngtcgtcgtac 382 | ||| ||||||||| |||||| |||||| |||||| || |||| ||||||||| Sbjct: 728 ttcctggcgatgttctcgacgccggtctcgctcacccaccgtcggacctcgtcgtcgtag 669 Query: 383 acccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct: 668 acccgggcacgcagcgcgccgaagaagtcgatggactggccagggaa 622
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 246 bits (124), Expect = 5e-62 Identities = 246/287 (85%) Strand = Plus / Minus Query: 143 gtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctgaggtacttgtcggcg 202 |||||||||||||| |||||||||| || || || |||||| ||||||||||||| || Sbjct: 1303 gtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggtacttgtcagca 1244 Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 1243 agctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgtactccaagagc 1184 Query: 263 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 322 ||||| || || ||||||||||| |||||||||||||| |||||| | ||||||||||| Sbjct: 1183 ttctcgatcgttatcttgggctgctcgaacgtgggcgggccctccttggagttgacgagc 1124 Query: 323 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctngtcgtcgtac 382 | ||| ||||||||| |||||| |||||| |||||| || |||| ||||||||| Sbjct: 1123 ttcctggcgatgttctcgacgccggtctcgctcacccaccgtcggacctcgtcgtcgtag 1064 Query: 383 acccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||| || ||||||||||||||||| ||||||||||| || ||||| Sbjct: 1063 acccgggcacgcagcgcgccgaagaaatcgatggactggccagggaa 1017
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 230 bits (116), Expect = 3e-57 Identities = 244/287 (85%) Strand = Plus / Minus Query: 143 gtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctgaggtacttgtcggcg 202 |||||||||||||| |||||||||| || || || |||||| ||||||||||||| || Sbjct: 1303 gtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggtacttgtcagca 1244 Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 1243 agctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgtactccaagagc 1184 Query: 263 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 322 ||||| || || ||||||||||| |||||||||||||| |||||| | ||||||||||| Sbjct: 1183 ttctcgatcgttatcttgggctgctcgaacgtgggcgggccctccttggagttgacgagc 1124 Query: 323 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctngtcgtcgtac 382 | ||| ||||||||| |||||| |||||| |||||| || |||| ||||||||| Sbjct: 1123 ttcctggcgatgttctcgacgccggtctcgctcacccaccgtcggacctcgtcgtcgtag 1064 Query: 383 acccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||| || ||||||||||||||||| ||||||||||| || ||||| Sbjct: 1063 accgtggcacgcagcgcgccgaagaaatcgatggactggccggggaa 1017
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 149 bits (75), Expect = 9e-33 Identities = 236/290 (81%) Strand = Plus / Minus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1070 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 |||| ||||||||| || || || || || ||||||||||| |||||||| Sbjct: 1069 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatgga 1020
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 149 bits (75), Expect = 9e-33 Identities = 236/290 (81%) Strand = Plus / Minus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1357 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1298 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1297 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1238 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1237 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1178 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1177 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1118 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 |||| ||||||||| || || || || || ||||||||||| |||||||| Sbjct: 1117 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatgga 1068
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 149 bits (75), Expect = 9e-33 Identities = 236/290 (81%) Strand = Plus / Minus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1308 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1249 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1248 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1189 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1188 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1129 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1128 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1069 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 |||| ||||||||| || || || || || ||||||||||| |||||||| Sbjct: 1068 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatgga 1019
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 149 bits (75), Expect = 9e-33 Identities = 236/290 (81%) Strand = Plus / Minus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1346 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1287 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1286 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1227 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1226 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1167 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1166 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1107 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 |||| ||||||||| || || || || || ||||||||||| |||||||| Sbjct: 1106 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatgga 1057
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 149 bits (75), Expect = 9e-33 Identities = 236/290 (81%) Strand = Plus / Minus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1345 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1286 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1285 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1226 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1225 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1166 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1165 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1106 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 |||| ||||||||| || || || || || ||||||||||| |||||||| Sbjct: 1105 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatgga 1056
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 149 bits (75), Expect = 9e-33 Identities = 236/290 (81%) Strand = Plus / Minus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1129 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1070 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1069 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1010 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1009 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 950 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 949 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 890 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 |||| ||||||||| || || || || || ||||||||||| |||||||| Sbjct: 889 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatgga 840
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 149 bits (75), Expect = 9e-33 Identities = 236/290 (81%) Strand = Plus / Minus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1350 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1291 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1290 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1231 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1230 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1171 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1170 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1111 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 |||| ||||||||| || || || || || ||||||||||| |||||||| Sbjct: 1110 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatgga 1061
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 149 bits (75), Expect = 9e-33 Identities = 236/290 (81%) Strand = Plus / Minus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1105 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 |||| ||||||||| || || || || || ||||||||||| |||||||| Sbjct: 1104 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatgga 1055
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 141 bits (71), Expect = 2e-30 Identities = 235/290 (81%) Strand = Plus / Minus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1314 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1255 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1254 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1195 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 |||||||| |||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1194 ccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1135 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1134 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1075 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 |||| ||||||||| || || || || || ||||||||||| |||||||| Sbjct: 1074 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatgga 1025
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 141 bits (71), Expect = 2e-30 Identities = 235/290 (81%) Strand = Plus / Minus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 563 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 504 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 503 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 444 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 |||||||| |||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 443 ccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 384 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 383 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 324 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 |||| ||||||||| || || || || || ||||||||||| |||||||| Sbjct: 323 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatgga 274
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 139 bits (70), Expect = 8e-30 Identities = 228/281 (81%) Strand = Plus / Plus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 108311 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 108370 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 108371 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 108430 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 108431 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 108490 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 108491 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 108550 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaa 408 |||| ||||||||| || || || || || ||||||||||| Sbjct: 108551 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaa 108591 Score = 109 bits (55), Expect = 7e-21 Identities = 104/120 (86%), Gaps = 4/120 (3%) Strand = Plus / Plus Query: 170 ccgagcgccgcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgc 229 |||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||| Sbjct: 112186 ccgagcgccgcctcgctgaggtacttatcggcgagccgcaccctcttgacgttctcctgc 112245 Query: 230 tcctggaccagcatgt----ggccgtactccatgagcttctctatggtcatcttgggctg 285 ||| |||||||||| | ||||||||||| ||||| || || |||||||||||||| Sbjct: 112246 tccctcaccagcatgtgccggcccgtactccatcagcttgtcgatcgtcatcttgggctg 112305 Score = 85.7 bits (43), Expect = 1e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 331 gatgttctccacgccgatctcgccgacccacttgcgcacctngtcgtcgtacacccgtgc 390 |||||||||||| |||||||| | |||||| ||||||| |||| |||||||||| || Sbjct: 112344 gatgttctccaccccgatctccgccacccaccgccgcacctcgtcgccgtacacccgcgc 112403 Query: 391 ccgcagcgcgccgaagaagtcgatgg 416 ||||||||| |||||||||||||||| Sbjct: 112404 ccgcagcgccccgaagaagtcgatgg 112429
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 139 bits (70), Expect = 8e-30 Identities = 228/281 (81%) Strand = Plus / Plus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 30188 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 30247 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 30248 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 30307 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 30308 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 30367 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 30368 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 30427 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaa 408 |||| ||||||||| || || || || || ||||||||||| Sbjct: 30428 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaa 30468 Score = 109 bits (55), Expect = 7e-21 Identities = 104/120 (86%), Gaps = 4/120 (3%) Strand = Plus / Plus Query: 170 ccgagcgccgcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgc 229 |||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||| Sbjct: 34063 ccgagcgccgcctcgctgaggtacttatcggcgagccgcaccctcttgacgttctcctgc 34122 Query: 230 tcctggaccagcatgt----ggccgtactccatgagcttctctatggtcatcttgggctg 285 ||| |||||||||| | ||||||||||| ||||| || || |||||||||||||| Sbjct: 34123 tccctcaccagcatgtgccggcccgtactccatcagcttgtcgatcgtcatcttgggctg 34182 Score = 85.7 bits (43), Expect = 1e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 331 gatgttctccacgccgatctcgccgacccacttgcgcacctngtcgtcgtacacccgtgc 390 |||||||||||| |||||||| | |||||| ||||||| |||| |||||||||| || Sbjct: 34221 gatgttctccaccccgatctccgccacccaccgccgcacctcgtcgccgtacacccgcgc 34280 Query: 391 ccgcagcgcgccgaagaagtcgatgg 416 ||||||||| |||||||||||||||| Sbjct: 34281 ccgcagcgccccgaagaagtcgatgg 34306
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 139 bits (70), Expect = 8e-30 Identities = 228/281 (81%) Strand = Plus / Plus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 28303450 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 28303509 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 28303510 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 28303569 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 28303570 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 28303629 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 28303630 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 28303689 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaa 408 |||| ||||||||| || || || || || ||||||||||| Sbjct: 28303690 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaa 28303730 Score = 109 bits (55), Expect = 7e-21 Identities = 104/120 (86%), Gaps = 4/120 (3%) Strand = Plus / Plus Query: 170 ccgagcgccgcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgc 229 |||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||| Sbjct: 28307325 ccgagcgccgcctcgctgaggtacttatcggcgagccgcaccctcttgacgttctcctgc 28307384 Query: 230 tcctggaccagcatgt----ggccgtactccatgagcttctctatggtcatcttgggctg 285 ||| |||||||||| | ||||||||||| ||||| || || |||||||||||||| Sbjct: 28307385 tccctcaccagcatgtgccggcccgtactccatcagcttgtcgatcgtcatcttgggctg 28307444 Score = 85.7 bits (43), Expect = 1e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 331 gatgttctccacgccgatctcgccgacccacttgcgcacctngtcgtcgtacacccgtgc 390 |||||||||||| |||||||| | |||||| ||||||| |||| |||||||||| || Sbjct: 28307483 gatgttctccaccccgatctccgccacccaccgccgcacctcgtcgccgtacacccgcgc 28307542 Query: 391 ccgcagcgcgccgaagaagtcgatgg 416 ||||||||| |||||||||||||||| Sbjct: 28307543 ccgcagcgccccgaagaagtcgatgg 28307568
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 139 bits (70), Expect = 8e-30 Identities = 228/281 (81%) Strand = Plus / Plus Query: 128 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 187 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 28285899 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 28285958 Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 28285959 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 28286018 Query: 248 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 307 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 28286019 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 28286078 Query: 308 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 367 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 28286079 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 28286138 Query: 368 acctngtcgtcgtacacccgtgcccgcagcgcgccgaagaa 408 |||| ||||||||| || || || || || ||||||||||| Sbjct: 28286139 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaa 28286179 Score = 109 bits (55), Expect = 7e-21 Identities = 104/120 (86%), Gaps = 4/120 (3%) Strand = Plus / Plus Query: 170 ccgagcgccgcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgc 229 |||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||| Sbjct: 28289774 ccgagcgccgcctcgctgaggtacttatcggcgagccgcaccctcttgacgttctcctgc 28289833 Query: 230 tcctggaccagcatgt----ggccgtactccatgagcttctctatggtcatcttgggctg 285 ||| |||||||||| | ||||||||||| ||||| || || |||||||||||||| Sbjct: 28289834 tccctcaccagcatgtgccggcccgtactccatcagcttgtcgatcgtcatcttgggctg 28289893 Score = 85.7 bits (43), Expect = 1e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 331 gatgttctccacgccgatctcgccgacccacttgcgcacctngtcgtcgtacacccgtgc 390 |||||||||||| |||||||| | |||||| ||||||| |||| |||||||||| || Sbjct: 28289932 gatgttctccaccccgatctccgccacccaccgccgcacctcgtcgccgtacacccgcgc 28289991 Query: 391 ccgcagcgcgccgaagaagtcgatgg 416 ||||||||| |||||||||||||||| Sbjct: 28289992 ccgcagcgccccgaagaagtcgatgg 28290017
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 137 bits (69), Expect = 3e-29 Identities = 114/129 (88%) Strand = Plus / Minus Query: 179 gcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacc 238 |||||||| |||||||||||||| |||||||| | ||| ||||||||||||||||| ||| Sbjct: 952 gcctcgctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcacc 893 Query: 239 agcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggc 298 ||||||| ||||||||||| ||||| || | ||||||||||||||| ||||||| ||| Sbjct: 892 agcatgttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggc 833 Query: 299 ggcccctcc 307 ||||||||| Sbjct: 832 ggcccctcc 824
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 137 bits (69), Expect = 3e-29 Identities = 114/129 (88%) Strand = Plus / Minus Query: 179 gcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacc 238 |||||||| |||||||||||||| |||||||| | ||| ||||||||||||||||| ||| Sbjct: 1146 gcctcgctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcacc 1087 Query: 239 agcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggc 298 ||||||| ||||||||||| ||||| || | ||||||||||||||| ||||||| ||| Sbjct: 1086 agcatgttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggc 1027 Query: 299 ggcccctcc 307 ||||||||| Sbjct: 1026 ggcccctcc 1018
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 121 bits (61), Expect = 2e-24 Identities = 112/129 (86%) Strand = Plus / Minus Query: 179 gcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacc 238 |||||||| |||||||||||||| |||||||| | ||| ||||||||||| ||||| ||| Sbjct: 1253 gcctcgctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcacc 1194 Query: 239 agcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggc 298 ||||| | ||||||||||| ||||| || | ||||||||||||||| ||||||| ||| Sbjct: 1193 agcatattgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggc 1134 Query: 299 ggcccctcc 307 ||||||||| Sbjct: 1133 ggcccctcc 1125 Score = 44.1 bits (22), Expect = 0.37 Identities = 63/77 (81%) Strand = Plus / Minus Query: 341 acgccgatctcgccgacccacttgcgcacctngtcgtcgtacacccgtgcccgcagcgcg 400 |||||||| ||| | | |||||| | ||||| ||||||||| |||| |||| ||| || Sbjct: 1091 acgccgatttcggcaatccacttcctcacctcgtcgtcgtagaccctcgccctcagtgca 1032 Query: 401 ccgaagaagtcgatgga 417 ||||||||||| ||||| Sbjct: 1031 ccgaagaagtcaatgga 1015
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 121 bits (61), Expect = 2e-24 Identities = 112/129 (86%) Strand = Plus / Minus Query: 179 gcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacc 238 |||||||| |||||||||||||| |||||||| | ||| ||||||||||| ||||| ||| Sbjct: 1116 gcctcgctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcacc 1057 Query: 239 agcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggc 298 ||||| | ||||||||||| ||||| || | ||||||||||||||| ||||||| ||| Sbjct: 1056 agcatattgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggc 997 Query: 299 ggcccctcc 307 ||||||||| Sbjct: 996 ggcccctcc 988 Score = 44.1 bits (22), Expect = 0.37 Identities = 63/77 (81%) Strand = Plus / Minus Query: 341 acgccgatctcgccgacccacttgcgcacctngtcgtcgtacacccgtgcccgcagcgcg 400 |||||||| ||| | | |||||| | ||||| ||||||||| |||| |||| ||| || Sbjct: 954 acgccgatttcggcaatccacttcctcacctcgtcgtcgtagaccctcgccctcagtgca 895 Query: 401 ccgaagaagtcgatgga 417 ||||||||||| ||||| Sbjct: 894 ccgaagaagtcaatgga 878
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 103 bits (52), Expect = 5e-19 Identities = 174/215 (80%) Strand = Plus / Minus Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1346 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 1287 Query: 263 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 322 ||||| | |||||||| ||||| ||||| || ||||| |||| |||||| || || Sbjct: 1286 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 1227 Query: 323 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctngtcgtcgtac 382 | |||| |||||||| | ||| | |||||||||||||||||||| ||||||||| Sbjct: 1226 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 1167 Query: 383 acccgtgcccgcagcgcgccgaagaagtcgatgga 417 ||||| || ||||| || ||||| ||||| ||||| Sbjct: 1166 acccgagcacgcagagcaccgaaaaagtcaatgga 1132
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 103 bits (52), Expect = 5e-19 Identities = 174/215 (80%) Strand = Plus / Minus Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1091 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 1032 Query: 263 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 322 ||||| | |||||||| ||||| ||||| || ||||| |||| |||||| || || Sbjct: 1031 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 972 Query: 323 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctngtcgtcgtac 382 | |||| |||||||| | ||| | |||||||||||||||||||| ||||||||| Sbjct: 971 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 912 Query: 383 acccgtgcccgcagcgcgccgaagaagtcgatgga 417 ||||| || ||||| || ||||| ||||| ||||| Sbjct: 911 acccgagcacgcagagcaccgaaaaagtcaatgga 877
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 ||||||||||||||||| || |||||||||||||| ||||||||||||||||||| | | Sbjct: 1277 agctgcacacgcttgacattgtcctgctcctggacaagcatgtggccgtactccagcaac 1218 Query: 263 ttctctatggtcatcttgggctggtcgaa 291 ||||| | |||||||||||||| ||||| Sbjct: 1217 ttctccaccgtcatcttgggctgctcgaa 1189 Score = 77.8 bits (39), Expect = 3e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 356 acccacttgcgcacctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatg 415 |||||||||||||||| ||||||||||||| || ||||| || ||||||||||||||| Sbjct: 1124 acccacttgcgcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatg 1065 Query: 416 gactgccccgggaa 429 ||||| || ||||| Sbjct: 1064 gactgtcctgggaa 1051
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 ||||||||||||||||| || |||||||||||||| ||||||||||||||||||| | | Sbjct: 1287 agctgcacacgcttgacattgtcctgctcctggacaagcatgtggccgtactccagcaac 1228 Query: 263 ttctctatggtcatcttgggctggtcgaa 291 ||||| | |||||||||||||| ||||| Sbjct: 1227 ttctccaccgtcatcttgggctgctcgaa 1199 Score = 93.7 bits (47), Expect = 4e-16 Identities = 67/74 (90%) Strand = Plus / Minus Query: 356 acccacttgcgcacctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatg 415 |||||||||||||||| ||||||||||||||| || ||||| || ||||||||||||||| Sbjct: 1134 acccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatg 1075 Query: 416 gactgccccgggaa 429 ||||| || ||||| Sbjct: 1074 gactgtcctgggaa 1061
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 416 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 357 Query: 263 ttctctatggtcatcttgggctg 285 ||||| | |||||||| ||||| Sbjct: 356 ttctccactgtcatctttggctg 334 Score = 77.8 bits (39), Expect = 3e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 356 acccacttgcgcacctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatg 415 |||||||||||||||| ||||||||||||||| || ||||| || ||||| ||||||||| Sbjct: 263 acccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatg 204 Query: 416 ga 417 || Sbjct: 203 ga 202
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1266 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 1207 Query: 263 ttctctatggtcatcttgggctg 285 ||||| | |||||||| ||||| Sbjct: 1206 ttctccactgtcatctttggctg 1184 Score = 77.8 bits (39), Expect = 3e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 356 acccacttgcgcacctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatg 415 |||||||||||||||| ||||||||||||||| || ||||| || ||||| ||||||||| Sbjct: 1113 acccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatg 1054 Query: 416 ga 417 || Sbjct: 1053 ga 1052
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 203 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 262 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 210 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 151 Query: 263 ttctctatggtcatcttgggctg 285 ||||| | |||||||| ||||| Sbjct: 150 ttctcgactgtcatctttggctg 128 Score = 65.9 bits (33), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 356 acccacttgcgcacctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 411 |||||||||||||||| ||||||||||||||| || ||||| || ||||| ||||| Sbjct: 57 acccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 2
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||||||||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 619 gtcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaa 563
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||||||||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 627 gtcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaa 571
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 65.9 bits (33), Expect = 1e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 358 ccacttgcgcacctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 ||||| ||||||| |||||||||||| || || ||||| |||||||||||||| ||||| Sbjct: 2739 ccactggcgcaccatgtcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 2680 Query: 418 ctgccccgggaa 429 ||| || ||||| Sbjct: 2679 ctggccggggaa 2668 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 197 tcggcgagctgcacacgcttgacgttctcctgctc 231 ||||| |||||||| |||||||||||||||||||| Sbjct: 3239 tcggccagctgcacgcgcttgacgttctcctgctc 3205
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 65.9 bits (33), Expect = 1e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 358 ccacttgcgcacctngtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 417 ||||| ||||||| |||||||||||| || || ||||| |||||||||||||| ||||| Sbjct: 1049 ccactggcgcaccatgtcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 990 Query: 418 ctgccccgggaa 429 ||| || ||||| Sbjct: 989 ctggccggggaa 978 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 197 tcggcgagctgcacacgcttgacgttctcctgctc 231 ||||| |||||||| |||||||||||||||||||| Sbjct: 1207 tcggccagctgcacgcgcttgacgttctcctgctc 1173
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 637 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 581
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 633 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 577
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 579
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 579
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 639 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 583
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 633 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 577
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 579
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 633 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 577
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 579
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 579
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 579
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 637 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 581
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 579
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 373 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaa 429 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||| Sbjct: 639 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaa 583
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 214 cttgacgttctcctgctcctggaccagcatgtggccgtactccatgagcttctctatggt 273 |||||||||||||||||||||||| |||||| ||||| | | |||||| || || || Sbjct: 1293 cttgacgttctcctgctcctggacaagcatgcctccgtagccaaggagcttatcaattgt 1234 Query: 274 catcttgggctg 285 |||||||||||| Sbjct: 1233 catcttgggctg 1222
>gb|DQ123944.1| Coffea arabica x Coffea canephora clone HT-SSH2-H08 mRNA sequence Length = 488 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 218 acgttctcctgctcctggaccagcatgtggccgtac 253 |||||||||||||| ||||| ||||||| ||||||| Sbjct: 36 acgttctcctgctcttggacgagcatgttgccgtac 1
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 200 gcgagctgcacacgcttgacgttctcctgctc 231 ||||||||||| |||||||| ||||||||||| Sbjct: 2136 gcgagctgcacgcgcttgacattctcctgctc 2105 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 401 ccgaagaagtcgatggactgccccgggaa 429 |||||||||||||| |||||||| ||||| Sbjct: 1935 ccgaagaagtcgatcgactgcccggggaa 1907
>gb|AC140331.2| Mus musculus BAC clone RP23-406J20 from chromosome 13, complete sequence Length = 192473 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 gcttgacgttctcctgctcctggaccagc 241 ||||||| |||||||| |||||||||||| Sbjct: 170620 gcttgacattctcctgttcctggaccagc 170592
>ref|XM_974982.1| PREDICTED: Mus musculus desmoplakin (Dsp), mRNA Length = 8280 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 gcttgacgttctcctgctcctggaccagc 241 ||||||| |||||||| |||||||||||| Sbjct: 4777 gcttgacattctcctgttcctggaccagc 4749
>ref|XM_912083.2| PREDICTED: Mus musculus desmoplakin, transcript variant 3 (Dsp), mRNA Length = 8583 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 gcttgacgttctcctgctcctggaccagc 241 ||||||| |||||||| |||||||||||| Sbjct: 4996 gcttgacattctcctgttcctggaccagc 4968
>ref|XM_621314.3| PREDICTED: Mus musculus desmoplakin, transcript variant 1 (Dsp), mRNA Length = 9592 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 gcttgacgttctcctgctcctggaccagc 241 ||||||| |||||||| |||||||||||| Sbjct: 5360 gcttgacattctcctgttcctggaccagc 5332
>gb|AC124549.5| Mus musculus BAC clone RP23-284E24 from 13, complete sequence Length = 199240 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 gcttgacgttctcctgctcctggaccagc 241 ||||||| |||||||| |||||||||||| Sbjct: 40085 gcttgacattctcctgttcctggaccagc 40057
>dbj|AK009006.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2300002E22 product:desmoplakin, full insert sequence Length = 1423 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 gcttgacgttctcctgctcctggaccagc 241 ||||||| |||||||| |||||||||||| Sbjct: 803 gcttgacattctcctgttcctggaccagc 775
>gb|BC033467.1| Mus musculus desmoplakin, mRNA (cDNA clone IMAGE:4949004) Length = 2915 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 gcttgacgttctcctgctcctggaccagc 241 ||||||| |||||||| |||||||||||| Sbjct: 2607 gcttgacattctcctgttcctggaccagc 2579
>gb|BC033474.1| Homo sapiens renin, mRNA (cDNA clone MGC:34221 IMAGE:5188566), complete cds Length = 1475 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 956 ctccatgagcttctctatgg 937
>gb|AY664490.1| Macaca fascicularis renin (REN) mRNA, complete cds Length = 1280 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 989 ctccatgagcttctctatgg 970
>gb|BC047752.1| Homo sapiens renin, mRNA (cDNA clone MGC:54147 IMAGE:5590211), complete cds Length = 1471 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 959 ctccatgagcttctctatgg 940
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 40.1 bits (20), Expect = 5.8 Identities = 74/92 (80%) Strand = Plus / Minus Query: 188 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 247 ||||||||||| || | ||| || | ||| || ||||| ||||| || || ||||||| | Sbjct: 1332 aggtacttgtcagctaactgaactctcttaacattctcttgctcttgaacaagcatgttg 1273 Query: 248 ccgtactccatgagcttctctatggtcatctt 279 |||||||| | |||||| || || |||||||| Sbjct: 1272 ccgtactcgaggagcttatcgatagtcatctt 1241
>gb|AC124814.10| Mus musculus chromosome 1, clone RP24-119P5, complete sequence Length = 162020 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 catatatatagtgcatgcatgcat 100 ||||| |||||||||||||||||| Sbjct: 122744 catatgtatagtgcatgcatgcat 122721
>ref|NM_001032916.1| Macaca mulatta prorenin (REN), mRNA Length = 1461 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 974 ctccatgagcttctctatgg 955
>ref|XM_743857.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g05590) partial mRNA Length = 720 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ccgtactccatgagcttctc 267 |||||||||||||||||||| Sbjct: 212 ccgtactccatgagcttctc 193
>gb|L00071.1|HUMREN08 Human renin gene, exon 8 Length = 172 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 124 ctccatgagcttctctatgg 105
>gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, complete sequence Length = 198453 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 catatatatagtgcatgcat 96 |||||||||||||||||||| Sbjct: 31511 catatatatagtgcatgcat 31492
>ref|NM_000537.2| Homo sapiens renin (REN), mRNA Length = 1461 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 974 ctccatgagcttctctatgg 955
>emb|AL592146.8| Human DNA sequence from clone RP11-74C13 on chromosome 1 Contains the SOX13 gene for SOX13 SRY (sex determining region Y)-box 13, two novel genes, a novel gene (FLJ10761), the 3' end of the REN gene for renin and two CpG islands, complete sequence Length = 101862 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 95051 ctccatgagcttctctatgg 95070
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 cccgtgcccgcagcgcgccg 403 |||||||||||||||||||| Sbjct: 2456174 cccgtgcccgcagcgcgccg 2456155
>emb|CR933822.8| Zebrafish DNA sequence from clone DKEY-30F7 in linkage group 19, complete sequence Length = 187377 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tatatagtgcatgcatgcat 100 |||||||||||||||||||| Sbjct: 65570 tatatagtgcatgcatgcat 65551
>emb|X00063.1|HSRENK Human kidney mRNA fragment for renin (aa 105-401) Length = 1096 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 609 ctccatgagcttctctatgg 590
>emb|CR926484.1| Pongo pygmaeus mRNA; cDNA DKFZp469I191 (from clone DKFZp469I191) Length = 1474 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 974 ctccatgagcttctctatgg 955
>emb|CR536498.1| Homo sapiens full open reading frame cDNA clone RZPDo834A0620D for gene REN, renin; complete cds, incl. stopcodon Length = 1221 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 930 ctccatgagcttctctatgg 911
>gb|AY436324.1| Homo sapiens renin (REN) gene, complete cds Length = 14148 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 11638 ctccatgagcttctctatgg 11619
>emb|AJ132342.1|CJA132342 Callithrix jacchus mRNA for preprorenin Length = 1203 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 912 ctccatgagcttctctatgg 893
>emb|AL589679.14| Mouse DNA sequence from clone RP23-189A16 on chromosome 13 Contains the 3' end of the Csh1 gene for chorionic somatomammotropin hormone 1, two genes for novel proteins similar to chorionic somatomammotropin hormone 1 (Csh1), the Prlpi gene for prolactin-like protein I (Prlpj, decidualin), the Csh2 gene for chorionic somatomammotropin hormone 2, the gene for protein 1600016E11RIK similar to prolactin and a novel gene (4930511O05Rik), complete sequence Length = 207737 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 aaatagtccaacatatatatagtg 89 ||||||||||| |||||||||||| Sbjct: 162426 aaatagtccaaaatatatatagtg 162403
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 248 ccgtactccatgagcttctctatggtcatctt 279 |||||||| | ||||||||| ||||||||||| Sbjct: 495 ccgtactcgaggagcttctcaatggtcatctt 464
>gb|M10151.1|HUMRENA4 Homo sapiens renin (REN) gene, exons 6, 7, 8, and 9 Length = 3057 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 2172 ctccatgagcttctctatgg 2153
>gb|AC024259.17| Homo sapiens chromosome 7 clone RP11-105B19, complete sequence Length = 177303 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 catatatatagtgcatgcat 96 |||||||||||||||||||| Sbjct: 68633 catatatatagtgcatgcat 68652
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 cacgccgatctcgccgaccc 359 |||||||||||||||||||| Sbjct: 2558497 cacgccgatctcgccgaccc 2558516
>gb|AC154224.1| Mus musculus BAC clone RP24-141J15 from chromosome 13, complete sequence Length = 146998 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aacatatatatagtgcatgc 94 |||||||||||||||||||| Sbjct: 109 aacatatatatagtgcatgc 90
>gb|AF193454.1|F193446S09 Pan troglodytes renin (REN) gene, exon 8 Length = 142 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 112 ctccatgagcttctctatgg 93
>gb|AC098590.3| Homo sapiens BAC clone RP11-324J13 from 4, complete sequence Length = 157544 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 acatatatatagtgcatgcatgca 99 ||||||||||||| |||||||||| Sbjct: 121059 acatatatatagtacatgcatgca 121036
>ref|NM_001009122.1| Pan troglodytes renin (REN), mRNA Length = 1221 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 930 ctccatgagcttctctatgg 911
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cgcgccgaagaagtcgatgg 416 |||||||||||||||||||| Sbjct: 2367826 cgcgccgaagaagtcgatgg 2367845 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 cgcgccgaagaagtcgatgg 416 |||||||||||||||||||| Sbjct: 425250 cgcgccgaagaagtcgatgg 425231
>gb|AY662332.2| Macaca mulatta prorenin (REN) mRNA, complete cds Length = 1461 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctccatgagcttctctatgg 272 |||||||||||||||||||| Sbjct: 974 ctccatgagcttctctatgg 955
>emb|BX936423.12| Zebrafish DNA sequence from clone DKEY-174M14 in linkage group 20, complete sequence Length = 170767 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 tgagcttctctatggtcatcttgg 281 |||||||||| ||||||||||||| Sbjct: 59941 tgagcttctcaatggtcatcttgg 59964
>gb|AC154184.1| Mus musculus BAC clone RP24-67K24 from 13, complete sequence Length = 151468 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 aacatatatatagtgcatgc 94 |||||||||||||||||||| Sbjct: 19290 aacatatatatagtgcatgc 19309
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 248 ccgtactccatgagcttctctatggtcatctt 279 |||||||| | ||||||||| ||||||||||| Sbjct: 1255 ccgtactcgaggagcttctcaatggtcatctt 1224
>emb|AL805929.7| Mouse DNA sequence from clone RP23-252O5 on chromosome X, complete sequence Length = 175802 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tgcatgcatgcatcttaagt 107 |||||||||||||||||||| Sbjct: 22325 tgcatgcatgcatcttaagt 22306 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,138,230 Number of Sequences: 3902068 Number of extensions: 3138230 Number of successful extensions: 59061 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58525 Number of HSP's gapped (non-prelim): 515 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
