ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62p16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009208.1| Triticum aestivum clone wle1n.pk0042.f7:fis, full insert mRNA sequence Length = 755 Score = 1015 bits (512), Expect = 0.0 Identities = 621/654 (94%), Gaps = 5/654 (0%) Strand = Plus / Minus Query: 3 gatgaatattctagtagtgcatctgttccgcacaacctgtga--gcttcataacacgaaa 60 |||||| ||||||||||||||||||||||| ||||||||||| |||||| ||| |||| Sbjct: 693 gatgaacattctagtagtgcatctgttccgtacaacctgtgaaagcttcagaacgtgaaa 634 Query: 61 ttacaaaagcatctagccagactaatgaaaacagcgtgggtacaaacacagctccagaag 120 ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| Sbjct: 633 ttacaaaagcatctagccagactaacgaaaacagcgtgg-tacaaacacaactccagaag 575 Query: 121 atcacgacaaaaatgcttggagcagcagagatt--gtgcatgacatggctaactggaagc 178 ||||| ||||||||||||||||| ||| ||||| ||||| | ||||||||||||||||| Sbjct: 574 atcacaacaaaaatgcttggagcggcatagattttgtgcacggcatggctaactggaagc 515 Query: 179 tggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatactc 238 |||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct: 514 tggaagtggttgcagcgctttaagagggttcacgattactccatcaataaggccatactc 455 Query: 239 cttcgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatccag 298 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 ctttgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatccag 395 Query: 299 gggctgcccggtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatctc 358 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 gggctgcccagtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatctc 335 Query: 359 attggcctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatgaat 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 334 attggcctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatggat 275 Query: 419 cattattcttgagttaggtaagctgtacctcttccctttcgtgccgccactaagtagaaa 478 |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct: 274 cattattcttgagttaggtaagctgtacctcttccctttcgtcccaccgctaagtagaaa 215 Query: 479 agcacccatacttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgctt 538 |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 214 agcacccatacttgcagcaagtccgatacaaactgtcgaaacatcaggcctgatatgctt 155 Query: 539 cattgtatcaaatatggccatcccagctgtcactgatcctcctggagagttcacatacat 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 cattgtatcaaatatggccatcccagctgtcactgatcctcctggagagttcacatacat 95 Query: 599 aatgatatccttgttaggatcaacggcatccagatatagcagctgcgcaacaat 652 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 94 aatgatatccttgttaggatcaacggcgtccaggtatagcagctgcgcaacaat 41
>dbj|AB116073.1| Oryza sativa (japonica cultivar-group) mRNA for ATP-dependent protease, complete cds Length = 1188 Score = 603 bits (304), Expect = e-169 Identities = 442/488 (90%) Strand = Plus / Minus Query: 162 catggctaactggaagctggaagtggttgaagtgctttgagaggattcacgattactcca 221 ||||||||||| ||||| ||||| |||||||| ||||| || ||||||| ||| |||||| Sbjct: 948 catggctaactagaagcaggaagcggttgaagggctttaaggggattcatgataactcca 889 Query: 222 tcgataaggccatactccttcgcctccttcgcgctcatgaagaagtcacggtcagtatct 281 || || || ||||||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct: 888 tcaattagaccatactcctttgcctccttcgcgctcatgaagtaatcacggtcagtatct 829 Query: 282 acattgatcttatccaggggctgcccggtgtggtatgctaggtatccgttcaagttggcc 341 || ||||||||||| ||||||||||| |||||||||||||||||||| |||| ||| ||| Sbjct: 828 acgttgatcttatctaggggctgcccagtgtggtatgctaggtatccattcaggttagcc 769 Query: 342 ttgtggtgcagcatctcattggcctggatctcaaggtcggtctcttgtccttgggctcct 401 ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct: 768 ttgtgatgcagcatctcattagcctggatctcaagatcagtctcttgtccttgggctcct 709 Query: 402 ccaagaggctgatgaatcattattcttgagttaggtaagctgtacctcttccctttcgtg 461 || ||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| || Sbjct: 708 ccgagaggttgatggatcattattcttgagttaggtaagctgtatcgcttcccttttgtc 649 Query: 462 ccgccactaagtagaaaagcacccatacttgcagcaagtccaatacaaactgtggaaaca 521 || ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 648 ccagcactaagcagaaaagctcccatacttgcagcaagtccaatacaaactgtggaaaca 589 Query: 522 tcaggcctaatatgcttcattgtatcaaatatggccatcccagctgtcactgatcctcct 581 ||||| || ||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct: 588 tcaggtctgatatgcttcatcgtgtcgaatatggccatcccagctgtcactgatcctcca 529 Query: 582 ggagagttcacatacataatgatatccttgttaggatcaacggcatccagatatagcagc 641 ||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||| Sbjct: 528 ggagaattcacatacataatgatatccttgttaggatcgatggcatcgagatatagcagc 469 Query: 642 tgcgcaac 649 || ||||| Sbjct: 468 tgggcaac 461
>dbj|AK105977.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F08, full insert sequence Length = 1186 Score = 603 bits (304), Expect = e-169 Identities = 442/488 (90%) Strand = Plus / Minus Query: 162 catggctaactggaagctggaagtggttgaagtgctttgagaggattcacgattactcca 221 ||||||||||| ||||| ||||| |||||||| ||||| || ||||||| ||| |||||| Sbjct: 946 catggctaactagaagcaggaagcggttgaagggctttaaggggattcatgataactcca 887 Query: 222 tcgataaggccatactccttcgcctccttcgcgctcatgaagaagtcacggtcagtatct 281 || || || ||||||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct: 886 tcaattagaccatactcctttgcctccttcgcgctcatgaagtaatcacggtcagtatct 827 Query: 282 acattgatcttatccaggggctgcccggtgtggtatgctaggtatccgttcaagttggcc 341 || ||||||||||| ||||||||||| |||||||||||||||||||| |||| ||| ||| Sbjct: 826 acgttgatcttatctaggggctgcccagtgtggtatgctaggtatccattcaggttagcc 767 Query: 342 ttgtggtgcagcatctcattggcctggatctcaaggtcggtctcttgtccttgggctcct 401 ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct: 766 ttgtgatgcagcatctcattagcctggatctcaagatcagtctcttgtccttgggctcct 707 Query: 402 ccaagaggctgatgaatcattattcttgagttaggtaagctgtacctcttccctttcgtg 461 || ||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| || Sbjct: 706 ccgagaggttgatggatcattattcttgagttaggtaagctgtatcgcttcccttttgtc 647 Query: 462 ccgccactaagtagaaaagcacccatacttgcagcaagtccaatacaaactgtggaaaca 521 || ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 646 ccagcactaagcagaaaagctcccatacttgcagcaagtccaatacaaactgtggaaaca 587 Query: 522 tcaggcctaatatgcttcattgtatcaaatatggccatcccagctgtcactgatcctcct 581 ||||| || ||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct: 586 tcaggtctgatatgcttcatcgtgtcgaatatggccatcccagctgtcactgatcctcca 527 Query: 582 ggagagttcacatacataatgatatccttgttaggatcaacggcatccagatatagcagc 641 ||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||| Sbjct: 526 ggagaattcacatacataatgatatccttgttaggatcgatggcatcgagatatagcagc 467 Query: 642 tgcgcaac 649 || ||||| Sbjct: 466 tgggcaac 459
>dbj|AK060518.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-B09, full insert sequence Length = 1143 Score = 603 bits (304), Expect = e-169 Identities = 442/488 (90%) Strand = Plus / Minus Query: 162 catggctaactggaagctggaagtggttgaagtgctttgagaggattcacgattactcca 221 ||||||||||| ||||| ||||| |||||||| ||||| || ||||||| ||| |||||| Sbjct: 903 catggctaactagaagcaggaagcggttgaagggctttaaggggattcatgataactcca 844 Query: 222 tcgataaggccatactccttcgcctccttcgcgctcatgaagaagtcacggtcagtatct 281 || || || ||||||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct: 843 tcaattagaccatactcctttgcctccttcgcgctcatgaagtaatcacggtcagtatct 784 Query: 282 acattgatcttatccaggggctgcccggtgtggtatgctaggtatccgttcaagttggcc 341 || ||||||||||| ||||||||||| |||||||||||||||||||| |||| ||| ||| Sbjct: 783 acgttgatcttatctaggggctgcccagtgtggtatgctaggtatccattcaggttagcc 724 Query: 342 ttgtggtgcagcatctcattggcctggatctcaaggtcggtctcttgtccttgggctcct 401 ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct: 723 ttgtgatgcagcatctcattagcctggatctcaagatcagtctcttgtccttgggctcct 664 Query: 402 ccaagaggctgatgaatcattattcttgagttaggtaagctgtacctcttccctttcgtg 461 || ||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| || Sbjct: 663 ccgagaggttgatggatcattattcttgagttaggtaagctgtatcgcttcccttttgtc 604 Query: 462 ccgccactaagtagaaaagcacccatacttgcagcaagtccaatacaaactgtggaaaca 521 || ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 603 ccagcactaagcagaaaagctcccatacttgcagcaagtccaatacaaactgtggaaaca 544 Query: 522 tcaggcctaatatgcttcattgtatcaaatatggccatcccagctgtcactgatcctcct 581 ||||| || ||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct: 543 tcaggtctgatatgcttcatcgtgtcgaatatggccatcccagctgtcactgatcctcca 484 Query: 582 ggagagttcacatacataatgatatccttgttaggatcaacggcatccagatatagcagc 641 ||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||| Sbjct: 483 ggagaattcacatacataatgatatccttgttaggatcgatggcatcgagatatagcagc 424 Query: 642 tgcgcaac 649 || ||||| Sbjct: 423 tgggcaac 416
>dbj|AK099107.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031C24, full insert sequence Length = 1098 Score = 595 bits (300), Expect = e-167 Identities = 441/488 (90%) Strand = Plus / Minus Query: 162 catggctaactggaagctggaagtggttgaagtgctttgagaggattcacgattactcca 221 ||||||||||| ||||| ||||| |||||||| ||||| || |||||| ||| |||||| Sbjct: 881 catggctaactagaagcaggaagcggttgaagggctttaaggggattcgtgataactcca 822 Query: 222 tcgataaggccatactccttcgcctccttcgcgctcatgaagaagtcacggtcagtatct 281 || || || ||||||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct: 821 tcaattagaccatactcctttgcctccttcgcgctcatgaagtaatcacggtcagtatct 762 Query: 282 acattgatcttatccaggggctgcccggtgtggtatgctaggtatccgttcaagttggcc 341 || ||||||||||| ||||||||||| |||||||||||||||||||| |||| ||| ||| Sbjct: 761 acgttgatcttatctaggggctgcccagtgtggtatgctaggtatccattcaggttagcc 702 Query: 342 ttgtggtgcagcatctcattggcctggatctcaaggtcggtctcttgtccttgggctcct 401 ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct: 701 ttgtgatgcagcatctcattagcctggatctcaagatcagtctcttgtccttgggctcct 642 Query: 402 ccaagaggctgatgaatcattattcttgagttaggtaagctgtacctcttccctttcgtg 461 || ||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| || Sbjct: 641 ccgagaggttgatggatcattattcttgagttaggtaagctgtatcgcttcccttttgtc 582 Query: 462 ccgccactaagtagaaaagcacccatacttgcagcaagtccaatacaaactgtggaaaca 521 || ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 581 ccagcactaagcagaaaagctcccatacttgcagcaagtccaatacaaactgtggaaaca 522 Query: 522 tcaggcctaatatgcttcattgtatcaaatatggccatcccagctgtcactgatcctcct 581 ||||| || ||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct: 521 tcaggtctgatatgcttcatcgtgtcgaatatggccatcccagctgtcactgatcctcca 462 Query: 582 ggagagttcacatacataatgatatccttgttaggatcaacggcatccagatatagcagc 641 ||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||| Sbjct: 461 ggagaattcacatacataatgatatccttgttaggatcgatggcatcgagatatagcagc 402 Query: 642 tgcgcaac 649 || ||||| Sbjct: 401 tgggcaac 394
>gb|AY104217.1| Zea mays PCO096065 mRNA sequence Length = 817 Score = 365 bits (184), Expect = 1e-97 Identities = 259/284 (91%) Strand = Plus / Minus Query: 162 catggctaactggaagctggaagtggttgaagtgctttgagaggattcacgattactcca 221 |||| ||||||||||||||||||||||||||| || ||||| ||||||| |||||||||| Sbjct: 433 catgactaactggaagctggaagtggttgaagggccttgaggggattcatgattactcca 374 Query: 222 tcgataaggccatactccttcgcctccttcgcgctcatgaagaagtcacggtcagtatct 281 || ||||||||||||||||| || || ||||||||||||||| ||||||||||||||||| Sbjct: 373 tcaataaggccatactcctttgcttctttcgcgctcatgaagtagtcacggtcagtatct 314 Query: 282 acattgatcttatccaggggctgcccggtgtggtatgctaggtatccgttcaagttggcc 341 || ||||||||||||||||||||||| ||||||||||| |||||||| || ||||| ||| Sbjct: 313 accttgatcttatccaggggctgcccagtgtggtatgcaaggtatccatttaagttcgcc 254 Query: 342 ttgtggtgcagcatctcattggcctggatctcaaggtcggtctcttgtccttgggctcct 401 |||||||||||||||||||||||||| |||||||| || ||||| ||||||||||| ||| Sbjct: 253 ttgtggtgcagcatctcattggcctgaatctcaagatcagtctcctgtccttgggcccct 194 Query: 402 ccaagaggctgatgaatcattattcttgagttaggtaagctgta 445 |||||||| ||||| |||||||| |||||||| ||||||||||| Sbjct: 193 ccaagaggttgatggatcattatccttgagtttggtaagctgta 150
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 232 bits (117), Expect = 1e-57 Identities = 183/205 (89%) Strand = Plus / Plus Query: 162 catggctaactggaagctggaagtggttgaagtgctttgagaggattcacgattactcca 221 ||||||||||| ||||| ||||| |||||||| ||||| || ||||||| ||| |||||| Sbjct: 10938830 catggctaactagaagcaggaagcggttgaagggctttaaggggattcatgataactcca 10938889 Query: 222 tcgataaggccatactccttcgcctccttcgcgctcatgaagaagtcacggtcagtatct 281 || || || ||||||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct: 10938890 tcaattagaccatactcctttgcctccttcgcgctcatgaagtaatcacggtcagtatct 10938949 Query: 282 acattgatcttatccaggggctgcccggtgtggtatgctaggtatccgttcaagttggcc 341 || ||||||||||| ||||||||||| |||||||||||||||||||| |||| ||| ||| Sbjct: 10938950 acgttgatcttatctaggggctgcccagtgtggtatgctaggtatccattcaggttagcc 10939009 Query: 342 ttgtggtgcagcatctcattggcct 366 ||||| |||||||||||||| |||| Sbjct: 10939010 ttgtgatgcagcatctcattagcct 10939034 Score = 127 bits (64), Expect = 5e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 364 cctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatgaatcatta 423 ||||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 10939250 cctggatctcaagatcagtctcttgtccttgggctcctccgagaggttgatggatcatta 10939309 Query: 424 ttcttgagttaggtaagctgtacctcttccct 455 |||||||||||||||||||||| | ||||||| Sbjct: 10939310 ttcttgagttaggtaagctgtatcgcttccct 10939341 Score = 107 bits (54), Expect = 5e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 489 cttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgcttcattgtatca 548 |||||||||||||||||||||||||||||||||||||| || ||||||||||| || || Sbjct: 10940122 cttgcagcaagtccaatacaaactgtggaaacatcaggtctgatatgcttcatcgtgtcg 10940181 Query: 549 aatatggccatccc 562 |||||||||||||| Sbjct: 10940182 aatatggccatccc 10940195 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 561 ccagctgtcactgatcctcctggagagttcacatacataatgatatcct 609 |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 10940276 ccagctgtcactgatcctccaggagaattcacatacataatgatatcct 10940324 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 607 ccttgttaggatcaacggcatccagatatagcagctgcgcaac 649 ||||||||||||| | |||||| |||||||||||||| ||||| Sbjct: 10940771 ccttgttaggatcgatggcatcgagatatagcagctgggcaac 10940813
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 232 bits (117), Expect = 1e-57 Identities = 183/205 (89%) Strand = Plus / Minus Query: 162 catggctaactggaagctggaagtggttgaagtgctttgagaggattcacgattactcca 221 ||||||||||| ||||| ||||| |||||||| ||||| || ||||||| ||| |||||| Sbjct: 42199 catggctaactagaagcaggaagcggttgaagggctttaaggggattcatgataactcca 42140 Query: 222 tcgataaggccatactccttcgcctccttcgcgctcatgaagaagtcacggtcagtatct 281 || || || ||||||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct: 42139 tcaattagaccatactcctttgcctccttcgcgctcatgaagtaatcacggtcagtatct 42080 Query: 282 acattgatcttatccaggggctgcccggtgtggtatgctaggtatccgttcaagttggcc 341 || ||||||||||| ||||||||||| |||||||||||||||||||| |||| ||| ||| Sbjct: 42079 acgttgatcttatctaggggctgcccagtgtggtatgctaggtatccattcaggttagcc 42020 Query: 342 ttgtggtgcagcatctcattggcct 366 ||||| |||||||||||||| |||| Sbjct: 42019 ttgtgatgcagcatctcattagcct 41995 Score = 127 bits (64), Expect = 5e-26 Identities = 85/92 (92%) Strand = Plus / Minus Query: 364 cctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatgaatcatta 423 ||||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 41779 cctggatctcaagatcagtctcttgtccttgggctcctccgagaggttgatggatcatta 41720 Query: 424 ttcttgagttaggtaagctgtacctcttccct 455 |||||||||||||||||||||| | ||||||| Sbjct: 41719 ttcttgagttaggtaagctgtatcgcttccct 41688 Score = 107 bits (54), Expect = 5e-20 Identities = 69/74 (93%) Strand = Plus / Minus Query: 489 cttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgcttcattgtatca 548 |||||||||||||||||||||||||||||||||||||| || ||||||||||| || || Sbjct: 40907 cttgcagcaagtccaatacaaactgtggaaacatcaggtctgatatgcttcatcgtgtcg 40848 Query: 549 aatatggccatccc 562 |||||||||||||| Sbjct: 40847 aatatggccatccc 40834 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 561 ccagctgtcactgatcctcctggagagttcacatacataatgatatcct 609 |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 40753 ccagctgtcactgatcctccaggagaattcacatacataatgatatcct 40705 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 607 ccttgttaggatcaacggcatccagatatagcagctgcgcaac 649 ||||||||||||| | |||||| |||||||||||||| ||||| Sbjct: 40258 ccttgttaggatcgatggcatcgagatatagcagctgggcaac 40216
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 232 bits (117), Expect = 1e-57 Identities = 183/205 (89%) Strand = Plus / Plus Query: 162 catggctaactggaagctggaagtggttgaagtgctttgagaggattcacgattactcca 221 ||||||||||| ||||| ||||| |||||||| ||||| || ||||||| ||| |||||| Sbjct: 10936931 catggctaactagaagcaggaagcggttgaagggctttaaggggattcatgataactcca 10936990 Query: 222 tcgataaggccatactccttcgcctccttcgcgctcatgaagaagtcacggtcagtatct 281 || || || ||||||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct: 10936991 tcaattagaccatactcctttgcctccttcgcgctcatgaagtaatcacggtcagtatct 10937050 Query: 282 acattgatcttatccaggggctgcccggtgtggtatgctaggtatccgttcaagttggcc 341 || ||||||||||| ||||||||||| |||||||||||||||||||| |||| ||| ||| Sbjct: 10937051 acgttgatcttatctaggggctgcccagtgtggtatgctaggtatccattcaggttagcc 10937110 Query: 342 ttgtggtgcagcatctcattggcct 366 ||||| |||||||||||||| |||| Sbjct: 10937111 ttgtgatgcagcatctcattagcct 10937135 Score = 127 bits (64), Expect = 5e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 364 cctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatgaatcatta 423 ||||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 10937351 cctggatctcaagatcagtctcttgtccttgggctcctccgagaggttgatggatcatta 10937410 Query: 424 ttcttgagttaggtaagctgtacctcttccct 455 |||||||||||||||||||||| | ||||||| Sbjct: 10937411 ttcttgagttaggtaagctgtatcgcttccct 10937442 Score = 107 bits (54), Expect = 5e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 489 cttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgcttcattgtatca 548 |||||||||||||||||||||||||||||||||||||| || ||||||||||| || || Sbjct: 10938223 cttgcagcaagtccaatacaaactgtggaaacatcaggtctgatatgcttcatcgtgtcg 10938282 Query: 549 aatatggccatccc 562 |||||||||||||| Sbjct: 10938283 aatatggccatccc 10938296 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 561 ccagctgtcactgatcctcctggagagttcacatacataatgatatcct 609 |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 10938377 ccagctgtcactgatcctccaggagaattcacatacataatgatatcct 10938425 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 607 ccttgttaggatcaacggcatccagatatagcagctgcgcaac 649 ||||||||||||| | |||||| |||||||||||||| ||||| Sbjct: 10938872 ccttgttaggatcgatggcatcgagatatagcagctgggcaac 10938914
>ref|NM_100137.2| Arabidopsis thaliana CLPP5 (NUCLEAR ENCODED CLP PROTEASE 1); endopeptidase Clp AT1G02560 (CLPP5) mRNA, complete cds Length = 1313 Score = 186 bits (94), Expect = 6e-44 Identities = 367/458 (80%) Strand = Plus / Minus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||| || || ||||| ||||| |||| ||| || || |||||||| |||||| Sbjct: 1002 gctgcaagtggctggagagctttaagagggttcatgataacaccgtcgataagtccatac 943 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatcc 296 || || || || || || ||||||||||| |||||||| || || || ||||| ||| Sbjct: 942 tcttttgcttctttggcactcatgaagaaatcacggtctgtgtcctggtttatcttctcc 883 Query: 297 aggggctgcccggtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatc 356 ||| || || ||||||||||| ||||| ||||| | ||| |||||||| |||||||| Sbjct: 882 aggctttgaccagtgtggtatgcgaggtaaccgtttaggtttgccttgtgatgcagcatt 823 Query: 357 tcattggcctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatga 416 ||||| ||||| || |||| |||||| | ||||| ||||| ||||| |||||||| Sbjct: 822 tcatttgcctgaatgtcaatgtcggtttggccaccttgagctccaccaagcggctgatgg 763 Query: 417 atcattattcttgagttaggtaagctgtacctcttccctttcgtgccgccactaagtaga 476 |||||||| |||||||| |||| ||||| || || ||||| || || ||||||| ||| Sbjct: 762 atcattatccttgagtttggtagactgtatctttttcctttggttccagcactaagcaga 703 Query: 477 aaagcacccatacttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgc 536 ||||| |||||||| ||||| || |||| |||||| ||||| |||||||||| || ||| Sbjct: 702 aaagctcccatactagcagctagaccaacacaaacagtggacacatcaggccggatgtgc 643 Query: 537 ttcattgtatcaaatatggccatcccagctgtcactgatcctcctggagagttcacatac 596 |||| ||||| ||||| ||||| |||||||| |||||||| || ||||| || |||||| Sbjct: 642 ctcatagtatcgaatatagccatgccagctgtaactgatccaccaggagaattaacatac 583 Query: 597 ataatgatatccttgttaggatcaacggcatccagata 634 || | |||||||| |||||||||| ||||| ||||| Sbjct: 582 atgacaatatccttagtaggatcaacagcatcaagata 545
>emb|AJ012278.1|ATH012278 Arabidopsis thaliana mRNA for ATP-dependent Clp protease subunit (clpP) Length = 1001 Score = 186 bits (94), Expect = 6e-44 Identities = 367/458 (80%) Strand = Plus / Minus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||| || || ||||| ||||| |||| ||| || || |||||||| |||||| Sbjct: 913 gctgcaagtggctggagagctttaagagggttcatgataacaccgtcgataagtccatac 854 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatcc 296 || || || || || || ||||||||||| |||||||| || || || ||||| ||| Sbjct: 853 tcttttgcttctttggcactcatgaagaaatcacggtctgtgtcctggtttatcttctcc 794 Query: 297 aggggctgcccggtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatc 356 ||| || || ||||||||||| ||||| ||||| | ||| |||||||| |||||||| Sbjct: 793 aggctttgaccagtgtggtatgcgaggtaaccgtttaggtttgccttgtgatgcagcatt 734 Query: 357 tcattggcctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatga 416 ||||| ||||| || |||| |||||| | ||||| ||||| ||||| |||||||| Sbjct: 733 tcatttgcctgaatgtcaatgtcggtttggccaccttgagctccaccaagcggctgatgg 674 Query: 417 atcattattcttgagttaggtaagctgtacctcttccctttcgtgccgccactaagtaga 476 |||||||| |||||||| |||| ||||| || || ||||| || || ||||||| ||| Sbjct: 673 atcattatccttgagtttggtagactgtatctttttcctttggttccagcactaagcaga 614 Query: 477 aaagcacccatacttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgc 536 ||||| |||||||| ||||| || |||| |||||| ||||| |||||||||| || ||| Sbjct: 613 aaagctcccatactagcagctagaccaacacaaacagtggacacatcaggccggatgtgc 554 Query: 537 ttcattgtatcaaatatggccatcccagctgtcactgatcctcctggagagttcacatac 596 |||| ||||| ||||| ||||| |||||||| |||||||| || ||||| || |||||| Sbjct: 553 ctcatagtatcgaatatagccatgccagctgtaactgatccaccaggagaattaacatac 494 Query: 597 ataatgatatccttgttaggatcaacggcatccagata 634 || | |||||||| |||||||||| ||||| ||||| Sbjct: 493 atgacaatatccttagtaggatcaacagcatcaagata 456
>emb|BX815808.1|CNS0ABFF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS9ZH04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1185 Score = 186 bits (94), Expect = 6e-44 Identities = 367/458 (80%) Strand = Plus / Minus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||| || || ||||| ||||| |||| ||| || || |||||||| |||||| Sbjct: 976 gctgcaagtggctggagagctttaagagggttcatgataacaccgtcgataagtccatac 917 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatcc 296 || || || || || || ||||||||||| |||||||| || || || ||||| ||| Sbjct: 916 tcttttgcttctttggcactcatgaagaaatcacggtctgtgtcctggtttatcttctcc 857 Query: 297 aggggctgcccggtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatc 356 ||| || || ||||||||||| ||||| ||||| | ||| |||||||| |||||||| Sbjct: 856 aggctttgaccagtgtggtatgcgaggtaaccgtttaggtttgccttgtgatgcagcatt 797 Query: 357 tcattggcctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatga 416 ||||| ||||| || |||| |||||| | ||||| ||||| ||||| |||||||| Sbjct: 796 tcatttgcctgaatgtcaatgtcggtttggccaccttgagctccaccaagcggctgatgg 737 Query: 417 atcattattcttgagttaggtaagctgtacctcttccctttcgtgccgccactaagtaga 476 |||||||| |||||||| |||| ||||| || || ||||| || || ||||||| ||| Sbjct: 736 atcattatccttgagtttggtagactgtatctttttcctttggttccagcactaagcaga 677 Query: 477 aaagcacccatacttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgc 536 ||||| |||||||| ||||| || |||| |||||| ||||| |||||||||| || ||| Sbjct: 676 aaagctcccatactagcagctagaccaacacaaacagtggacacatcaggccggatgtgc 617 Query: 537 ttcattgtatcaaatatggccatcccagctgtcactgatcctcctggagagttcacatac 596 |||| ||||| ||||| ||||| |||||||| |||||||| || ||||| || |||||| Sbjct: 616 ctcatagtatcgaatatagccatgccagctgtaactgatccaccaggagaattaacatac 557 Query: 597 ataatgatatccttgttaggatcaacggcatccagata 634 || | |||||||| |||||||||| ||||| ||||| Sbjct: 556 atgacaatatccttagtaggatcaacagcatcaagata 519
>emb|BX841822.1|CNS09Y3C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS43ZC08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1127 Score = 186 bits (94), Expect = 6e-44 Identities = 367/458 (80%) Strand = Plus / Minus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||| || || ||||| ||||| | || ||| || || |||||||| |||||| Sbjct: 963 gctgcaagtggctggagagctttaagagggtgcatgataacaccgtcgataagtccatac 904 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatcc 296 || || || || || || ||||||||||| |||||||| || || || ||||| ||| Sbjct: 903 tcttttgcttctttggcactcatgaagaaatcacggtctgtgtcctggtttatcttctcc 844 Query: 297 aggggctgcccggtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatc 356 ||| || || ||||||||||| ||||| ||||| | ||| |||||||| ||||||||| Sbjct: 843 aggctttgaccagtgtggtatgcgaggtaaccgtttaggtttgccttgtgatgcagcatc 784 Query: 357 tcattggcctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatga 416 ||||| ||||| || |||| |||||| | ||||| ||||| ||||| |||||||| Sbjct: 783 tcatttgcctgaatgtcaatgtcggtttggccaccttgagctccaccaagcggctgatgg 724 Query: 417 atcattattcttgagttaggtaagctgtacctcttccctttcgtgccgccactaagtaga 476 |||||||| |||||||| |||| ||||| || || ||||| || || ||||||| ||| Sbjct: 723 atcattatccttgagtttggtagactgtatctttttcctttggttccagcactaagcaga 664 Query: 477 aaagcacccatacttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgc 536 ||||| |||||||| ||||| || |||| |||||| ||||| |||||||||| || ||| Sbjct: 663 aaagctcccatactagcagctagaccaacacaaacagtggacacatcaggccggatgtgc 604 Query: 537 ttcattgtatcaaatatggccatcccagctgtcactgatcctcctggagagttcacatac 596 |||| ||||| ||||| ||||| |||||||| |||||||| || ||||| || |||||| Sbjct: 603 ctcatagtatcgaatatagccatgccagctgtaactgatccaccaggagaattaacatac 544 Query: 597 ataatgatatccttgttaggatcaacggcatccagata 634 || | |||||||| |||||||||| ||||| ||||| Sbjct: 543 atgacaatatccttagtaggatcaacagcatcaagata 506
>gb|AY084394.1| Arabidopsis thaliana clone 106825 mRNA, complete sequence Length = 1302 Score = 186 bits (94), Expect = 6e-44 Identities = 367/458 (80%) Strand = Plus / Minus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||| || || ||||| ||||| |||| ||| || || |||||||| |||||| Sbjct: 991 gctgcaagtggctggagagctttaagagggttcatgataacaccgtcgataagtccatac 932 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatcc 296 || || || || || || ||||||||||| |||||||| || || || ||||| ||| Sbjct: 931 tcttttgcttctttggcactcatgaagaaatcacggtctgtgtcctggtttatcttctcc 872 Query: 297 aggggctgcccggtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatc 356 ||| || || ||||||||||| ||||| ||||| | ||| |||||||| |||||||| Sbjct: 871 aggctttgaccagtgtggtatgcgaggtaaccgtttaggtttgccttgtgatgcagcatt 812 Query: 357 tcattggcctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatga 416 ||||| ||||| || |||| |||||| | ||||| ||||| ||||| |||||||| Sbjct: 811 tcatttgcctgaatgtcaatgtcggtttggccaccttgagctccaccaagcggctgatgg 752 Query: 417 atcattattcttgagttaggtaagctgtacctcttccctttcgtgccgccactaagtaga 476 |||||||| |||||||| |||| ||||| || || ||||| || || ||||||| ||| Sbjct: 751 atcattatccttgagtttggtagactgtatctttttcctttggttccagcactaagcaga 692 Query: 477 aaagcacccatacttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgc 536 ||||| |||||||| ||||| || |||| |||||| ||||| |||||||||| || ||| Sbjct: 691 aaagctcccatactagcagctagaccaacacaaacagtggacacatcaggccggatgtgc 632 Query: 537 ttcattgtatcaaatatggccatcccagctgtcactgatcctcctggagagttcacatac 596 |||| ||||| ||||| ||||| |||||||| |||||||| || ||||| || |||||| Sbjct: 631 ctcatagtatcgaatatagccatgccagctgtaactgatccaccaggagaattaacatac 572 Query: 597 ataatgatatccttgttaggatcaacggcatccagata 634 || | |||||||| |||||||||| ||||| ||||| Sbjct: 571 atgacaatatccttagtaggatcaacagcatcaagata 534
>dbj|AB022326.1| Arabidopsis thaliana mRNA for nClpP1 (nuclear encoded ClpP1), complete cds Length = 1090 Score = 186 bits (94), Expect = 6e-44 Identities = 367/458 (80%) Strand = Plus / Minus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||| || || ||||| ||||| |||| ||| || || |||||||| |||||| Sbjct: 943 gctgcaagtggctggagagctttaagagggttcatgataacaccgtcgataagtccatac 884 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatcc 296 || || || || || || ||||||||||| |||||||| || || || ||||| ||| Sbjct: 883 tcttttgcttctttggcactcatgaagaaatcacggtctgtgtcctggtttatcttctcc 824 Query: 297 aggggctgcccggtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatc 356 ||| || || ||||||||||| ||||| ||||| | ||| |||||||| |||||||| Sbjct: 823 aggctttgaccagtgtggtatgcgaggtaaccgtttaggtttgccttgtgatgcagcatt 764 Query: 357 tcattggcctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatga 416 ||||| ||||| || |||| |||||| | ||||| ||||| ||||| |||||||| Sbjct: 763 tcatttgcctgaatgtcaatgtcggtttggccaccttgagctccaccaagcggctgatgg 704 Query: 417 atcattattcttgagttaggtaagctgtacctcttccctttcgtgccgccactaagtaga 476 |||||||| |||||||| |||| ||||| || || ||||| || || ||||||| ||| Sbjct: 703 atcattatccttgagtttggtagactgtatctttttcctttggttccagcactaagcaga 644 Query: 477 aaagcacccatacttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgc 536 ||||| |||||||| ||||| || |||| |||||| ||||| |||||||||| || ||| Sbjct: 643 aaagctcccatactagcagctagaccaacacaaacagtggacacatcaggccggatgtgc 584 Query: 537 ttcattgtatcaaatatggccatcccagctgtcactgatcctcctggagagttcacatac 596 |||| ||||| ||||| ||||| |||||||| |||||||| || ||||| || |||||| Sbjct: 583 ctcatagtatcgaatatagccatgccagctgtaactgatccaccaggagaattaacatac 524 Query: 597 ataatgatatccttgttaggatcaacggcatccagata 634 || | |||||||| |||||||||| ||||| ||||| Sbjct: 523 atgacaatatccttagtaggatcaacagcatcaagata 486
>gb|BT024859.1| Arabidopsis thaliana At1g02560 gene, complete cds Length = 897 Score = 178 bits (90), Expect = 2e-41 Identities = 357/446 (80%) Strand = Plus / Minus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||| || || ||||| ||||| |||| ||| || || |||||||| |||||| Sbjct: 890 gctgcaagtggctggagagctttaagagggttcatgataacaccgtcgataagtccatac 831 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatcc 296 || || || || || || ||||||||||| |||||||| || || || ||||| ||| Sbjct: 830 tcttttgcttctttggcactcatgaagaaatcacggtctgtgtcctggtttatcttctcc 771 Query: 297 aggggctgcccggtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatc 356 ||| || || ||||||||||| ||||| ||||| | ||| |||||||| |||||||| Sbjct: 770 aggctttgaccagtgtggtatgcgaggtaaccgtttaggtttgccttgtgatgcagcatt 711 Query: 357 tcattggcctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatga 416 ||||| ||||| || |||| |||||| | ||||| ||||| ||||| |||||||| Sbjct: 710 tcatttgcctgaatgtcaatgtcggtttggccaccttgagctccaccaagcggctgatgg 651 Query: 417 atcattattcttgagttaggtaagctgtacctcttccctttcgtgccgccactaagtaga 476 |||||||| |||||||| |||| ||||| || || ||||| || || ||||||| ||| Sbjct: 650 atcattatccttgagtttggtagactgtatctttttcctttggttccagcactaagcaga 591 Query: 477 aaagcacccatacttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgc 536 ||||| |||||||| ||||| || |||| |||||| ||||| |||||||||| || ||| Sbjct: 590 aaagctcccatactagcagctagaccaacacaaacagtggacacatcaggccggatgtgc 531 Query: 537 ttcattgtatcaaatatggccatcccagctgtcactgatcctcctggagagttcacatac 596 |||| ||||| ||||| ||||| |||||||| |||||||| || ||||| || |||||| Sbjct: 530 ctcatagtatcgaatatagccatgccagctgtaactgatccaccaggagaattaacatac 471 Query: 597 ataatgatatccttgttaggatcaac 622 || | |||||||| |||||||||| Sbjct: 470 atgacaatatccttagtaggatcaac 445
>emb|BX817257.1|CNS0ABP7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH9ZC01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1133 Score = 155 bits (78), Expect = 2e-34 Identities = 265/326 (81%), Gaps = 1/326 (0%) Strand = Plus / Minus Query: 309 gtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatctcattggcctgg 368 ||||||||||| ||||| ||||| | ||| |||||||| |||||||| ||||| ||||| Sbjct: 841 gtgtggtatgcgaggtaaccgtttaggtttgccttgtgatgcagcatttcatttgcctga 782 Query: 369 atctcaaggtcggtctcttgtccttgggctcctccaagaggctgatgaatcattattctt 428 || |||| |||||| | ||||| ||||| ||||| |||||||| |||||||| ||| Sbjct: 781 atgtcaatgtcggtttggccaccttgagctccaccaagcggctgatggatcattatcctt 722 Query: 429 gagttaggtaagctgtacctcttccctttcgtgccgccactaagtagaaaagcacccata 488 ||||| |||| ||||| || || ||||| || || ||||||| |||||||| |||||| Sbjct: 721 gagtttggtagactgtatctttttcctttggttccagcactaagcagaaaagctcccata 662 Query: 489 cttgcagcaagtccaatacaaactgtggaaacatcaggcctaatatgcttcattgtatca 548 || ||||| || |||| |||||| ||||| |||||| ||| || ||| |||| ||||| Sbjct: 661 ctagcagctagaccaacacaaacagtggacacatca-gccggatgtgcctcatagtatcg 603 Query: 549 aatatggccatcccagctgtcactgatcctcctggagagttcacatacataatgatatcc 608 ||||| ||||| |||||||| |||||||| || ||||| || |||||||| | |||||| Sbjct: 602 aatatagccatgccagctgtaactgatccaccaggagaattaacatacatgacaatatcc 543 Query: 609 ttgttaggatcaacggcatccagata 634 || |||||||||| ||||| ||||| Sbjct: 542 ttagtaggatcaacagcatcaagata 517
>gb|BT013194.1| Lycopersicon esculentum clone 134346R, mRNA sequence Length = 1161 Score = 121 bits (61), Expect = 3e-24 Identities = 199/245 (81%) Strand = Plus / Minus Query: 405 agaggctgatgaatcattattcttgagttaggtaagctgtacctcttccctttcgtgccg 464 |||||||| ||||||||||| ||||| || || ||||| || ||||||||||| ||||| Sbjct: 703 agaggctggtgaatcattatccttgaatttggcaagctatatctcttccctttagtgcca 644 Query: 465 ccactaagtagaaaagcacccatacttgcagcaagtccaatacaaactgtggaaacatca 524 |||| || |||||||| |||||||||||||| ||||||| ||| || || || ||||| Sbjct: 643 gcactgagaagaaaagcccccatacttgcagcgagtccaacacagacagttgagacatcg 584 Query: 525 ggcctaatatgcttcattgtatcaaatatggccatcccagctgtcactgatcctcctgga 584 || | |||||| ||| |||||||| | ||||| || ||||| ||||| ||||||||| Sbjct: 583 ggtcgaatatgtcgcatggtatcaaaaacagccattcctgctgttactgaccctcctgga 524 Query: 585 gagttcacatacataatgatatccttgttaggatcaacggcatccagatatagcagctgc 644 || || |||||||||| || ||||| | |||||||| ||||| ||||| || ||||| Sbjct: 523 gaattgacatacataacaatgtcctttgtgggatcaacagcatcaagataaagaagctga 464 Query: 645 gcaac 649 ||||| Sbjct: 463 gcaac 459 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||||||||| ||||| | ||||||| ||| || |||||||| || || ||| Sbjct: 931 gctgcaagtggttgaagggctttcattggattcatgatgacaccatcgattagcccgtac 872 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatc 280 ||||| || ||||| ||||||||||| || ||||| |||||||| Sbjct: 871 tccttagcttcctttgcgctcatgaaaaaatcacgatcagtatc 828
>emb|AJ308540.1|LES308540 Lycopersicon esculentum mRNA for Clp protease 2 proteolytic subunit (clpP2 gene) Length = 1172 Score = 121 bits (61), Expect = 3e-24 Identities = 199/245 (81%) Strand = Plus / Minus Query: 405 agaggctgatgaatcattattcttgagttaggtaagctgtacctcttccctttcgtgccg 464 |||||||| ||||||||||| ||||| || || ||||| || ||||||||||| ||||| Sbjct: 712 agaggctggtgaatcattatccttgaatttggcaagctatatctcttccctttagtgcca 653 Query: 465 ccactaagtagaaaagcacccatacttgcagcaagtccaatacaaactgtggaaacatca 524 |||| || |||||||| |||||||||||||| ||||||| ||| || || || ||||| Sbjct: 652 gcactgagaagaaaagcccccatacttgcagcgagtccaacacagacagttgagacatcg 593 Query: 525 ggcctaatatgcttcattgtatcaaatatggccatcccagctgtcactgatcctcctgga 584 || | |||||| ||| |||||||| | ||||| || ||||| ||||| ||||||||| Sbjct: 592 ggtcgaatatgtcgcatggtatcaaaaacagccattcctgctgttactgaccctcctgga 533 Query: 585 gagttcacatacataatgatatccttgttaggatcaacggcatccagatatagcagctgc 644 || || |||||||||| || ||||| | |||||||| ||||| ||||| || ||||| Sbjct: 532 gaattgacatacataacaatgtcctttgtgggatcaacagcatcaagataaagaagctga 473 Query: 645 gcaac 649 ||||| Sbjct: 472 gcaac 468 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||||||||| ||||| | ||||||| ||| || |||||||| || || ||| Sbjct: 940 gctgcaagtggttgaagggctttcattggattcatgatgacaccatcgattagcccgtac 881 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatc 280 ||||| || ||||| ||||||||||| || ||||| |||||||| Sbjct: 880 tccttagcttcctttgcgctcatgaaaaaatcacgatcagtatc 837
>gb|AC022521.4|AC022521 Arabidopsis thaliana chromosome I BAC T14P4 genomic sequence, complete sequence Length = 121668 Score = 71.9 bits (36), Expect = 3e-09 Identities = 153/192 (79%) Strand = Plus / Plus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||| || || ||||| ||||| |||| ||| || || |||||||| |||||| Sbjct: 78040 gctgcaagtggctggagagctttaagagggttcatgataacaccgtcgataagtccatac 78099 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatcc 296 || || || || || || ||||||||||| |||||||| || || || ||||| ||| Sbjct: 78100 tcttttgcttctttggcactcatgaagaaatcacggtctgtgtcctggtttatcttctcc 78159 Query: 297 aggggctgcccggtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatc 356 ||| || || ||||||||||| ||||| ||||| | ||| |||||||| |||||||| Sbjct: 78160 aggctttgaccagtgtggtatgcgaggtaaccgtttaggtttgccttgtgatgcagcatt 78219 Query: 357 tcattggcctgg 368 ||||| |||||| Sbjct: 78220 tcatttgcctgg 78231
>emb|BX814663.1|CNS0ACAC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB88ZB06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1448 Score = 67.9 bits (34), Expect = 4e-08 Identities = 205/262 (78%) Strand = Plus / Minus Query: 177 gctggaagtggttgaagtgctttgagaggattcacgattactccatcgataaggccatac 236 |||| |||||| || || ||||| ||||| |||| ||| || || |||||||| |||||| Sbjct: 1322 gctgcaagtggctggagagctttaagagggttcatgataacaccgtcgataagtccatac 1263 Query: 237 tccttcgcctccttcgcgctcatgaagaagtcacggtcagtatctacattgatcttatcc 296 || || || || || || ||||||||||| |||||||| || || || ||||| ||| Sbjct: 1262 tcttttgcttctttggcactcatgaagaaatcacggtctgtgtcctggtttatcttctcc 1203 Query: 297 aggggctgcccggtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatc 356 ||| || || ||||||||||| ||| | ||||| | ||| || ||||| |||||||| Sbjct: 1202 aggctttgaccagtgtggtatgcgagggaaccgtttaggtttgcgttgtgatgcagcatt 1143 Query: 357 tcattggcctggatctcaaggtcggtctcttgtccttgggctcctccaagaggctgatga 416 ||||| || || || |||| |||||| | ||||| ||||| ||||| |||||||| Sbjct: 1142 tcatttgcgtgaatgtcaatgtcggtttgggcaccttgagctccaccaagcggctgatgg 1083 Query: 417 atcattattcttgagttaggta 438 |||||||| |||||||| |||| Sbjct: 1082 atcattatccttgagtttggta 1061
>emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; segment 5/5 Length = 262202 Score = 58.0 bits (29), Expect = 4e-05 Identities = 94/113 (83%), Gaps = 2/113 (1%) Strand = Plus / Minus Query: 385 cttgtccttgggctcctccaagaggctgatgaatcattattcttgagttaggt-aagctg 443 |||| ||||| || |||||||| || || |||||||||||||| || |||||| ||||| Sbjct: 192266 cttggccttgagcacctccaagtggttggtgaatcattattctcgaattaggtaaagct- 192208 Query: 444 tacctcttccctttcgtgccgccactaagtagaaaagcacccatacttgcagc 496 |||| |||||||||| || |||||||| || || || |||||||||||||| Sbjct: 192207 aaccttttccctttcgcccccccactaaggaggaatgcccccatacttgcagc 192155
>gb|AC151956.5| Medicago truncatula clone mth2-52p17, complete sequence Length = 120704 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 189 tgaagtgctttgagaggattcacgattactccatcgataaggccatactccttcgcctcc 248 ||||| |||||||||||||||| ||| || |||||||| || ||||| || || || || Sbjct: 1396 tgaagagctttgagaggattcatgatgacaccatcgatgagtccatattctttggcttct 1337 Query: 249 ttcgcgctcatgaagaagtcacggtcagtatc 280 || || |||||||| || |||||||| ||||| Sbjct: 1336 tttgcactcatgaaaaaatcacggtctgtatc 1305 Score = 44.1 bits (22), Expect = 0.57 Identities = 37/42 (88%) Strand = Plus / Minus Query: 402 ccaagaggctgatgaatcattattcttgagttaggtaagctg 443 ||||| || |||||||||||||| |||||||| || |||||| Sbjct: 481 ccaagtggttgatgaatcattatccttgagtttggcaagctg 440
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 385 cttgtccttgggctcctccaagaggctgatgaatcattattcttgagttaggtaa 439 |||| ||||| || ||||||||||||||||||||||| || || || |||||||| Sbjct: 1639353 cttgaccttgtgcacctccaagaggctgatgaatcatgatcctagaattaggtaa 1639299 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattattcttga 430 |||||||| || |||||||||||||||||||| Sbjct: 695764 cctccaagtggttgatgaatcattattcttga 695733 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 398 tcctccaagaggctgatgaatcattattct 427 ||||||||| || ||||||||||||||||| Sbjct: 1327959 tcctccaaggggttgatgaatcattattct 1327930
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 385 cttgtccttgggctcctccaagaggctgatgaatcattattct 427 |||| ||||| ||||| |||||||| ||||||||||||||||| Sbjct: 1210301 cttgaccttgagctccaccaagaggttgatgaatcattattct 1210259 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattattcttga 430 ||||| || ||||||||||||||||||||||| Sbjct: 280480 cctcccagtggctgatgaatcattattcttga 280449 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 474 agaaaagcacccatacttgcagcaagtccaatacaaac 511 ||||| || |||||||||||||| ||||||| |||||| Sbjct: 280405 agaaaggcgcccatacttgcagctagtccaacacaaac 280368
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 385 cttgtccttgggctcctccaagaggctgatgaatcattattcttg 429 |||||||||| || || |||||||| ||||||||||| ||||||| Sbjct: 2122474 cttgtccttgagcaccgccaagaggttgatgaatcataattcttg 2122518
>emb|BX814483.1|CNS0AC76 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB76ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1154 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 309 gtgtggtatgctaggtatccgttcaagttggccttgtggtgcagcatctcatt 361 ||||||||||||||||| ||||| | ||| ||||||| |||||||| ||||| Sbjct: 797 gtgtggtatgctaggtaaccgtttaggttttccttgtgatgcagcatttcatt 745 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 222 tcgataaggccatactccttcgcctccttcgcgctcatgaagaagtcacggtc 274 |||||||| |||||||| || || || || || ||||||||||| |||||||| Sbjct: 884 tcgataagtccatactcttttgcttctttggcactcatgaagaaatcacggtc 832
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Plus Query: 222 tcgataaggccatactccttcgcc 245 |||||||||||||||||||||||| Sbjct: 1699485 tcgataaggccatactccttcgcc 1699508
>emb|BX572092.1| Prochlorococcus marinus MED4 complete genome; segment 3/5 Length = 348178 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattattcttga 430 ||||||||||| ||||||||||| |||||||| Sbjct: 4944 cctccaagaggttgatgaatcatgattcttga 4913
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Minus Query: 466 cactaagtagaaaagcacccatacttgc 493 ||||||| |||||||||||||||||||| Sbjct: 1470552 cactaaggagaaaagcacccatacttgc 1470525
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 385 cttgtccttgggctcctccaagaggctgatgaatcattattcttgagttaggtaag 440 |||| ||||| || || |||||||| || ||||||||||||||||| || |||||| Sbjct: 1673735 cttgaccttgagcaccaccaagaggttggtgaatcattattcttgaatttggtaag 1673680 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 aaagcacccatacttgcagc 496 |||||||||||||||||||| Sbjct: 835557 aaagcacccatacttgcagc 835538
>ref|XM_781799.1| PREDICTED: Strongylocentrotus purpuratus similar to Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor (Endopeptidase Clp) (LOC581816), mRNA Length = 774 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 408 ggctgatgaatcattattcttgagttaggta 438 |||||||||| ||| |||||||||||||||| Sbjct: 518 ggctgatgaaccatgattcttgagttaggta 488
>gb|AF423176.1|AF423176 Cyanothece sp. PCC 8801 hypothetical protein gene, complete cds Length = 2398 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 555 gccatcccagctgtcactgatcctcctggagagtt 589 |||||||| || ||||||||||| ||||||||||| Sbjct: 1928 gccatccccgcagtcactgatccccctggagagtt 1894
>gb|AF423175.1|AF423175 Cyanothece sp. PCC 8801 putative ATP-dependent Clp proteinase gene, complete cds Length = 2398 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 555 gccatcccagctgtcactgatcctcctggagagtt 589 |||||||| || ||||||||||| ||||||||||| Sbjct: 1928 gccatccccgcagtcactgatccccctggagagtt 1894
>emb|AJ606044.1| Oenococcus oeni clpP gene and clpL gene Length = 3600 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 537 ttcattgtatcaaatatggccatcccagctgtcactgatcctcctgg 583 ||||||||||||| || ||||| ||||| || |||||||||||||| Sbjct: 481 ttcattgtatcaacgattgccataccagcggtaactgatcctcctgg 435
>ref|NM_123907.2| Arabidopsis thaliana CLPP4; endopeptidase Clp AT5G45390 (CLPP4) mRNA, complete cds Length = 1267 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattat 424 ||||||||||| |||||||||||||| Sbjct: 611 cctccaagaggttgatgaatcattat 586
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 408 ggctgatgaatcattattcttgagttaggtaagc 441 |||||||| ||||| | ||||||||||||||||| Sbjct: 2084450 ggctgatgtatcataactcttgagttaggtaagc 2084483
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 408 ggctgatgaatcattattcttgagttaggtaagc 441 |||||||| ||||| | ||||||||||||||||| Sbjct: 2069650 ggctgatgtatcataactcttgagttaggtaagc 2069683
>emb|AJ000930.1|ATJ000930 Arabidopsis thaliana, mRNA for nuclear-encoded ClpP proteolytic subunit Length = 959 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattat 424 ||||||||||| |||||||||||||| Sbjct: 565 cctccaagaggttgatgaatcattat 540
>gb|BT006321.1| Arabidopsis thaliana At5g45390 mRNA, complete cds Length = 879 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattat 424 ||||||||||| |||||||||||||| Sbjct: 563 cctccaagaggttgatgaatcattat 538
>gb|AY042832.1| Arabidopsis thaliana ATP-dependent Clp protease-like protein (MFC19.5) mRNA, complete cds Length = 1186 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattat 424 ||||||||||| |||||||||||||| Sbjct: 608 cctccaagaggttgatgaatcattat 583
>emb|BX829967.1|CNS0A042 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB4ZG01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1107 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattat 424 ||||||||||| |||||||||||||| Sbjct: 559 cctccaagaggttgatgaatcattat 534
>gb|AY087717.1| Arabidopsis thaliana clone 37901 mRNA, complete sequence Length = 1197 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattat 424 ||||||||||| |||||||||||||| Sbjct: 611 cctccaagaggttgatgaatcattat 586
>dbj|AB022329.1| Arabidopsis thaliana mRNA for nClpP4 (nuclear encoded ClpP4), partial cds Length = 1183 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattat 424 ||||||||||| |||||||||||||| Sbjct: 586 cctccaagaggttgatgaatcattat 561
>dbj|AB018113.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC19 Length = 85020 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 399 cctccaagaggctgatgaatcattat 424 ||||||||||| |||||||||||||| Sbjct: 16676 cctccaagaggttgatgaatcattat 16651
>dbj|AP006137.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT37K17, TM0239, complete sequence Length = 106506 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Plus Query: 561 ccagctgtcactgatcctcctggagagttcacatacat 598 |||||||| || |||||||||||||| || |||||||| Sbjct: 92307 ccagctgtaaccgatcctcctggagaatttacatacat 92344 Score = 40.1 bits (20), Expect = 8.9 Identities = 65/80 (81%) Strand = Plus / Plus Query: 195 gctttgagaggattcacgattactccatcgataaggccatactccttcgcctccttcgcg 254 |||||||||||||||| || || ||||| || || ||||| || || || || || ||| Sbjct: 90467 gctttgagaggattcataatgacaccatctatgagtccatattctttggcttcttttgcg 90526 Query: 255 ctcatgaagaagtcacggtc 274 |||||||| || |||||||| Sbjct: 90527 ctcatgaaaaaatcacggtc 90546
>gb|CP000013.1| Borrelia garinii PBi, complete genome Length = 904246 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 407 aggctgatgaatcattattct 427 ||||||||||||||||||||| Sbjct: 640277 aggctgatgaatcattattct 640257
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 257 catgaagaagtcacggtcagtatct 281 ||||||||| ||||||||||||||| Sbjct: 1021983 catgaagaaatcacggtcagtatct 1021959
>ref|NM_027290.1| Mus musculus minichromosome maintenance deficient 10 (S. cerevisiae) (Mcm10), mRNA Length = 3415 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 ttacaaaagcatctagccaga 81 ||||||||||||||||||||| Sbjct: 1754 ttacaaaagcatctagccaga 1774
>gb|BC064314.1| Mus musculus minichromosome maintenance deficient 10 (S. cerevisiae), mRNA (cDNA clone IMAGE:6826945) Length = 3879 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 ttacaaaagcatctagccaga 81 ||||||||||||||||||||| Sbjct: 2172 ttacaaaagcatctagccaga 2192
>gb|BC023236.1| Mus musculus minichromosome maintenance deficient 10 (S. cerevisiae), mRNA (cDNA clone IMAGE:4209759) Length = 2371 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 ttacaaaagcatctagccaga 81 ||||||||||||||||||||| Sbjct: 671 ttacaaaagcatctagccaga 691
>ref|XM_793459.1| PREDICTED: Strongylocentrotus purpuratus similar to Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor (Endopeptidase Clp) (LOC594006), mRNA Length = 462 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 408 ggctgatgaatcattattcttgagttagg 436 |||||||||| ||| |||||||||||||| Sbjct: 206 ggctgatgaaccatgattcttgagttagg 178
>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7 Length = 348764 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 287 gatcttatccaggggctgcccggtgtggt 315 |||||| ||||||||||| |||||||||| Sbjct: 60391 gatcttgtccaggggctgaccggtgtggt 60419
>gb|AC010008.5| Drosophila melanogaster 3L BAC RP98-13N15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 158719 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 ttgaagtgctttgagaggatt 208 ||||||||||||||||||||| Sbjct: 60087 ttgaagtgctttgagaggatt 60067
>gb|AC093436.2| Drosophila melanogaster 3L BAC RP98-1O14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163711 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 ttgaagtgctttgagaggatt 208 ||||||||||||||||||||| Sbjct: 93011 ttgaagtgctttgagaggatt 92991
>dbj|AK030780.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730599C18 product:similar to MCM10 HOMOLOG [Homo sapiens], full insert sequence Length = 3415 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 ttacaaaagcatctagccaga 81 ||||||||||||||||||||| Sbjct: 1754 ttacaaaagcatctagccaga 1774
>gb|BC094576.1| Mus musculus minichromosome maintenance deficient 10 (S. cerevisiae), mRNA (cDNA clone MGC:106615 IMAGE:6853824), complete cds Length = 3522 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 ttacaaaagcatctagccaga 81 ||||||||||||||||||||| Sbjct: 1809 ttacaaaagcatctagccaga 1829
>gb|AE003540.3| Drosophila melanogaster chromosome 3L, section 45 of 83 of the complete sequence Length = 297381 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 ttgaagtgctttgagaggatt 208 ||||||||||||||||||||| Sbjct: 61237 ttgaagtgctttgagaggatt 61217
>emb|AL928886.7| Mouse DNA sequence from clone RP23-267D10 on chromosome X, complete sequence Length = 118425 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 gtctcttgtccttgggctcct 401 ||||||||||||||||||||| Sbjct: 48021 gtctcttgtccttgggctcct 48041
>emb|AL928662.5| Mouse DNA sequence from clone RP23-379M5 on chromosome 2, complete sequence Length = 116419 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 ttacaaaagcatctagccaga 81 ||||||||||||||||||||| Sbjct: 20182 ttacaaaagcatctagccaga 20162
>gb|L04961.1|MUSXISTA Mouse nuclear-localized inactive X-specific transcript (Xist) mRNA Length = 14739 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 aaggccatactccttcgcct 246 |||||||||||||||||||| Sbjct: 6817 aaggccatactccttcgcct 6836
>ref|NR_001463.2| Mus musculus inactive X specific transcripts (Xist) on chromosome X Length = 17919 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 aaggccatactccttcgcct 246 |||||||||||||||||||| Sbjct: 6853 aaggccatactccttcgcct 6872
>ref|NR_001570.1| Mus musculus inactive X specific transcripts (Xist) on chromosome X Length = 12251 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 aaggccatactccttcgcct 246 |||||||||||||||||||| Sbjct: 6853 aaggccatactccttcgcct 6872
>gb|BC103768.1| Mus musculus cDNA clone IMAGE:30840270 Length = 3136 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tctcattggcctggatctca 374 |||||||||||||||||||| Sbjct: 2502 tctcattggcctggatctca 2483
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 agaaaagcacccatacttgc 493 |||||||||||||||||||| Sbjct: 691341 agaaaagcacccatacttgc 691322
>gb|AC102358.5| Mus musculus chromosome 8, clone RP23-451H9, complete sequence Length = 202151 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tctcattggcctggatctca 374 |||||||||||||||||||| Sbjct: 16166 tctcattggcctggatctca 16185
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 354 atctcattggcctggatctcaaggtcgg 381 ||||| |||||||||||||| ||||||| Sbjct: 661523 atctccttggcctggatctccaggtcgg 661496
>gb|AC140441.3| Mus musculus BAC clone RP23-82A21 from chromosome 5, complete sequence Length = 177052 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 aagtccaatacaaactgtgg 516 |||||||||||||||||||| Sbjct: 142106 aagtccaatacaaactgtgg 142125
>gb|AC128663.4| Mus musculus BAC clone RP24-263E2 from chromosome 8, complete sequence Length = 197679 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tctcattggcctggatctca 374 |||||||||||||||||||| Sbjct: 9797 tctcattggcctggatctca 9778
>gb|AC121866.2| Mus musculus BAC clone RP24-114G1 from 8, complete sequence Length = 162835 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tctcattggcctggatctca 374 |||||||||||||||||||| Sbjct: 61735 tctcattggcctggatctca 61754
>ref|XM_503192.1| Yarrowia lipolytica CLIB122, YALI0D23463g predicted mRNA Length = 5586 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 563 agctgtcactgatcctcctggaga 586 |||||||||||| ||||||||||| Sbjct: 5474 agctgtcactgaacctcctggaga 5497
>emb|AL109837.22|HS1128N12 Human DNA sequence from clone RP5-1128N12 on chromosome 20 Contains the PGAM3P gene for phosphoglycerate mutase 3 pseudogene and a CpG island, complete sequence Length = 139214 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 tctagccagactaatgaaaa 91 |||||||||||||||||||| Sbjct: 15257 tctagccagactaatgaaaa 15276
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 408 ggctgatgaatcattattcttgagttaggtaa 439 |||||||| ||||| | ||||||||||||||| Sbjct: 2042729 ggctgatgtatcataactcttgagttaggtaa 2042760
>gb|AC105933.2| Homo sapiens chromosome 3 clone RP11-454I5, complete sequence Length = 175370 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 acaaactgtggaaacatcag 525 |||||||||||||||||||| Sbjct: 118272 acaaactgtggaaacatcag 118253
>gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181207 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 ttgaagtgctttgagaggattcac 211 |||| ||||||||||||||||||| Sbjct: 89399 ttgaggtgctttgagaggattcac 89422
>gb|AY113445.1| Drosophila melanogaster RE29777 full insert cDNA Length = 5386 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 ggcatccagatatagcagct 642 |||||||||||||||||||| Sbjct: 5221 ggcatccagatatagcagct 5202
>ref|NM_166242.1| Drosophila melanogaster CG10936-RB, transcript variant B (CG10936), mRNA Length = 5370 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 ggcatccagatatagcagct 642 |||||||||||||||||||| Sbjct: 5220 ggcatccagatatagcagct 5201
>ref|NM_137395.1| Drosophila melanogaster CG10936-RA, transcript variant A (CG10936), mRNA Length = 5373 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 ggcatccagatatagcagct 642 |||||||||||||||||||| Sbjct: 5223 ggcatccagatatagcagct 5204
>ref|NM_065497.2| Caenorhabditis elegans R07E5.7 (R07E5.7) mRNA, complete cds Length = 735 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tacaaaagcatctagccaga 81 |||||||||||||||||||| Sbjct: 709 tacaaaagcatctagccaga 690
>dbj|AK034303.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330175E14 product:HYPOTHETICAL 4.5 KDA PROTEIN homolog [Homo sapiens], full insert sequence Length = 4394 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tctcattggcctggatctca 374 |||||||||||||||||||| Sbjct: 3784 tctcattggcctggatctca 3765
>gb|AC149389.1| Phakopsora pachyrhizi clone JGIAFNA-5B15, complete sequence Length = 42171 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tggttgaagtgctttgagag 204 |||||||||||||||||||| Sbjct: 1280 tggttgaagtgctttgagag 1261
>gb|AC007697.5|AC007697 Drosophila melanogaster, chromosome 2R, region 54D4-54E7, BAC clone BACR12C23, complete sequence Length = 194897 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 ggcatccagatatagcagct 642 |||||||||||||||||||| Sbjct: 53572 ggcatccagatatagcagct 53591
>ref|NM_177146.2| Mus musculus RIKEN cDNA 9330175E14 gene (9330175E14Rik), mRNA Length = 4394 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tctcattggcctggatctca 374 |||||||||||||||||||| Sbjct: 3784 tctcattggcctggatctca 3765
>gb|AE003802.3| Drosophila melanogaster chromosome 2R, section 48 of 73 of the complete sequence Length = 246095 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 ggcatccagatatagcagct 642 |||||||||||||||||||| Sbjct: 48886 ggcatccagatatagcagct 48905
>gb|AC124387.5| Mus musculus BAC clone RP24-426N3 from chromosome 13, complete sequence Length = 159689 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tctcattggcctggatctca 374 |||||||||||||||||||| Sbjct: 139635 tctcattggcctggatctca 139654
>gb|AC119276.7| Mus musculus chromosome 5, clone RP24-459D3, complete sequence Length = 169072 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 aagtccaatacaaactgtgg 516 |||||||||||||||||||| Sbjct: 159941 aagtccaatacaaactgtgg 159922
>emb|Z32683.1|CER07E5 Caenorhabditis elegans Cosmid R07E5, complete sequence Length = 32266 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tacaaaagcatctagccaga 81 |||||||||||||||||||| Sbjct: 25311 tacaaaagcatctagccaga 25330
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 563 agctgtcactgatcctcctggaga 586 |||||||||||| ||||||||||| Sbjct: 3054066 agctgtcactgaacctcctggaga 3054089
>emb|AJ421479.1| Mus musculus X-inactivation center region; segment 2/3 Length = 252150 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 aaggccatactccttcgcct 246 |||||||||||||||||||| Sbjct: 113148 aaggccatactccttcgcct 113167
>emb|AL929473.7| Mouse DNA sequence from clone RP23-143P21 on chromosome 4, complete sequence Length = 59619 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gaaattacaaaagcatctag 76 |||||||||||||||||||| Sbjct: 9189 gaaattacaaaagcatctag 9170
>emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chromosome X, complete sequence Length = 229724 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 aaggccatactccttcgcct 246 |||||||||||||||||||| Sbjct: 170532 aaggccatactccttcgcct 170513 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,427,969 Number of Sequences: 3902068 Number of extensions: 5427969 Number of successful extensions: 105564 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105161 Number of HSP's gapped (non-prelim): 399 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
