>NDUB2_MOUSE (Q9CPU2) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit|
           2, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (NADH-ubiquinone oxidoreductase AGGG subunit) (Complex
           I-AGGG) (CI-AGGG)
          Length = 105

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 433 PHNKRWHTVAGKGLCAVMWFWIFYRAKQDGAVLLG 329
           P   R   + G+ L ++MWFWI +R   D   +LG
Sbjct: 48  PQLTRSQVIQGEFLSSLMWFWILWRFWHDSDAVLG 82

>RFC1_SCHPO (O60182) Probable activator 1 subunit 1 (Replication factor C|
           subunit 1) (Replication factor C1)
          Length = 934

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 207 IVLHVSTRVSANKSTTICHFIPVLFES--VNLFSTQTDFVAGLL 82
           I +H+  +VSANK     H+IP+L+ES  V L +  +D V  ++
Sbjct: 753 IQVHMRLKVSANKLDLRQHYIPILYESLPVKLSTGHSDVVPEII 796

>NDUB2_BOVIN (Q02374) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit|
           2, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (NADH-ubiquinone oxidoreductase AGGG subunit) (Complex
           I-AGGG) (CI-AGGG)
          Length = 108

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 433 PHNKRWHTVAGKGLCAVMWFWIFYRAKQDGAVLLG 329
           P   R   +  +   A MWFWI +R   D   +LG
Sbjct: 51  PQLTRSQVIQAEFFSATMWFWILWRFWHDSDAVLG 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,557,870
Number of Sequences: 219361
Number of extensions: 760879
Number of successful extensions: 1891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1890
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)