Clone Name | rbah63e21 |
---|---|
Clone Library Name | barley_pub |
>emb|X57407.1|TAPPSBP Wheat PsbP mRNA for 23 kDa oxygen evolving protein of photosystem II Length = 967 Score = 252 bits (127), Expect = 3e-64 Identities = 172/183 (93%), Gaps = 3/183 (1%) Strand = Plus / Minus Query: 1 cacatgaatccttga-gggaaatcgacctcttagttcatccatcctcatgtacaaatcaa 59 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 942 cacatgaatccttgaagggaaatcgacctcttagttcatccatcctcatgtacaaatcaa 883 Query: 60 agaaacacacatgcatgccctggatcggtctctacacggtgcttccctgaggaga-ttcc 118 ||||||||||||||||||||| |||||||||||||| ||||| |||||||||| | |||| Sbjct: 882 agaaacacacatgcatgccct-gatcggtctctacatggtgcatccctgaggaaatttcc 824 Query: 119 attgaattcgccgatcggtcatgtatatttatgcgacactgaaggatcctgcggcgttct 178 ||| || |||||| |||||| |||||||||||||||| |||||||||||||||||||||| Sbjct: 823 attaaactcgccggtcggtcgtgtatatttatgcgacgctgaaggatcctgcggcgttct 764 Query: 179 cga 181 ||| Sbjct: 763 cga 761
>gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, complete sequence Length = 214124 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 tccatcctcatgtacaaatca 58 ||||||||||||||||||||| Sbjct: 136776 tccatcctcatgtacaaatca 136756
>emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase gene locus (PADI12346 genes) Length = 355060 Score = 42.1 bits (21), Expect = 0.57 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 gagggaaatcgacctcttagttcat 38 ||||||||||||||||| ||||||| Sbjct: 304548 gagggaaatcgacctctaagttcat 304572
>gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete sequence Length = 137506 Score = 42.1 bits (21), Expect = 0.57 Identities = 24/25 (96%) Strand = Plus / Minus Query: 14 gagggaaatcgacctcttagttcat 38 ||||||||||||||||| ||||||| Sbjct: 103537 gagggaaatcgacctctaagttcat 103513
>gb|AC158392.2| Mus musculus BAC clone RP24-87B5 from chromosome 14, complete sequence Length = 187798 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 acaaatcaaagaaacacacatgca 74 |||||| ||||||||||||||||| Sbjct: 74134 acaaatgaaagaaacacacatgca 74157
>dbj|AK124745.1| Homo sapiens cDNA FLJ42755 fis, clone BRAWH3001475 Length = 3636 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 acaaatcaaagaaacacaca 70 |||||||||||||||||||| Sbjct: 1906 acaaatcaaagaaacacaca 1887
>gb|AC023283.10| Homo sapiens chromosome 10 clone RP11-539I5, complete sequence Length = 218074 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 acaaatcaaagaaacacaca 70 |||||||||||||||||||| Sbjct: 108556 acaaatcaaagaaacacaca 108575
>gb|AC005661.1|AC005661 citb_54_o_2, complete sequence Length = 84633 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 acaaatcaaagaaacacaca 70 |||||||||||||||||||| Sbjct: 25815 acaaatcaaagaaacacaca 25834
>gb|AC163610.4| Mus musculus BAC clone RP23-59P17 from chromosome 13, complete sequence Length = 237111 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 52 caaatcaaagaaacacacatgca 74 ||||| ||||||||||||||||| Sbjct: 215327 caaatgaaagaaacacacatgca 215305
>ref|NM_186247.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1114 Score = 38.2 bits (19), Expect = 8.9 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 44 ctcatgtacaaatcaaagaaacacaca 70 ||||||||||| ||||||||||||||| Sbjct: 1005 ctcatgtacaa-tcaaagaaacacaca 980
>gb|AC131976.6| Mus musculus chromosome 1, clone RP24-150D10, complete sequence Length = 167470 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 aatcaaagaaacacacatg 72 ||||||||||||||||||| Sbjct: 86311 aatcaaagaaacacacatg 86293
>gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, complete sequence Length = 175313 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 aatcaaagaaacacacatg 72 ||||||||||||||||||| Sbjct: 130124 aatcaaagaaacacacatg 130106
>gb|AC125534.4| Mus musculus BAC clone RP23-460A22 from chromosome 13, complete sequence Length = 181040 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 aaatcaaagaaacacacat 71 ||||||||||||||||||| Sbjct: 140298 aaatcaaagaaacacacat 140316
>gb|AC091611.5| Homo sapiens chromosome 1 clone RP11-369L17, complete sequence Length = 198486 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 aagaaacacacatgcatgc 77 ||||||||||||||||||| Sbjct: 32820 aagaaacacacatgcatgc 32802
>gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, complete sequence Length = 203273 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 gtctctacacggtgcttcc 105 ||||||||||||||||||| Sbjct: 15928 gtctctacacggtgcttcc 15910
>gb|AC122828.3| Mus musculus BAC clone RP23-215B8 from 13, complete sequence Length = 198604 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 aaatcaaagaaacacacat 71 ||||||||||||||||||| Sbjct: 4299 aaatcaaagaaacacacat 4317
>emb|AL954705.14| Human DNA sequence from clone RP13-15M17 on chromosome 1, complete sequence Length = 66275 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 cttagttcatccatcctca 47 ||||||||||||||||||| Sbjct: 49142 cttagttcatccatcctca 49160
>emb|AL445195.4| Human DNA sequence from clone RP11-427O13 on chromosome 13 Contains 2 NADH dehydrogenase pseudogenes and a novel gene, complete sequence Length = 172064 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 atccatcctcatgtacaaa 55 ||||||||||||||||||| Sbjct: 101520 atccatcctcatgtacaaa 101502
>emb|Z97344.2|ATFCA9 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9 Length = 81835 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 aaacacacatgcatgccct 80 ||||||||||||||||||| Sbjct: 9444 aaacacacatgcatgccct 9426
>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47 Length = 198067 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 aaacacacatgcatgccct 80 ||||||||||||||||||| Sbjct: 4456 aaacacacatgcatgccct 4438
>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46 Length = 198788 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 aaacacacatgcatgccct 80 ||||||||||||||||||| Sbjct: 198244 aaacacacatgcatgccct 198226
>gb|AC158746.8| Mus musculus chromosome 1, clone RP23-50E17, complete sequence Length = 245991 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 ctcttagttcatccatcct 45 ||||||||||||||||||| Sbjct: 79619 ctcttagttcatccatcct 79637
>gb|AC117834.6| Homo sapiens chromosome 8, clone CTD-3239E11, complete sequence Length = 189536 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 caaagaaacacacatgcat 75 ||||||||||||||||||| Sbjct: 18552 caaagaaacacacatgcat 18534
>emb|BX470135.8| Zebrafish DNA sequence from clone RP71-15H20 in linkage group 8, complete sequence Length = 147292 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 catgtacaaatcaaagaaa 64 ||||||||||||||||||| Sbjct: 125409 catgtacaaatcaaagaaa 125391
>emb|X68303.1|HSCYCLA H.sapiens cycA gene for cyclin A Length = 8363 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 gaaacacacatgcatgccc 79 ||||||||||||||||||| Sbjct: 6874 gaaacacacatgcatgccc 6856
>gb|AF518006.1| Homo sapiens cyclin A2 (CCNA2) gene, complete cds Length = 9323 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 gaaacacacatgcatgccc 79 ||||||||||||||||||| Sbjct: 7386 gaaacacacatgcatgccc 7368
>dbj|AK128115.1| Homo sapiens cDNA FLJ46236 fis, clone TESTI4017229 Length = 4268 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 catgaatccttgagggaaa 21 ||||||||||||||||||| Sbjct: 2377 catgaatccttgagggaaa 2395
>gb|AC104462.1| Homo sapiens chromosome 1 clone RP11-522M21, complete sequence Length = 183271 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 acacacatgcatgccctgg 82 ||||||||||||||||||| Sbjct: 118464 acacacatgcatgccctgg 118482
>gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, complete sequence Length = 167984 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 caaagaaacacacatgcat 75 ||||||||||||||||||| Sbjct: 30511 caaagaaacacacatgcat 30529
>gb|AC159095.4| Mus musculus chromosome 1, clone RP24-278F22, complete sequence Length = 157935 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 aatcaaagaaacacacatg 72 ||||||||||||||||||| Sbjct: 38910 aatcaaagaaacacacatg 38928
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 8.9 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 44 ctcatgtacaaatcaaagaaacacaca 70 ||||||||||| ||||||||||||||| Sbjct: 2169140 ctcatgtacaa-tcaaagaaacacaca 2169165
>gb|AC079341.6| Homo sapiens BAC clone RP11-63B13 from 4, complete sequence Length = 149819 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 gaaacacacatgcatgccc 79 ||||||||||||||||||| Sbjct: 77675 gaaacacacatgcatgccc 77693
>gb|AC135803.2| Homo sapiens chromosome 1 clone RP11-17E13, complete sequence Length = 67619 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 aagaaacacacatgcatgc 77 ||||||||||||||||||| Sbjct: 57106 aagaaacacacatgcatgc 57088
>gb|AC124862.4| Homo sapiens BAC clone RP11-27M15 from 2, complete sequence Length = 160111 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacacacatgcatgccct 80 ||||||||||||||||||| Sbjct: 134130 aaacacacatgcatgccct 134148
>emb|AL713977.13| Mouse DNA sequence from clone RP23-303A21 on chromosome X, complete sequence Length = 159014 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 catgtacaaatcaaagaaa 64 ||||||||||||||||||| Sbjct: 143589 catgtacaaatcaaagaaa 143607
>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1351_C05 Length = 112465 Score = 38.2 bits (19), Expect = 8.9 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 44 ctcatgtacaaatcaaagaaacacaca 70 ||||||||||| ||||||||||||||| Sbjct: 37042 ctcatgtacaa-tcaaagaaacacaca 37067
>dbj|AK104722.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B02, full insert sequence Length = 1078 Score = 38.2 bits (19), Expect = 8.9 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 44 ctcatgtacaaatcaaagaaacacaca 70 ||||||||||| ||||||||||||||| Sbjct: 961 ctcatgtacaa-tcaaagaaacacaca 936
>dbj|AK065248.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J02, full insert sequence Length = 1114 Score = 38.2 bits (19), Expect = 8.9 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 44 ctcatgtacaaatcaaagaaacacaca 70 ||||||||||| ||||||||||||||| Sbjct: 1005 ctcatgtacaa-tcaaagaaacacaca 980
>gb|AC006582.13|AC006582 Pan troglodytes 12cp12 BAC RPCI43-77C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186092 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 aaatcaaagaaacacacat 71 ||||||||||||||||||| Sbjct: 107681 aaatcaaagaaacacacat 107699
>emb|AL136293.5|CNS01DVX Human chromosome 14 DNA sequence BAC C-2555C10 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 226035 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 catgaatccttgagggaaa 21 ||||||||||||||||||| Sbjct: 65790 catgaatccttgagggaaa 65808
>gb|AF052203.1|AF052203 Oryza sativa 23 kDa polypeptide of photosystem II mRNA, complete cds Length = 1107 Score = 38.2 bits (19), Expect = 8.9 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 44 ctcatgtacaaatcaaagaaacacaca 70 ||||||||||| ||||||||||||||| Sbjct: 980 ctcatgtacaa-tcaaagaaacacaca 955
>emb|CR556714.4| Zebrafish DNA sequence from clone DKEY-29P13 in linkage group 11, complete sequence Length = 124598 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 aaagaaacacacatgcatg 76 ||||||||||||||||||| Sbjct: 96281 aaagaaacacacatgcatg 96263
>emb|AL773601.11| Zebrafish DNA sequence from clone CH211-199O1, complete sequence Length = 201299 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 catgtacaaatcaaagaaa 64 ||||||||||||||||||| Sbjct: 137899 catgtacaaatcaaagaaa 137881
>emb|AL671492.12| Mouse DNA sequence from clone RP23-286H11 on chromosome X, complete sequence Length = 202638 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 catgtacaaatcaaagaaacaca 68 ||||||||||| ||||||||||| Sbjct: 56740 catgtacaaataaaagaaacaca 56762
>emb|AL928966.3| Mouse DNA sequence from clone RP24-388A9 on chromosome 2, complete sequence Length = 173369 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 aatcaaagaaacacacatg 72 ||||||||||||||||||| Sbjct: 158704 aatcaaagaaacacacatg 158686
>dbj|D49713.1|RICOSEE2 Rice OSOEE2 gene for 23 kDa polypeptide of photosystem II, complete cds Length = 1008 Score = 38.2 bits (19), Expect = 8.9 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 44 ctcatgtacaaatcaaagaaacacaca 70 ||||||||||| ||||||||||||||| Sbjct: 919 ctcatgtacaa-tcaaagaaacacaca 894
>emb|AL663100.12| Human DNA sequence from clone RP5-1052J3 on chromosome 1, complete sequence Length = 80421 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 cttagttcatccatcctca 47 ||||||||||||||||||| Sbjct: 21192 cttagttcatccatcctca 21174 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,711,823 Number of Sequences: 3902068 Number of extensions: 1711823 Number of successful extensions: 128732 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 128597 Number of HSP's gapped (non-prelim): 140 length of query: 181 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 159 effective length of database: 17,147,199,772 effective search space: 2726404763748 effective search space used: 2726404763748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)