ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63e20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RP1_CANFA (Q8MJ04) Oxygen-regulated protein 1 (Retinitis pigment... 31 2.1
2DHYS_METKA (Q8TXD7) Probable deoxyhypusine synthase (EC 2.5.1.46... 30 3.6

>RP1_CANFA (Q8MJ04) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein|
            homolog)
          Length = 2141

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +1

Query: 328  NTNPHTAVQALAFRRSSMTDSRR*NVVPCSRIRGEVQTKEHTSTQGG 468
            NTNPH+A+Q+   R+S+    +  +VV C+   G   TK HTS+  G
Sbjct: 921  NTNPHSALQS---RKSAPIYKKDRSVVSCNN-NGFAGTKSHTSSGEG 963



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>DHYS_METKA (Q8TXD7) Probable deoxyhypusine synthase (EC 2.5.1.46) (DHS)|
          Length = 297

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 257 ADEAPMIEVPGVLDQIVGGFIWVLIQTH 340
           ADE   I  PG+LD +VG  +W+  Q H
Sbjct: 162 ADEGVPIYSPGILDSMVGLHVWIHSQDH 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,171,495
Number of Sequences: 219361
Number of extensions: 1808686
Number of successful extensions: 3728
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3728
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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