>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 94/107 (87%), Gaps = 6/107 (5%)
 Strand = Plus / Minus

                                                                           
Query: 463     ggggggagaacccggggctaaaacaagataaaccccgtgcgatctncccccgagacacaa 522
               |||||||||||||||||||||| ||| |||| |||||||||| || |||||  |||||||
Sbjct: 6723408 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 6723350

                                                              
Query: 523     aaac--catctttattacggtggtggcctgccatgcgagcgcaccca 567
               |||   |||||||||||||||||   |||||||||||||||||||||
Sbjct: 6723349 aaagatcatctttattacggtgg---cctgccatgcgagcgcaccca 6723306

>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
              complete sequence
          Length = 127946

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 94/107 (87%), Gaps = 6/107 (5%)
 Strand = Plus / Minus

                                                                          
Query: 463    ggggggagaacccggggctaaaacaagataaaccccgtgcgatctncccccgagacacaa 522
              |||||||||||||||||||||| ||| |||| |||||||||| || |||||  |||||||
Sbjct: 108956 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 108898

                                                             
Query: 523    aaac--catctttattacggtggtggcctgccatgcgagcgcaccca 567
              |||   |||||||||||||||||   |||||||||||||||||||||
Sbjct: 108897 aaagatcatctttattacggtgg---cctgccatgcgagcgcaccca 108854

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 94/107 (87%), Gaps = 6/107 (5%)
 Strand = Plus / Minus

                                                                           
Query: 463     ggggggagaacccggggctaaaacaagataaaccccgtgcgatctncccccgagacacaa 522
               |||||||||||||||||||||| ||| |||| |||||||||| || |||||  |||||||
Sbjct: 6722621 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 6722563

                                                              
Query: 523     aaac--catctttattacggtggtggcctgccatgcgagcgcaccca 567
               |||   |||||||||||||||||   |||||||||||||||||||||
Sbjct: 6722562 aaagatcatctttattacggtgg---cctgccatgcgagcgcaccca 6722519

>dbj|AK103846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148J22, full
           insert sequence
          Length = 2465

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 94/107 (87%), Gaps = 6/107 (5%)
 Strand = Plus / Minus

                                                                       
Query: 463 ggggggagaacccggggctaaaacaagataaaccccgtgcgatctncccccgagacacaa 522
           |||||||||||||||||||||| ||| |||| |||||||||| || |||||  |||||||
Sbjct: 732 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 674

                                                          
Query: 523 aaac--catctttattacggtggtggcctgccatgcgagcgcaccca 567
           |||   |||||||||||||||||   |||||||||||||||||||||
Sbjct: 673 aaagatcatctttattacggtgg---cctgccatgcgagcgcaccca 630

>dbj|AK061960.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G02, full
           insert sequence
          Length = 1385

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 94/107 (87%), Gaps = 6/107 (5%)
 Strand = Plus / Minus

                                                                       
Query: 463 ggggggagaacccggggctaaaacaagataaaccccgtgcgatctncccccgagacacaa 522
           |||||||||||||||||||||| ||| |||| |||||||||| || |||||  |||||||
Sbjct: 735 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 677

                                                          
Query: 523 aaac--catctttattacggtggtggcctgccatgcgagcgcaccca 567
           |||   |||||||||||||||||   |||||||||||||||||||||
Sbjct: 676 aaagatcatctttattacggtgg---cctgccatgcgagcgcaccca 633

>dbj|AK058847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-G07, full
           insert sequence
          Length = 695

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 94/107 (87%), Gaps = 6/107 (5%)
 Strand = Plus / Minus

                                                                       
Query: 463 ggggggagaacccggggctaaaacaagataaaccccgtgcgatctncccccgagacacaa 522
           |||||||||||||||||||||| ||| |||| |||||||||| || |||||  |||||||
Sbjct: 141 ggggggagaacccggggctaaa-caaaataacccccgtgcgaactccccccaggacacaa 83

                                                          
Query: 523 aaac--catctttattacggtggtggcctgccatgcgagcgcaccca 567
           |||   |||||||||||||||||   |||||||||||||||||||||
Sbjct: 82  aaagatcatctttattacggtgg---cctgccatgcgagcgcaccca 39

>gb|BT016696.1| Zea mays clone Contig529 mRNA sequence
          Length = 707

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 544 tggcctgccatgcgagcgcaccca 567
           ||||||||||||||||||||||||
Sbjct: 634 tggcctgccatgcgagcgcaccca 611

>gb|BT017551.1| Zea mays clone EL01N0424D04.c mRNA sequence
          Length = 1171

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 544 tggcctgccatgcgagcgcaccca 567
           ||||||||||||||||||||||||
Sbjct: 566 tggcctgccatgcgagcgcaccca 543

>gb|BT017416.1| Zea mays clone EL01N0401B11.c mRNA sequence
          Length = 1133

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 544 tggcctgccatgcgagcgcaccca 567
           ||||||||||||||||||||||||
Sbjct: 565 tggcctgccatgcgagcgcaccca 542

>gb|BT012851.1| Lycopersicon esculentum clone 113930R, mRNA sequence
          Length = 2584

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 544 tggcctgccatgcgagcgcaccca 567
           ||||||||||||||||||||||||
Sbjct: 698 tggcctgccatgcgagcgcaccca 675

>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence
          Length = 76158

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 213   gaaagcattcaccaaacttccagaat 238
             ||||||||| ||||||||||||||||
Sbjct: 22245 gaaagcatttaccaaacttccagaat 22220

>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence
          Length = 171307

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 213    gaaagcattcaccaaacttccagaat 238
              ||||||||| ||||||||||||||||
Sbjct: 149048 gaaagcatttaccaaacttccagaat 149023

>ref|NM_114656.2| Arabidopsis thaliana binding AT3G47860 mRNA, complete cds
          Length = 1162

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 229  cttccagaatcaaaacactct 249
            |||||||||||||||||||||
Sbjct: 1141 cttccagaatcaaaacactct 1161

>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
             complete sequence
          Length = 164501

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 543   gtggcctgccatgcgagcgcaccca 567
             ||||||||||| |||||||||||||
Sbjct: 33515 gtggcctgccaagcgagcgcaccca 33491

>gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19,
             complete sequence
          Length = 158749

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 543   gtggcctgccatgcgagcgcaccca 567
             ||||||||||| |||||||||||||
Sbjct: 29728 gtggcctgccaagcgagcgcaccca 29752

>emb|AL358074.22| Human DNA sequence from clone RP11-423C15 on chromosome 9 Contains
            the 5' end of the MAPKAP1 gene for mitogen-activated
            protein kinase associated protein 1, a novel gene, the 5'
            end of the PBX3 gene for pre-B-cell leukemia
            transcription factor 3 and three CpG islands, complete
            sequence
          Length = 109081

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 137  aacaacttcacaaatgatttg 157
            |||||||||||||||||||||
Sbjct: 2621 aacaacttcacaaatgatttg 2601

>emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chromosome 9 Contains a
             pseudogene similar to part of a zinc finger protein, two
             novel pseudogenes, a novel gene similar to DKFZP434I1117,
             a novel pseudogene (FLJ23476), two novel gene, a novel
             gene similar to MGC12954 and four CpG islands, complete
             sequence
          Length = 186108

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 309   gaggcttcatttgggtactaa 329
             |||||||||||||||||||||
Sbjct: 10135 gaggcttcatttgggtactaa 10115

>emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7
          Length = 92493

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 229   cttccagaatcaaaacactct 249
             |||||||||||||||||||||
Sbjct: 80883 cttccagaatcaaaacactct 80863

>gb|AY044334.1| Arabidopsis thaliana putative protein (T23J7.190) mRNA, complete cds
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 229  cttccagaatcaaaacactct 249
            |||||||||||||||||||||
Sbjct: 1122 cttccagaatcaaaacactct 1142

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 543      gtggcctgccatgcgagcgcaccca 567
                ||||||||||| |||||||||||||
Sbjct: 12364103 gtggcctgccaagcgagcgcaccca 12364079

>dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0045D08
          Length = 160541

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 543    gtggcctgccatgcgagcgcaccca 567
              ||||||||||| |||||||||||||
Sbjct: 122752 gtggcctgccaagcgagcgcaccca 122728

>gb|AC153891.6| Mus musculus 10 BAC RP23-415J15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 198332

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 77     aaattatgattaacaacagagacaa 101
              ||||||||||| |||||||||||||
Sbjct: 107266 aaattatgattcacaacagagacaa 107290

>gb|U84972.1|NTU84972 Nicotiana tabacum GUT15 mRNA, complete cds
          Length = 1670

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 547 cctgccatgcgagcgcaccca 567
           |||||||||||||||||||||
Sbjct: 630 cctgccatgcgagcgcaccca 610

>gb|AC168272.8| Mus musculus 10 BAC RP24-261C21 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 189395

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 77    aaattatgattaacaacagagacaa 101
             ||||||||||| |||||||||||||
Sbjct: 46084 aaattatgattcacaacagagacaa 46060

>gb|AC121784.2| Mus musculus BAC clone RP23-378G4 from 12, complete sequence
          Length = 163125

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 209    tttggaaagcattcaccaaacttccaga 236
              ||||||||||||||| | ||||||||||
Sbjct: 101409 tttggaaagcattcagccaacttccaga 101436

>ref|XM_738248.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000956.01.0)
            partial mRNA
          Length = 1935

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   aaattatgattaacaacaga 96
            ||||||||||||||||||||
Sbjct: 1367 aaattatgattaacaacaga 1386

>gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, complete sequence
          Length = 154939

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 131    tgacacaacaacttcacaaatgatttgc 158
              |||||| |||||| ||||||||||||||
Sbjct: 124123 tgacactacaactccacaaatgatttgc 124096

>gb|U75695.1|STU75695 Solanum tuberosum SRE1c (sre1c) mRNA, complete cds
          Length = 2395

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 547 cctgccatgcgagcgcaccc 566
           ||||||||||||||||||||
Sbjct: 745 cctgccatgcgagcgcaccc 726

>gb|U75694.1|STU75694 Solanum tuberosum SRE1b (sre1b) mRNA, complete cds
          Length = 2467

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 547 cctgccatgcgagcgcaccc 566
           ||||||||||||||||||||
Sbjct: 719 cctgccatgcgagcgcaccc 700

>gb|U75693.1|STU75693 Solanum tuberosum SRE1a (sre1a) mRNA, complete cds
          Length = 2060

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 547 cctgccatgcgagcgcaccc 566
           ||||||||||||||||||||
Sbjct: 731 cctgccatgcgagcgcaccc 712


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,279,030
Number of Sequences: 3902068
Number of extensions: 5279030
Number of successful extensions: 94778
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94595
Number of HSP's gapped (non-prelim): 171
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)