ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62p12 |
|---|---|
| Clone Library Name | barley_pub |
>METK_HORVU (P50299) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 394 Score = 41.2 bits (95), Expect = 8e-04 Identities = 18/18 (100%), Positives = 18/18 (100%) Frame = -3 Query: 172 ADFTWEVVKPLKFDKASA 119 ADFTWEVVKPLKFDKASA Sbjct: 377 ADFTWEVVKPLKFDKASA 394
>METL_ORYSA (P93438) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 394 Score = 35.8 bits (81), Expect = 0.032 Identities = 14/17 (82%), Positives = 17/17 (100%) Frame = -3 Query: 169 DFTWEVVKPLKFDKASA 119 DFTWEVVKPLK++KAS+ Sbjct: 378 DFTWEVVKPLKYEKASS 394
>METL_CATRO (Q96552) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 393 Score = 35.0 bits (79), Expect = 0.055 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -3 Query: 169 DFTWEVVKPLKFDKASA 119 DFTWEVVKPLKF+K A Sbjct: 377 DFTWEVVKPLKFEKVEA 393
>METK_ORYSA (P46611) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 396 Score = 34.3 bits (77), Expect = 0.094 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -3 Query: 169 DFTWEVVKPLKFDKASA 119 DFTWEVVKPLK++K SA Sbjct: 380 DFTWEVVKPLKWEKPSA 396
>METL_LYCES (P43281) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 393 Score = 34.3 bits (77), Expect = 0.094 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -3 Query: 169 DFTWEVVKPLKFDKASA 119 DFTWEVVKPLK+DK A Sbjct: 377 DFTWEVVKPLKWDKPEA 393
>METL_ARATH (P17562) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 393 Score = 34.3 bits (77), Expect = 0.094 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -3 Query: 169 DFTWEVVKPLKFDKASA 119 DFTWEVVKPLK+DK A Sbjct: 377 DFTWEVVKPLKWDKPQA 393
>METK_BRAJU (P49611) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 393 Score = 34.3 bits (77), Expect = 0.094 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -3 Query: 169 DFTWEVVKPLKFDKASA 119 DFTWEVVKPLK+DK A Sbjct: 377 DFTWEVVKPLKWDKPQA 393
>METK_ARATH (P23686) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 393 Score = 34.3 bits (77), Expect = 0.094 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -3 Query: 169 DFTWEVVKPLKFDKASA 119 DFTWEVVKPLK+DK A Sbjct: 377 DFTWEVVKPLKWDKPQA 393
>METK_CATRO (Q96551) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 393 Score = 33.5 bits (75), Expect = 0.16 Identities = 13/16 (81%), Positives = 16/16 (100%) Frame = -3 Query: 169 DFTWEVVKPLKFDKAS 122 DFTWEVVKPLK++KA+ Sbjct: 377 DFTWEVVKPLKWEKAA 392
>METK_PETCR (P31155) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) (Fragment) Length = 234 Score = 33.1 bits (74), Expect = 0.21 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -3 Query: 169 DFTWEVVKPLKFDKA 125 DFTWEVVKPLK++KA Sbjct: 220 DFTWEVVKPLKWEKA 234
>METK_PINBN (P50300) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 393 Score = 33.1 bits (74), Expect = 0.21 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 169 DFTWEVVKPLKFDKASA 119 DFTWE VKPLK++KA A Sbjct: 377 DFTWETVKPLKWEKAQA 393
>METK_PEA (P49612) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) (Fragment) Length = 366 Score = 33.1 bits (74), Expect = 0.21 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -3 Query: 169 DFTWEVVKPLKFDKA 125 DFTWEVVKPLK++KA Sbjct: 352 DFTWEVVKPLKWEKA 366
>METL_PETCR (P31156) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) (Fragment) Length = 145 Score = 33.1 bits (74), Expect = 0.21 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -3 Query: 169 DFTWEVVKPLKFDKA 125 DFTWEVVKPLK++KA Sbjct: 131 DFTWEVVKPLKWEKA 145
>METK_MESCR (P93254) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 392 Score = 33.1 bits (74), Expect = 0.21 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -3 Query: 172 ADFTWEVVKPLKFDK 128 ADFTWEVVKPLK++K Sbjct: 375 ADFTWEVVKPLKWEK 389
>METM_ACTCH (P50303) S-adenosylmethionine synthetase 3 (EC 2.5.1.6) (Methionine| adenosyltransferase 3) (AdoMet synthetase 3) (Fragment) Length = 360 Score = 33.1 bits (74), Expect = 0.21 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -3 Query: 172 ADFTWEVVKPLKFDK 128 ADFTWEVVKPLK++K Sbjct: 343 ADFTWEVVKPLKWEK 357
>METK_LYCES (P43280) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 393 Score = 31.6 bits (70), Expect = 0.61 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = -3 Query: 169 DFTWEVVKPLKFDK 128 DFTWEVVKPLK++K Sbjct: 377 DFTWEVVKPLKWEK 390
>METK_POPDE (P47916) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 395 Score = 31.2 bits (69), Expect = 0.80 Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = -3 Query: 169 DFTWEVVKPLKFD 131 DFTWEVVKPLK+D Sbjct: 378 DFTWEVVKPLKWD 390
>METK_MUSAC (O22338) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 393 Score = 31.2 bits (69), Expect = 0.80 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 169 DFTWEVVKPLKFDKASA 119 DFTWEVVKPL+ +K +A Sbjct: 377 DFTWEVVKPLELEKPAA 393
>DPOL_HBVWJ (P17394) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 843 Score = 28.9 bits (63), Expect = 4.0 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 126 HLPKKKTSQWGYSWSAATLVQQSFGSW 46 HL KT +WGYS + V S+G+W Sbjct: 580 HLNPNKTKRWGYSLNFMGYVIGSWGTW 606
>PLSB_XANAC (Q8PES0) Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT)| Length = 885 Score = 28.5 bits (62), Expect = 5.2 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -1 Query: 120 PKKKTSQWGYSWSAATLVQQSFG 52 PK+K S WG WS +++Q++G Sbjct: 499 PKEKESIWGLLWSIPKVLKQNYG 521
>PLSB_XANCP (Q8P3E3) Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT)| Length = 886 Score = 28.5 bits (62), Expect = 5.2 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -1 Query: 120 PKKKTSQWGYSWSAATLVQQSFG 52 PK+K S WG WS +++Q++G Sbjct: 499 PKEKESIWGLLWSIPKVLKQNYG 521
>DDX28_MOUSE (Q9CWT6) Probable ATP-dependent RNA helicase DDX28 (EC 3.6.1.-)| (Mitochondrial DEAD box protein 28) Length = 540 Score = 28.1 bits (61), Expect = 6.8 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = -3 Query: 172 ADFTWEVVKPLKF-DKASA*EEDITVGLFLVCCHSSSTILWL 50 AD E+V+ LK DKAS E TV LV C+S+ST+ WL Sbjct: 375 ADKVTELVQILKQQDKASKTEPSGTV---LVFCNSASTVNWL 413 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,885,604 Number of Sequences: 219361 Number of extensions: 407137 Number of successful extensions: 1253 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1253 length of database: 80,573,946 effective HSP length: 33 effective length of database: 73,335,033 effective search space used: 1760040792 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
