Clone Name | rbah63e18 |
---|---|
Clone Library Name | barley_pub |
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 1025 bits (517), Expect = 0.0 Identities = 526/529 (99%) Strand = Plus / Minus Query: 1 aagagacttacaattgggttacctgtgcggcgatgaatcaaaaagtttgagtggatttcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4164 aagagacttacaattgggttacctgtgcggcgatgaatcaaaaagtttgagtggatttcg 4105 Query: 61 ggtccaaaatagtccaacatatatatagtgcatgcatgcatcttaagtagagtaggacct 120 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 4104 ggtccaaaatagtccaacatatatatagtgcatgcatcgatcttaagtagagtaggacct 4045 Query: 121 tctacttgccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4044 tctacttgccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccg 3985 Query: 181 cctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3984 cctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacca 3925 Query: 241 gcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3924 gcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcg 3865 Query: 301 gcccctccctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgaccc 360 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3864 gcccctccctggagttgacgaggcgcttggagatgttctccacgccgatctcgccgaccc 3805 Query: 361 acttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggact 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3804 acttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggact 3745 Query: 421 gccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcgga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3744 gccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcgga 3685 Query: 481 agatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3684 agatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 3636 Score = 105 bits (53), Expect = 1e-19 Identities = 170/209 (81%) Strand = Plus / Minus Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 7229 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 7170 Query: 264 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 323 ||||| | |||||||| ||||| ||||| || ||||| |||| |||||| || || Sbjct: 7169 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 7110 Query: 324 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 383 | |||| |||||||| | ||| | ||||||||||||||||||||| ||||||||| Sbjct: 7109 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 7050 Query: 384 acccgtgcccgcagcgcgccgaagaagtc 412 ||||| || ||||| || ||||| ||||| Sbjct: 7049 acccgagcacgcagagcaccgaaaaagtc 7021
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 1025 bits (517), Expect = 0.0 Identities = 526/529 (99%) Strand = Plus / Minus Query: 1 aagagacttacaattgggttacctgtgcggcgatgaatcaaaaagtttgagtggatttcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1595 aagagacttacaattgggttacctgtgcggcgatgaatcaaaaagtttgagtggatttcg 1536 Query: 61 ggtccaaaatagtccaacatatatatagtgcatgcatgcatcttaagtagagtaggacct 120 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1535 ggtccaaaatagtccaacatatatatagtgcatgcatcgatcttaagtagagtaggacct 1476 Query: 121 tctacttgccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1475 tctacttgccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccg 1416 Query: 181 cctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1415 cctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacca 1356 Query: 241 gcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1355 gcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcg 1296 Query: 301 gcccctccctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgaccc 360 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1295 gcccctccctggagttgacgaggcgcttggagatgttctccacgccgatctcgccgaccc 1236 Query: 361 acttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggact 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1235 acttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggact 1176 Query: 421 gccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcgga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1175 gccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcgga 1116 Query: 481 agatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1115 agatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 1067
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 821 bits (414), Expect = 0.0 Identities = 507/537 (94%), Gaps = 12/537 (2%) Strand = Plus / Minus Query: 1 aagagacttacaattgggttacctgtgcggcgatgaatcaaaaagtttgagtggatttcg 60 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 1449 aagagacttacaattgggctacctgtgcggcgatgaatcaaaaagtttgagtggatt-cg 1391 Query: 61 ggtccaaaatagtccaacatatatatagtgcatgcatgca--------tcttaagtagag 112 |||||||||| |||| ||||||||||||||||||||||| ||||||||| Sbjct: 1390 agtccaaaatattccagcatatatatagtgcatgcatgcacgcatgcatcttaagta--- 1334 Query: 113 taggaccttctacttgccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggcc 172 |||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct: 1333 taggactttctacttgccgtagaaggcgccggtcgccatggcgtcgtcgttggcttggcc 1274 Query: 173 gagcgccgcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctc 232 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1273 gagcgccgcctcgctgaggtacttgtcggcgagctgcacgcgcttcacgttctcctgctc 1214 Query: 233 ctggaccagcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaa 292 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1213 ctggaccagcatgtggccgtactccatgagcttctcgatggtcatcttgggctggtcgaa 1154 Query: 293 cgtgggcggcccctccctcgagttgacgaggcgcttggagatgttctccacgccgatctc 352 ||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 1153 cgtcggcggcccctccctggagttgacgagccgcttggagatgttctcgacgccgatctc 1094 Query: 353 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 412 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1093 gccgacccacttgcgcacctcgtcgtcgtacacccgcgcccgcagcgcgccgaagaagtc 1034 Query: 413 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 472 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1033 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtcggggacgttgtc 974 Query: 473 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 973 ggtgcggaagatgcccttgcacacgccgatgcggtcctcccgggtgggcgcccagta 917
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 345 bits (174), Expect = 9e-92 Identities = 333/386 (86%) Strand = Plus / Minus Query: 144 gtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctgaggtacttgtcggcg 203 |||||||||||||| |||||||||| || || || |||||| ||||||||||||| || Sbjct: 908 gtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggtacttgtcagca 849 Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 848 agctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgtactccaagagc 789 Query: 264 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 323 ||||| || || ||||||||||| |||||||||||||| |||||| | ||||||||||| Sbjct: 788 ttctcgatcgttatcttgggctgctcgaacgtgggcgggccctccttggagttgacgagc 729 Query: 324 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 383 | ||| ||||||||| |||||| |||||| |||||| || |||||||||||||| Sbjct: 728 ttcctggcgatgttctcgacgccggtctcgctcacccaccgtcggacctcgtcgtcgtag 669 Query: 384 acccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 443 ||||| || ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 668 acccgggcacgcagcgcgccgaagaagtcgatggactggccagggaaggtgtcgaccagc 609 Query: 444 ctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatg 503 || ||| ||| || |||| |||||||||||||||||||||||| ||||||||| Sbjct: 608 tggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgcccttgcagacgccgatg 549 Query: 504 cggtcctcgcgggtgggcgcccagta 529 |||||||||||||||||||||||||| Sbjct: 548 cggtcctcgcgggtgggcgcccagta 523
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 337 bits (170), Expect = 2e-89 Identities = 332/386 (86%) Strand = Plus / Minus Query: 144 gtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctgaggtacttgtcggcg 203 |||||||||||||| |||||||||| || || || |||||| ||||||||||||| || Sbjct: 1303 gtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggtacttgtcagca 1244 Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 1243 agctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgtactccaagagc 1184 Query: 264 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 323 ||||| || || ||||||||||| |||||||||||||| |||||| | ||||||||||| Sbjct: 1183 ttctcgatcgttatcttgggctgctcgaacgtgggcgggccctccttggagttgacgagc 1124 Query: 324 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 383 | ||| ||||||||| |||||| |||||| |||||| || |||||||||||||| Sbjct: 1123 ttcctggcgatgttctcgacgccggtctcgctcacccaccgtcggacctcgtcgtcgtag 1064 Query: 384 acccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 443 ||||| || ||||||||||||||||| ||||||||||| || ||||||||||| |||||| Sbjct: 1063 acccgggcacgcagcgcgccgaagaaatcgatggactggccagggaaggtgtcgaccagc 1004 Query: 444 ctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatg 503 || ||| ||| || |||| |||||||||||||||||||||||| ||||||||| Sbjct: 1003 tggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgcccttgcagacgccgatg 944 Query: 504 cggtcctcgcgggtgggcgcccagta 529 |||||||||||||||||||||||||| Sbjct: 943 cggtcctcgcgggtgggcgcccagta 918
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 321 bits (162), Expect = 1e-84 Identities = 330/386 (85%) Strand = Plus / Minus Query: 144 gtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctgaggtacttgtcggcg 203 |||||||||||||| |||||||||| || || || |||||| ||||||||||||| || Sbjct: 1303 gtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggtacttgtcagca 1244 Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 1243 agctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgtactccaagagc 1184 Query: 264 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 323 ||||| || || ||||||||||| |||||||||||||| |||||| | ||||||||||| Sbjct: 1183 ttctcgatcgttatcttgggctgctcgaacgtgggcgggccctccttggagttgacgagc 1124 Query: 324 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 383 | ||| ||||||||| |||||| |||||| |||||| || |||||||||||||| Sbjct: 1123 ttcctggcgatgttctcgacgccggtctcgctcacccaccgtcggacctcgtcgtcgtag 1064 Query: 384 acccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 443 ||| || ||||||||||||||||| ||||||||||| || ||||||||||| |||||| Sbjct: 1063 accgtggcacgcagcgcgccgaagaaatcgatggactggccggggaaggtgtcgaccagc 1004 Query: 444 ctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatg 503 || ||| ||| || |||| |||||||||||||||||||||||| ||||||||| Sbjct: 1003 tggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgcccttgcagacgccgatg 944 Query: 504 cggtcctcgcgggtgggcgcccagta 529 |||||||||||||||||||||||||| Sbjct: 943 cggtcctcgcgggtgggcgcccagta 918
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 224 bits (113), Expect = 2e-55 Identities = 329/401 (82%) Strand = Plus / Minus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1070 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccggg 428 |||||||||||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct: 1069 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatggattggcctggg 1010 Query: 429 aaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgccc 488 ||| |||| || | | | || | | ||||||| ||||||||||||||||||||||| ||| Sbjct: 1009 aagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtgcggaagataccc 950 Query: 489 ttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 949 ttgcagacgccgacacggtcgtcgcgggtgggagcccagta 909
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 224 bits (113), Expect = 2e-55 Identities = 329/401 (82%) Strand = Plus / Minus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1357 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1298 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1297 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1238 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1237 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1178 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1177 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1118 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccggg 428 |||||||||||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct: 1117 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatggattggcctggg 1058 Query: 429 aaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgccc 488 ||| |||| || | | | || | | ||||||| ||||||||||||||||||||||| ||| Sbjct: 1057 aagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtgcggaagataccc 998 Query: 489 ttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 997 ttgcagacgccgacacggtcgtcgcgggtgggagcccagta 957
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 224 bits (113), Expect = 2e-55 Identities = 329/401 (82%) Strand = Plus / Minus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1308 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1249 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1248 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1189 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1188 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1129 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1128 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1069 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccggg 428 |||||||||||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct: 1068 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatggattggcctggg 1009 Query: 429 aaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgccc 488 ||| |||| || | | | || | | ||||||| ||||||||||||||||||||||| ||| Sbjct: 1008 aagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtgcggaagataccc 949 Query: 489 ttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 948 ttgcagacgccgacacggtcgtcgcgggtgggagcccagta 908
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 224 bits (113), Expect = 2e-55 Identities = 329/401 (82%) Strand = Plus / Minus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1346 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1287 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1286 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1227 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1226 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1167 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1166 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1107 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccggg 428 |||||||||||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct: 1106 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatggattggcctggg 1047 Query: 429 aaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgccc 488 ||| |||| || | | | || | | ||||||| ||||||||||||||||||||||| ||| Sbjct: 1046 aagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtgcggaagataccc 987 Query: 489 ttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 986 ttgcagacgccgacacggtcgtcgcgggtgggagcccagta 946
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 224 bits (113), Expect = 2e-55 Identities = 329/401 (82%) Strand = Plus / Minus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1345 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1286 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1285 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1226 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1225 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1166 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1165 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1106 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccggg 428 |||||||||||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct: 1105 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatggattggcctggg 1046 Query: 429 aaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgccc 488 ||| |||| || | | | || | | ||||||| ||||||||||||||||||||||| ||| Sbjct: 1045 aagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtgcggaagataccc 986 Query: 489 ttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 985 ttgcagacgccgacacggtcgtcgcgggtgggagcccagta 945
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 224 bits (113), Expect = 2e-55 Identities = 329/401 (82%) Strand = Plus / Minus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1129 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1070 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1069 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1010 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1009 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 950 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 949 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 890 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccggg 428 |||||||||||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct: 889 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatggattggcctggg 830 Query: 429 aaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgccc 488 ||| |||| || | | | || | | ||||||| ||||||||||||||||||||||| ||| Sbjct: 829 aagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtgcggaagataccc 770 Query: 489 ttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 769 ttgcagacgccgacacggtcgtcgcgggtgggagcccagta 729
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 224 bits (113), Expect = 2e-55 Identities = 329/401 (82%) Strand = Plus / Minus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1350 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1291 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1290 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1231 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1230 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1171 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1170 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1111 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccggg 428 |||||||||||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct: 1110 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatggattggcctggg 1051 Query: 429 aaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgccc 488 ||| |||| || | | | || | | ||||||| ||||||||||||||||||||||| ||| Sbjct: 1050 aagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtgcggaagataccc 991 Query: 489 ttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 990 ttgcagacgccgacacggtcgtcgcgggtgggagcccagta 950
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 224 bits (113), Expect = 2e-55 Identities = 329/401 (82%) Strand = Plus / Minus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1105 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccggg 428 |||||||||||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct: 1104 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatggattggcctggg 1045 Query: 429 aaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgccc 488 ||| |||| || | | | || | | ||||||| ||||||||||||||||||||||| ||| Sbjct: 1044 aagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtgcggaagataccc 985 Query: 489 ttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 984 ttgcagacgccgacacggtcgtcgcgggtgggagcccagta 944
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 216 bits (109), Expect = 6e-53 Identities = 328/401 (81%) Strand = Plus / Minus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 1314 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1255 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1254 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1195 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 |||||||| |||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 1194 ccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1135 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 1134 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 1075 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccggg 428 |||||||||||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct: 1074 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatggattggcctggg 1015 Query: 429 aaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgccc 488 ||| |||| || | | | || | | ||||||| ||||||||||||||||||||||| ||| Sbjct: 1014 aagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtgcggaagataccc 955 Query: 489 ttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 954 ttgcagacgccgacacggtcgtcgcgggtgggagcccagta 914
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 216 bits (109), Expect = 6e-53 Identities = 328/401 (81%) Strand = Plus / Minus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 563 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 504 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 503 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 444 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 |||||||| |||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 443 ccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 384 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 383 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 324 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccggg 428 |||||||||||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct: 323 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatggattggcctggg 264 Query: 429 aaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgccc 488 ||| |||| || | | | || | | ||||||| ||||||||||||||||||||||| ||| Sbjct: 263 aagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtgcggaagataccc 204 Query: 489 ttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 203 ttgcagacgccgacacggtcgtcgcgggtgggagcccagta 163
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 168 bits (85), Expect = 1e-38 Identities = 151/173 (87%) Strand = Plus / Minus Query: 357 acccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatg 416 |||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||| Sbjct: 1134 acccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatg 1075 Query: 417 gactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtg 476 ||||| || ||||||||||| || | | | || || | |||||| |||||||||||| Sbjct: 1074 gactgtcctgggaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtc 1015 Query: 477 cggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 1014 tggaagatacccttgcagacgccgatacggtcctcgcgggtgggcgcccagta 962 Score = 97.6 bits (49), Expect = 4e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 ||||||||||||||||| || |||||||||||||| ||||||||||||||||||| | | Sbjct: 1287 agctgcacacgcttgacattgtcctgctcctggacaagcatgtggccgtactccagcaac 1228 Query: 264 ttctctatggtcatcttgggctggtcgaa 292 ||||| | |||||||||||||| ||||| Sbjct: 1227 ttctccaccgtcatcttgggctgctcgaa 1199
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 167 bits (84), Expect = 5e-38 Identities = 138/156 (88%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||||||||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 619 gtcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 560 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 559 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 500 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 499 cacgccgatgcggtcgtcgcgggtgggcgcccagta 464
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 167 bits (84), Expect = 5e-38 Identities = 138/156 (88%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||||||||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 627 gtcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 568 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 567 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 508 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 |||||||||||||||||| ||||||||||||||||| Sbjct: 507 cacgccgatgcggtcctcccgggtgggcgcccagta 472
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 153 bits (77), Expect = 7e-34 Identities = 212/257 (82%) Strand = Plus / Minus Query: 180 gcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacc 239 |||||||| |||||||||||||| |||||||| | ||| ||||||||||||||||| ||| Sbjct: 952 gcctcgctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcacc 893 Query: 240 agcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggc 299 ||||||| ||||||||||| ||||| || | ||||||||||||||| ||||||| ||| Sbjct: 892 agcatgttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggc 833 Query: 300 ggcccctccctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacc 359 ||||||||| |||||| || || | |||| | | || |||||||| ||| | | | Sbjct: 832 ggcccctccagcgagttcaccagcctcttgcccacgccgtcgacgccgatttcggcaatc 773 Query: 360 cacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggac 419 ||||| | ||||||||||||||| |||| |||| ||| || ||||||||||| ||||| Sbjct: 772 cacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatggat 713 Query: 420 tgccccgggaaggtgtc 436 || || ||||||||||| Sbjct: 712 tggccggggaaggtgtc 696
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 153 bits (77), Expect = 7e-34 Identities = 212/257 (82%) Strand = Plus / Minus Query: 180 gcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacc 239 |||||||| |||||||||||||| |||||||| | ||| ||||||||||||||||| ||| Sbjct: 1146 gcctcgctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcacc 1087 Query: 240 agcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggc 299 ||||||| ||||||||||| ||||| || | ||||||||||||||| ||||||| ||| Sbjct: 1086 agcatgttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggc 1027 Query: 300 ggcccctccctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacc 359 ||||||||| |||||| || || | |||| | | || |||||||| ||| | | | Sbjct: 1026 ggcccctccagcgagttcaccagcctcttgcccacgccgtcgacgccgatttcggcaatc 967 Query: 360 cacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggac 419 ||||| | ||||||||||||||| |||| |||| ||| || ||||||||||| ||||| Sbjct: 966 cacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatggat 907 Query: 420 tgccccgggaaggtgtc 436 || || ||||||||||| Sbjct: 906 tggccggggaaggtgtc 890
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 637 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 578 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 577 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 518 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 517 cacgccgatgcggtcgtcgcgggtgggcgcccagta 482
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 633 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 574 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 573 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 514 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 513 cacgccgatgcggtcgtcgcgggtgggcgcccagta 478
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 576 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 575 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 516 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 515 cacgccgatgcggtcgtcgcgggtgggcgcccagta 480
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 576 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 575 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 516 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 515 cacgccgatgcggtcgtcgcgggtgggcgcccagta 480
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 639 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 580 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 579 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 520 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 519 cacgccgatgcggtcgtcgcgggtgggcgcccagta 484
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 576 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 575 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 516 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 515 cacgccgatgcggtcgtcgcgggtgggcgcccagta 480
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 576 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 575 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 516 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 515 cacgccgatgcggtcgtcgcgggtgggcgcccagta 480
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 576 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 575 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 516 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 515 cacgccgatgcggtcgtcgcgggtgggcgcccagta 480
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 576 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 575 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 516 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 515 cacgccgatgcggtcgtcgcgggtgggcgcccagta 480
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 637 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 578 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 577 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 518 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 517 cacgccgatgcggtcgtcgcgggtgggcgcccagta 482
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 635 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 576 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 575 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 516 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 515 cacgccgatgcggtcgtcgcgggtgggcgcccagta 480
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 151 bits (76), Expect = 3e-33 Identities = 136/156 (87%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 639 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 580 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||||||||||||||||||||||| Sbjct: 579 gtcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgca 520 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 519 cacgccgatgcggtcgtcgcgggtgggcgcccagta 484
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 147 bits (74), Expect = 4e-32 Identities = 148/173 (85%) Strand = Plus / Minus Query: 357 acccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatg 416 ||||||||||||||||| ||||||||||||| || ||||| || ||||||||||||||| Sbjct: 1124 acccacttgcgcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatg 1065 Query: 417 gactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtg 476 ||||| || ||||| ||||| || | | | || || | |||||| |||||||||||| Sbjct: 1064 gactgtcctgggaangtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtc 1005 Query: 477 cggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 1004 tggaagatacccttgcagacgccgatacggtcctcgcgggtgggcgcccagta 952 Score = 97.6 bits (49), Expect = 4e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 ||||||||||||||||| || |||||||||||||| ||||||||||||||||||| | | Sbjct: 1277 agctgcacacgcttgacattgtcctgctcctggacaagcatgtggccgtactccagcaac 1218 Query: 264 ttctctatggtcatcttgggctggtcgaa 292 ||||| | |||||||||||||| ||||| Sbjct: 1217 ttctccaccgtcatcttgggctgctcgaa 1189
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 145 bits (73), Expect = 2e-31 Identities = 229/281 (81%) Strand = Plus / Plus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 108311 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 108370 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 108371 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 108430 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 108431 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 108490 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 108491 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 108550 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaa 409 |||||||||||||| || || || || || ||||||||||| Sbjct: 108551 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaa 108591 Score = 109 bits (55), Expect = 9e-21 Identities = 104/120 (86%), Gaps = 4/120 (3%) Strand = Plus / Plus Query: 171 ccgagcgccgcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgc 230 |||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||| Sbjct: 112186 ccgagcgccgcctcgctgaggtacttatcggcgagccgcaccctcttgacgttctcctgc 112245 Query: 231 tcctggaccagcatgt----ggccgtactccatgagcttctctatggtcatcttgggctg 286 ||| |||||||||| | ||||||||||| ||||| || || |||||||||||||| Sbjct: 112246 tccctcaccagcatgtgccggcccgtactccatcagcttgtcgatcgtcatcttgggctg 112305 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 457 cgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatgcggtcctcgcggg 516 |||| ||||| |||||| |||||||||||||| |||||||||| |||||||||||||||| Sbjct: 112435 cgtcggggaccttgtcgctgcggaagatgcccctgcacacgccaatgcggtcctcgcggg 112494 Query: 517 tgggcgcccagta 529 |||| |||||||| Sbjct: 112495 tgggagcccagta 112507 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 454 cctcgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatgcggtcctcgc 513 ||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||| |||| Sbjct: 108728 cctcgtcggggacgttgtcggtgcggaagatacccttgcagacgccgacacggtcgtcgc 108787 Query: 514 gggtgggcgcccagta 529 ||||||| |||||||| Sbjct: 108788 gggtgggagcccagta 108803 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 332 gatgttctccacgccgatctcgccgacccacttgcgcacctcgtcgtcgtacacccgtgc 391 |||||||||||| |||||||| | |||||| |||||||||||| |||||||||| || Sbjct: 112344 gatgttctccaccccgatctccgccacccaccgccgcacctcgtcgccgtacacccgcgc 112403 Query: 392 ccgcagcgcgccgaagaagtcgatgg 417 ||||||||| |||||||||||||||| Sbjct: 112404 ccgcagcgccccgaagaagtcgatgg 112429
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 145 bits (73), Expect = 2e-31 Identities = 229/281 (81%) Strand = Plus / Plus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 30188 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 30247 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 30248 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 30307 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 30308 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 30367 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 30368 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 30427 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaa 409 |||||||||||||| || || || || || ||||||||||| Sbjct: 30428 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaa 30468 Score = 109 bits (55), Expect = 9e-21 Identities = 104/120 (86%), Gaps = 4/120 (3%) Strand = Plus / Plus Query: 171 ccgagcgccgcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgc 230 |||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||| Sbjct: 34063 ccgagcgccgcctcgctgaggtacttatcggcgagccgcaccctcttgacgttctcctgc 34122 Query: 231 tcctggaccagcatgt----ggccgtactccatgagcttctctatggtcatcttgggctg 286 ||| |||||||||| | ||||||||||| ||||| || || |||||||||||||| Sbjct: 34123 tccctcaccagcatgtgccggcccgtactccatcagcttgtcgatcgtcatcttgggctg 34182 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 457 cgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatgcggtcctcgcggg 516 |||| ||||| |||||| |||||||||||||| |||||||||| |||||||||||||||| Sbjct: 34312 cgtcggggaccttgtcgctgcggaagatgcccctgcacacgccaatgcggtcctcgcggg 34371 Query: 517 tgggcgcccagta 529 |||| |||||||| Sbjct: 34372 tgggagcccagta 34384 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 454 cctcgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatgcggtcctcgc 513 ||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||| |||| Sbjct: 30605 cctcgtcggggacgttgtcggtgcggaagatacccttgcagacgccgacacggtcgtcgc 30664 Query: 514 gggtgggcgcccagta 529 ||||||| |||||||| Sbjct: 30665 gggtgggagcccagta 30680 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 332 gatgttctccacgccgatctcgccgacccacttgcgcacctcgtcgtcgtacacccgtgc 391 |||||||||||| |||||||| | |||||| |||||||||||| |||||||||| || Sbjct: 34221 gatgttctccaccccgatctccgccacccaccgccgcacctcgtcgccgtacacccgcgc 34280 Query: 392 ccgcagcgcgccgaagaagtcgatgg 417 ||||||||| |||||||||||||||| Sbjct: 34281 ccgcagcgccccgaagaagtcgatgg 34306
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 145 bits (73), Expect = 2e-31 Identities = 229/281 (81%) Strand = Plus / Plus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 28303450 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 28303509 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 28303510 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 28303569 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 28303570 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 28303629 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 28303630 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 28303689 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaa 409 |||||||||||||| || || || || || ||||||||||| Sbjct: 28303690 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaa 28303730 Score = 109 bits (55), Expect = 9e-21 Identities = 104/120 (86%), Gaps = 4/120 (3%) Strand = Plus / Plus Query: 171 ccgagcgccgcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgc 230 |||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||| Sbjct: 28307325 ccgagcgccgcctcgctgaggtacttatcggcgagccgcaccctcttgacgttctcctgc 28307384 Query: 231 tcctggaccagcatgt----ggccgtactccatgagcttctctatggtcatcttgggctg 286 ||| |||||||||| | ||||||||||| ||||| || || |||||||||||||| Sbjct: 28307385 tccctcaccagcatgtgccggcccgtactccatcagcttgtcgatcgtcatcttgggctg 28307444 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 457 cgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatgcggtcctcgcggg 516 |||| ||||| |||||| |||||||||||||| |||||||||| |||||||||||||||| Sbjct: 28307574 cgtcggggaccttgtcgctgcggaagatgcccctgcacacgccaatgcggtcctcgcggg 28307633 Query: 517 tgggcgcccagta 529 |||| |||||||| Sbjct: 28307634 tgggagcccagta 28307646 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 454 cctcgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatgcggtcctcgc 513 ||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||| |||| Sbjct: 28303867 cctcgtcggggacgttgtcggtgcggaagatacccttgcagacgccgacacggtcgtcgc 28303926 Query: 514 gggtgggcgcccagta 529 ||||||| |||||||| Sbjct: 28303927 gggtgggagcccagta 28303942 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 332 gatgttctccacgccgatctcgccgacccacttgcgcacctcgtcgtcgtacacccgtgc 391 |||||||||||| |||||||| | |||||| |||||||||||| |||||||||| || Sbjct: 28307483 gatgttctccaccccgatctccgccacccaccgccgcacctcgtcgccgtacacccgcgc 28307542 Query: 392 ccgcagcgcgccgaagaagtcgatgg 417 ||||||||| |||||||||||||||| Sbjct: 28307543 ccgcagcgccccgaagaagtcgatgg 28307568
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 145 bits (73), Expect = 2e-31 Identities = 229/281 (81%) Strand = Plus / Plus Query: 129 ccgtagaaggcaccggtcttcatggcgtcgtcgttggcttggccgagcgccgcctcgctg 188 |||||||||| ||| ||||||||||||||| ||| || | || || || |||||||| Sbjct: 28285899 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 28285958 Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 | ||||| || || ||||||||||||||||||||||||||||||| || ||||||| Sbjct: 28285959 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 28286018 Query: 249 ccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggcggcccctcc 308 ||||||||||||||||| || || |||||||||||||| |||||| || || |||||| Sbjct: 28286019 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 28286078 Query: 309 ctcgagttgacgaggcgcttggagatgttctccacgccgatctcgccgacccacttgcgc 368 |||||||| || || | |||| ||||||||||| || | || |||||||||||| Sbjct: 28286079 ctcgagttcaccagcctcttgccaatgttctccacacccgtgtccgacacccacttgcgc 28286138 Query: 369 acctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaa 409 |||||||||||||| || || || || || ||||||||||| Sbjct: 28286139 acctcgtcgtcgtaaacacgggcacgaagagcgccgaagaa 28286179 Score = 109 bits (55), Expect = 9e-21 Identities = 104/120 (86%), Gaps = 4/120 (3%) Strand = Plus / Plus Query: 171 ccgagcgccgcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgc 230 |||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||| Sbjct: 28289774 ccgagcgccgcctcgctgaggtacttatcggcgagccgcaccctcttgacgttctcctgc 28289833 Query: 231 tcctggaccagcatgt----ggccgtactccatgagcttctctatggtcatcttgggctg 286 ||| |||||||||| | ||||||||||| ||||| || || |||||||||||||| Sbjct: 28289834 tccctcaccagcatgtgccggcccgtactccatcagcttgtcgatcgtcatcttgggctg 28289893 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 457 cgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatgcggtcctcgcggg 516 |||| ||||| |||||| |||||||||||||| |||||||||| |||||||||||||||| Sbjct: 28290023 cgtcggggaccttgtcgctgcggaagatgcccctgcacacgccaatgcggtcctcgcggg 28290082 Query: 517 tgggcgcccagta 529 |||| |||||||| Sbjct: 28290083 tgggagcccagta 28290095 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 454 cctcgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatgcggtcctcgc 513 ||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||| |||| Sbjct: 28286316 cctcgtcggggacgttgtcggtgcggaagatacccttgcagacgccgacacggtcgtcgc 28286375 Query: 514 gggtgggcgcccagta 529 ||||||| |||||||| Sbjct: 28286376 gggtgggagcccagta 28286391 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 332 gatgttctccacgccgatctcgccgacccacttgcgcacctcgtcgtcgtacacccgtgc 391 |||||||||||| |||||||| | |||||| |||||||||||| |||||||||| || Sbjct: 28289932 gatgttctccaccccgatctccgccacccaccgccgcacctcgtcgccgtacacccgcgc 28289991 Query: 392 ccgcagcgcgccgaagaagtcgatgg 417 ||||||||| |||||||||||||||| Sbjct: 28289992 ccgcagcgccccgaagaagtcgatgg 28290017
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 143 bits (72), Expect = 7e-31 Identities = 135/156 (86%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 633 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 574 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||| ||||||||||||||||||| Sbjct: 573 gtcgacgagctggacgacgtgctcgtcggggacgccgtcgttgcggaagatgcccttgca 514 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 513 cacgccgatgcggtcgtcgcgggtgggcgcccagta 478
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 143 bits (72), Expect = 7e-31 Identities = 135/156 (86%) Strand = Plus / Minus Query: 374 gtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggt 433 ||||||||| |||| || || || ||||||||||||||||||||||| |||||||||| Sbjct: 633 gtcgtcgtataccctggcgcggagggcgccgaagaagtcgatggactggcccgggaaggc 574 Query: 434 gtccaccagcctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgca 493 ||| || ||| || ||| |||||| |||||| |||| ||||||||||||||||||| Sbjct: 573 gtcgacgagctggacgacgtgctcgtcggggacgccgtcgttgcggaagatgcccttgca 514 Query: 494 cacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||||||||||| |||||||||||||||||||| Sbjct: 513 cacgccgatgcggtcgtcgcgggtgggcgcccagta 478
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 139 bits (70), Expect = 1e-29 Identities = 262/326 (80%) Strand = Plus / Minus Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1346 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 1287 Query: 264 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 323 ||||| | |||||||| ||||| ||||| || ||||| |||| |||||| || || Sbjct: 1286 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 1227 Query: 324 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 383 | |||| |||||||| | ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1226 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 1167 Query: 384 acccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 443 ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct: 1166 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 1107 Query: 444 ctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatg 503 | || || | |||||| ||| |||||||| ||||||| |||||||| || ||||| Sbjct: 1106 tttacgacagactcgtcacagacattgtcggtctggaagatacccttgcagacaccgata 1047 Query: 504 cggtcctcgcgggtgggcgcccagta 529 ||||| || |||||||| |||||||| Sbjct: 1046 cggtcgtcacgggtgggagcccagta 1021
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 139 bits (70), Expect = 1e-29 Identities = 262/326 (80%) Strand = Plus / Minus Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1091 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 1032 Query: 264 ttctctatggtcatcttgggctggtcgaacgtgggcggcccctccctcgagttgacgagg 323 ||||| | |||||||| ||||| ||||| || ||||| |||| |||||| || || Sbjct: 1031 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 972 Query: 324 cgcttggagatgttctccacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 383 | |||| |||||||| | ||| | ||||||||||||||||||||| ||||||||| Sbjct: 971 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 912 Query: 384 acccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 443 ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct: 911 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 852 Query: 444 ctcaccacggcctcgtccgggacgttgtcggtgcggaagatgcccttgcacacgccgatg 503 | || || | |||||| ||| |||||||| ||||||| |||||||| || ||||| Sbjct: 851 tttacgacagactcgtcacagacattgtcggtctggaagatacccttgcagacaccgata 792 Query: 504 cggtcctcgcgggtgggcgcccagta 529 ||||| || |||||||| |||||||| Sbjct: 791 cggtcgtcacgggtgggagcccagta 766
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 129 bits (65), Expect = 1e-26 Identities = 146/173 (84%) Strand = Plus / Minus Query: 357 acccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatg 416 |||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||| Sbjct: 263 acccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatg 204 Query: 417 gactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtg 476 || || || ||||||||||| || | | | || |||| |||||| ||| |||||||| Sbjct: 203 gattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtcggtc 144 Query: 477 cggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||| |||||||| || ||||| ||||| ||||||||||| |||||||| Sbjct: 143 tggaagatacccttgcagacaccgatacggtcgtcgcgggtgggagcccagta 91 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 416 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 357 Query: 264 ttctctatggtcatcttgggctg 286 ||||| | |||||||| ||||| Sbjct: 356 ttctccactgtcatctttggctg 334
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 129 bits (65), Expect = 1e-26 Identities = 146/173 (84%) Strand = Plus / Minus Query: 357 acccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatg 416 |||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||| Sbjct: 1113 acccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatg 1054 Query: 417 gactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtcggtg 476 || || || ||||||||||| || | | | || |||| |||||| ||| |||||||| Sbjct: 1053 gattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtcggtc 994 Query: 477 cggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagta 529 ||||||| |||||||| || ||||| ||||| ||||||||||| |||||||| Sbjct: 993 tggaagatacccttgcagacaccgatacggtcgtcgcgggtgggagcccagta 941 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1266 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 1207 Query: 264 ttctctatggtcatcttgggctg 286 ||||| | |||||||| ||||| Sbjct: 1206 ttctccactgtcatctttggctg 1184
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 121 bits (61), Expect = 2e-24 Identities = 112/129 (86%) Strand = Plus / Minus Query: 180 gcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacc 239 |||||||| |||||||||||||| |||||||| | ||| ||||||||||| ||||| ||| Sbjct: 1253 gcctcgctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcacc 1194 Query: 240 agcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggc 299 ||||| | ||||||||||| ||||| || | ||||||||||||||| ||||||| ||| Sbjct: 1193 agcatattgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggc 1134 Query: 300 ggcccctcc 308 ||||||||| Sbjct: 1133 ggcccctcc 1125 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Minus Query: 342 acgccgatctcgccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcg 401 |||||||| ||| | | |||||| | ||||||||||||||| |||| |||| ||| || Sbjct: 1091 acgccgatttcggcaatccacttcctcacctcgtcgtcgtagaccctcgccctcagtgca 1032 Query: 402 ccgaagaagtcgatggactgccccgggaaggtgtc 436 ||||||||||| ||||| || || ||||||||||| Sbjct: 1031 ccgaagaagtcaatggattggccggggaaggtgtc 997
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 121 bits (61), Expect = 2e-24 Identities = 112/129 (86%) Strand = Plus / Minus Query: 180 gcctcgctgaggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggacc 239 |||||||| |||||||||||||| |||||||| | ||| ||||||||||| ||||| ||| Sbjct: 1116 gcctcgctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcacc 1057 Query: 240 agcatgtggccgtactccatgagcttctctatggtcatcttgggctggtcgaacgtgggc 299 ||||| | ||||||||||| ||||| || | ||||||||||||||| ||||||| ||| Sbjct: 1056 agcatattgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggc 997 Query: 300 ggcccctcc 308 ||||||||| Sbjct: 996 ggcccctcc 988 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Minus Query: 342 acgccgatctcgccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcg 401 |||||||| ||| | | |||||| | ||||||||||||||| |||| |||| ||| || Sbjct: 954 acgccgatttcggcaatccacttcctcacctcgtcgtcgtagaccctcgccctcagtgca 895 Query: 402 ccgaagaagtcgatggactgccccgggaaggtgtc 436 ||||||||||| ||||| || || ||||||||||| Sbjct: 894 ccgaagaagtcaatggattggccggggaaggtgtc 860
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 359 ccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 418 ||||| ||||||| |||||||||||| || || ||||| |||||||||||||| ||||| Sbjct: 2739 ccactggcgcaccatgtcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 2680 Query: 419 ctgccccgggaaggtgtccaccag 442 ||| || ||||||||||||||||| Sbjct: 2679 ctggccggggaaggtgtccaccag 2656 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 478 ggaagatgcccttgcacacgccgatgcggtcctcgcgggtggg 520 ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2370 ggaagatgcccatgcacacgccgatgcggtcctcgcgggtggg 2328 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 198 tcggcgagctgcacacgcttgacgttctcctgctc 232 ||||| |||||||| |||||||||||||||||||| Sbjct: 3239 tcggccagctgcacgcgcttgacgttctcctgctc 3205
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 359 ccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatgga 418 ||||| ||||||| |||||||||||| || || ||||| |||||||||||||| ||||| Sbjct: 1049 ccactggcgcaccatgtcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 990 Query: 419 ctgccccgggaaggtgtccaccag 442 ||| || ||||||||||||||||| Sbjct: 989 ctggccggggaaggtgtccaccag 966 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 478 ggaagatgcccttgcacacgccgatgcggtcctcgcgggtggg 520 ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 930 ggaagatgcccatgcacacgccgatgcggtcctcgcgggtggg 888 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 198 tcggcgagctgcacacgcttgacgttctcctgctc 232 ||||| |||||||| |||||||||||||||||||| Sbjct: 1207 tcggccagctgcacgcgcttgacgttctcctgctc 1173
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 204 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 263 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 210 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 151 Query: 264 ttctctatggtcatcttgggctg 286 ||||| | |||||||| ||||| Sbjct: 150 ttctcgactgtcatctttggctg 128 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 357 acccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 412 |||||||||||||||||||||||||||||||| || ||||| || ||||| ||||| Sbjct: 57 acccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 2
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 215 cttgacgttctcctgctcctggaccagcatgtggccgtactccatgagcttctctatggt 274 |||||||||||||||||||||||| |||||| ||||| | | |||||| || || || Sbjct: 1293 cttgacgttctcctgctcctggacaagcatgcctccgtagccaaggagcttatcaattgt 1234 Query: 275 catcttgggctg 286 |||||||||||| Sbjct: 1233 catcttgggctg 1222
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 478 ggaagatgcccttgcacacgccgatgcggtcctcgcgggtggg 520 ||||||| ||| |||| ||||||||||||||||| |||||||| Sbjct: 1859 ggaagattcccatgcagacgccgatgcggtcctcacgggtggg 1817 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Minus Query: 201 gcgagctgcacacgcttgacgttctcctgctc 232 ||||||||||| |||||||| ||||||||||| Sbjct: 2136 gcgagctgcacgcgcttgacattctcctgctc 2105 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 402 ccgaagaagtcgatggactgccccgggaagg 432 |||||||||||||| |||||||| ||||||| Sbjct: 1935 ccgaagaagtcgatcgactgcccggggaagg 1905
>gb|DQ123944.1| Coffea arabica x Coffea canephora clone HT-SSH2-H08 mRNA sequence Length = 488 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Minus Query: 219 acgttctcctgctcctggaccagcatgtggccgtac 254 |||||||||||||| ||||| ||||||| ||||||| Sbjct: 36 acgttctcctgctcttggacgagcatgttgccgtac 1
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Minus Query: 372 tcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaag 431 ||||| ||||| ||||| |||| || || |||||||| |||||||| || || |||||| Sbjct: 950 tcgtcatcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaag 891 Query: 432 gtgtc 436 ||||| Sbjct: 890 gtgtc 886
>gb|AC140331.2| Mus musculus BAC clone RP23-406J20 from chromosome 13, complete sequence Length = 192473 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 214 gcttgacgttctcctgctcctggaccagc 242 ||||||| |||||||| |||||||||||| Sbjct: 170620 gcttgacattctcctgttcctggaccagc 170592
>ref|XM_974982.1| PREDICTED: Mus musculus desmoplakin (Dsp), mRNA Length = 8280 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 214 gcttgacgttctcctgctcctggaccagc 242 ||||||| |||||||| |||||||||||| Sbjct: 4777 gcttgacattctcctgttcctggaccagc 4749
>ref|XM_912083.2| PREDICTED: Mus musculus desmoplakin, transcript variant 3 (Dsp), mRNA Length = 8583 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 214 gcttgacgttctcctgctcctggaccagc 242 ||||||| |||||||| |||||||||||| Sbjct: 4996 gcttgacattctcctgttcctggaccagc 4968
>ref|XM_621314.3| PREDICTED: Mus musculus desmoplakin, transcript variant 1 (Dsp), mRNA Length = 9592 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 214 gcttgacgttctcctgctcctggaccagc 242 ||||||| |||||||| |||||||||||| Sbjct: 5360 gcttgacattctcctgttcctggaccagc 5332
>gb|AC124549.5| Mus musculus BAC clone RP23-284E24 from 13, complete sequence Length = 199240 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 214 gcttgacgttctcctgctcctggaccagc 242 ||||||| |||||||| |||||||||||| Sbjct: 40085 gcttgacattctcctgttcctggaccagc 40057
>dbj|AK009006.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2300002E22 product:desmoplakin, full insert sequence Length = 1423 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 214 gcttgacgttctcctgctcctggaccagc 242 ||||||| |||||||| |||||||||||| Sbjct: 803 gcttgacattctcctgttcctggaccagc 775
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Minus Query: 372 tcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtcgatggactgccccgggaag 431 ||||| ||||| ||||| |||| || || |||||||| |||||||| || || |||||| Sbjct: 951 tcgtcatcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaag 892 Query: 432 gtgtc 436 ||||| Sbjct: 891 gtgtc 887
>gb|BC033467.1| Mus musculus desmoplakin, mRNA (cDNA clone IMAGE:4949004) Length = 2915 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 214 gcttgacgttctcctgctcctggaccagc 242 ||||||| |||||||| |||||||||||| Sbjct: 2607 gcttgacattctcctgttcctggaccagc 2579
>gb|AC161248.2| Mus musculus BAC clone RP24-530L5 from chromosome 12, complete sequence Length = 155861 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ggtgtccaccagcctcacca 450 |||||||||||||||||||| Sbjct: 136818 ggtgtccaccagcctcacca 136799
>gb|BC033474.1| Homo sapiens renin, mRNA (cDNA clone MGC:34221 IMAGE:5188566), complete cds Length = 1475 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 956 ctccatgagcttctctatgg 937
>gb|AY664490.1| Macaca fascicularis renin (REN) mRNA, complete cds Length = 1280 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 989 ctccatgagcttctctatgg 970
>gb|BC047752.1| Homo sapiens renin, mRNA (cDNA clone MGC:54147 IMAGE:5590211), complete cds Length = 1471 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 959 ctccatgagcttctctatgg 940
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 40.1 bits (20), Expect = 7.2 Identities = 74/92 (80%) Strand = Plus / Minus Query: 189 aggtacttgtcggcgagctgcacacgcttgacgttctcctgctcctggaccagcatgtgg 248 ||||||||||| || | ||| || | ||| || ||||| ||||| || || ||||||| | Sbjct: 1332 aggtacttgtcagctaactgaactctcttaacattctcttgctcttgaacaagcatgttg 1273 Query: 249 ccgtactccatgagcttctctatggtcatctt 280 |||||||| | |||||| || || |||||||| Sbjct: 1272 ccgtactcgaggagcttatcgatagtcatctt 1241
>gb|AC124814.10| Mus musculus chromosome 1, clone RP24-119P5, complete sequence Length = 162020 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 catatatatagtgcatgcatgcat 101 ||||| |||||||||||||||||| Sbjct: 122744 catatgtatagtgcatgcatgcat 122721
>ref|NM_001032916.1| Macaca mulatta prorenin (REN), mRNA Length = 1461 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 974 ctccatgagcttctctatgg 955
>ref|XM_743857.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g05590) partial mRNA Length = 720 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ccgtactccatgagcttctc 268 |||||||||||||||||||| Sbjct: 212 ccgtactccatgagcttctc 193
>gb|L00071.1|HUMREN08 Human renin gene, exon 8 Length = 172 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 124 ctccatgagcttctctatgg 105
>gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, complete sequence Length = 198453 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 catatatatagtgcatgcat 97 |||||||||||||||||||| Sbjct: 31511 catatatatagtgcatgcat 31492
>ref|NM_000537.2| Homo sapiens renin (REN), mRNA Length = 1461 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 974 ctccatgagcttctctatgg 955
>emb|AL592146.8| Human DNA sequence from clone RP11-74C13 on chromosome 1 Contains the SOX13 gene for SOX13 SRY (sex determining region Y)-box 13, two novel genes, a novel gene (FLJ10761), the 3' end of the REN gene for renin and two CpG islands, complete sequence Length = 101862 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 95051 ctccatgagcttctctatgg 95070
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 cccgtgcccgcagcgcgccg 404 |||||||||||||||||||| Sbjct: 2456174 cccgtgcccgcagcgcgccg 2456155
>emb|CR933822.8| Zebrafish DNA sequence from clone DKEY-30F7 in linkage group 19, complete sequence Length = 187377 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 tatatagtgcatgcatgcat 101 |||||||||||||||||||| Sbjct: 65570 tatatagtgcatgcatgcat 65551
>emb|X00063.1|HSRENK Human kidney mRNA fragment for renin (aa 105-401) Length = 1096 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 609 ctccatgagcttctctatgg 590
>emb|CR926484.1| Pongo pygmaeus mRNA; cDNA DKFZp469I191 (from clone DKFZp469I191) Length = 1474 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 974 ctccatgagcttctctatgg 955
>emb|CR536498.1| Homo sapiens full open reading frame cDNA clone RZPDo834A0620D for gene REN, renin; complete cds, incl. stopcodon Length = 1221 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 930 ctccatgagcttctctatgg 911
>gb|AY436324.1| Homo sapiens renin (REN) gene, complete cds Length = 14148 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 11638 ctccatgagcttctctatgg 11619
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 ccacggcctcgtccgggacg 467 |||||||||||||||||||| Sbjct: 20046 ccacggcctcgtccgggacg 20027
>emb|AJ132342.1|CJA132342 Callithrix jacchus mRNA for preprorenin Length = 1203 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 912 ctccatgagcttctctatgg 893
>emb|AL589679.14| Mouse DNA sequence from clone RP23-189A16 on chromosome 13 Contains the 3' end of the Csh1 gene for chorionic somatomammotropin hormone 1, two genes for novel proteins similar to chorionic somatomammotropin hormone 1 (Csh1), the Prlpi gene for prolactin-like protein I (Prlpj, decidualin), the Csh2 gene for chorionic somatomammotropin hormone 2, the gene for protein 1600016E11RIK similar to prolactin and a novel gene (4930511O05Rik), complete sequence Length = 207737 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 aaatagtccaacatatatatagtg 90 ||||||||||| |||||||||||| Sbjct: 162426 aaatagtccaaaatatatatagtg 162403
>emb|CR857478.1| Pongo pygmaeus mRNA; cDNA DKFZp469O0929 (from clone DKFZp469O0929) Length = 2747 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 ggtgtccaccagcctcacca 450 |||||||||||||||||||| Sbjct: 224 ggtgtccaccagcctcacca 243
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 249 ccgtactccatgagcttctctatggtcatctt 280 |||||||| | ||||||||| ||||||||||| Sbjct: 495 ccgtactcgaggagcttctcaatggtcatctt 464
>gb|M10151.1|HUMRENA4 Homo sapiens renin (REN) gene, exons 6, 7, 8, and 9 Length = 3057 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 2172 ctccatgagcttctctatgg 2153
>gb|AF449411.1| Myxococcus xanthus cosmid pREG3E1, complete sequence Length = 36615 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 cctcgtccgggacgttgtcg 473 |||||||||||||||||||| Sbjct: 34609 cctcgtccgggacgttgtcg 34590
>gb|AC024259.17| Homo sapiens chromosome 7 clone RP11-105B19, complete sequence Length = 177303 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 catatatatagtgcatgcat 97 |||||||||||||||||||| Sbjct: 68633 catatatatagtgcatgcat 68652
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 cacgccgatctcgccgaccc 360 |||||||||||||||||||| Sbjct: 2558497 cacgccgatctcgccgaccc 2558516
>gb|AC154224.1| Mus musculus BAC clone RP24-141J15 from chromosome 13, complete sequence Length = 146998 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 aacatatatatagtgcatgc 95 |||||||||||||||||||| Sbjct: 109 aacatatatatagtgcatgc 90
>gb|AF193454.1|F193446S09 Pan troglodytes renin (REN) gene, exon 8 Length = 142 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 112 ctccatgagcttctctatgg 93
>gb|AC098590.3| Homo sapiens BAC clone RP11-324J13 from 4, complete sequence Length = 157544 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 acatatatatagtgcatgcatgca 100 ||||||||||||| |||||||||| Sbjct: 121059 acatatatatagtacatgcatgca 121036
>ref|NM_001009122.1| Pan troglodytes renin (REN), mRNA Length = 1221 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 930 ctccatgagcttctctatgg 911
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 cgcgccgaagaagtcgatgg 417 |||||||||||||||||||| Sbjct: 2367826 cgcgccgaagaagtcgatgg 2367845 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 cgcgccgaagaagtcgatgg 417 |||||||||||||||||||| Sbjct: 425250 cgcgccgaagaagtcgatgg 425231
>gb|AY662332.2| Macaca mulatta prorenin (REN) mRNA, complete cds Length = 1461 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ctccatgagcttctctatgg 273 |||||||||||||||||||| Sbjct: 974 ctccatgagcttctctatgg 955
>emb|BX936423.12| Zebrafish DNA sequence from clone DKEY-174M14 in linkage group 20, complete sequence Length = 170767 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 tgagcttctctatggtcatcttgg 282 |||||||||| ||||||||||||| Sbjct: 59941 tgagcttctcaatggtcatcttgg 59964
>gb|AC154184.1| Mus musculus BAC clone RP24-67K24 from 13, complete sequence Length = 151468 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 aacatatatatagtgcatgc 95 |||||||||||||||||||| Sbjct: 19290 aacatatatatagtgcatgc 19309
>emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chromosome 12, complete sequence Length = 224188 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ggtgtccaccagcctcacca 450 |||||||||||||||||||| Sbjct: 69683 ggtgtccaccagcctcacca 69664
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 249 ccgtactccatgagcttctctatggtcatctt 280 |||||||| | ||||||||| ||||||||||| Sbjct: 1255 ccgtactcgaggagcttctcaatggtcatctt 1224
>emb|AL805929.7| Mouse DNA sequence from clone RP23-252O5 on chromosome X, complete sequence Length = 175802 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tgcatgcatgcatcttaagt 108 |||||||||||||||||||| Sbjct: 22325 tgcatgcatgcatcttaagt 22306 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,703,890 Number of Sequences: 3902068 Number of extensions: 3703890 Number of successful extensions: 71744 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71052 Number of HSP's gapped (non-prelim): 643 length of query: 529 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 506 effective length of database: 17,143,297,704 effective search space: 8674508638224 effective search space used: 8674508638224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)