ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62p10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FIBP_ADE07 (P15141) Fiber protein (pIV) 30 3.2
2ADY4_YEAST (Q05955) Accumulates dyads protein 4 29 4.2

>FIBP_ADE07 (P15141) Fiber protein (pIV)|
          Length = 343

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 245 NYYSSSCYVVKKDHSVFPIDL 307
           NY   +CY    DH+ FPID+
Sbjct: 271 NYIYGTCYYTASDHTAFPIDI 291



to top

>ADY4_YEAST (Q05955) Accumulates dyads protein 4|
          Length = 493

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 135 NECKKNLLIHHHQTHQPRFPRIVNSKQET 221
           N+C ++L  +H +T+Q R PRI+  K +T
Sbjct: 414 NDCSESLDDYHPRTYQFRHPRIIIDKMKT 442


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,939,075
Number of Sequences: 219361
Number of extensions: 550186
Number of successful extensions: 893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top