>dbj|AB110204.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein,
            complete cds, contig of clone: OsNMCP1aSE2Nco-5 and
            12FPG031
          Length = 3708

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 262  ttgttatgtcgtgaagaaagaccatagcgttttcccaatcgatttgtttcgcct 315
            |||| |||| |||||||||||||||||| |||||||||| |||| ||| |||||
Sbjct: 3471 ttgtcatgtagtgaagaaagaccatagctttttcccaattgattggttccgcct 3418



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 368  tcacttcctgatggtgtcatgggcatc 394
            |||||||||||||||||||| ||||||
Sbjct: 3374 tcacttcctgatggtgtcataggcatc 3348



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                  
Query: 162  catcatcaccaaacacaccaacctagatttccaagaat 199
            |||||||||||| |||| ||||||||| ||||||||||
Sbjct: 3568 catcatcaccaagcaca-caacctagagttccaagaat 3532

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                      
Query: 262      ttgttatgtcgtgaagaaagaccatagcgttttcccaatcgatttgtttcgcct 315
                |||| |||| |||||||||||||||||| |||||||||| |||| ||| |||||
Sbjct: 29401192 ttgtcatgtagtgaagaaagaccatagctttttcccaattgattggttccgcct 29401245



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 368      tcacttcctgatggtgtcatgggcatc 394
                |||||||||||||||||||| ||||||
Sbjct: 29401289 tcacttcctgatggtgtcataggcatc 29401315



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                      
Query: 162      catcatcaccaaacacaccaacctagatttccaagaat 199
                |||||||||||| |||| ||||||||| ||||||||||
Sbjct: 29401095 catcatcaccaagcaca-caacctagagttccaagaat 29401131

>dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1311_H06
          Length = 139868

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                   
Query: 262   ttgttatgtcgtgaagaaagaccatagcgttttcccaatcgatttgtttcgcct 315
             |||| |||| |||||||||||||||||| |||||||||| |||| ||| |||||
Sbjct: 52064 ttgtcatgtagtgaagaaagaccatagctttttcccaattgattggttccgcct 52117



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 368   tcacttcctgatggtgtcatgggcatc 394
             |||||||||||||||||||| ||||||
Sbjct: 52161 tcacttcctgatggtgtcataggcatc 52187



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                   
Query: 162   catcatcaccaaacacaccaacctagatttccaagaat 199
             |||||||||||| |||| ||||||||| ||||||||||
Sbjct: 51967 catcatcaccaagcaca-caacctagagttccaagaat 52003

>ref|XM_467417.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3468

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 267  atgtcgtgaagaaagaccatagcgttttcccaatcgatttgtttcgcct 315
            |||| |||||||||||||||||| |||||||||| |||| ||| |||||
Sbjct: 3466 atgtagtgaagaaagaccatagctttttcccaattgattggttccgcct 3418



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 368  tcacttcctgatggtgtcatgggcatc 394
            |||||||||||||||||||| ||||||
Sbjct: 3374 tcacttcctgatggtgtcataggcatc 3348

>gb|AC091725.2| Gallus gallus clone WAG-105M15, complete sequence
          Length = 98793

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 375   ctgatggtgtcatgggcatcngcat 399
             |||||||||||||||||||| ||||
Sbjct: 13008 ctgatggtgtcatgggcatctgcat 12984

>gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromosome unknown, complete
             sequence
          Length = 239874

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 375   ctgatggtgtcatgggcatcngcat 399
             |||||||||||||||||||| ||||
Sbjct: 16976 ctgatggtgtcatgggcatctgcat 17000

>gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromosome unknown, complete
              sequence
          Length = 209348

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 375    ctgatggtgtcatgggcatcngcat 399
              |||||||||||||||||||| ||||
Sbjct: 164374 ctgatggtgtcatgggcatctgcat 164398

>gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8) gene, complete cds;
             germline T-cell receptor beta DJC region genes, partial
             cds
          Length = 151480

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   aacctaatcagatgcaattat 250
             |||||||||||||||||||||
Sbjct: 66339 aacctaatcagatgcaattat 66319

>gb|AC127684.5| Mus musculus BAC clone RP24-171J12 from chromosome 6, complete sequence
          Length = 178299

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 237    tcagatgcaattattattctt 257
              |||||||||||||||||||||
Sbjct: 108114 tcagatgcaattattattctt 108094

>ref|XM_636459.1| Dictyostelium discoideum RNA binding protein (DDB0218189), partial
           mRNA
          Length = 2360

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 163 atcatcaccaaacacaccaa 182
           ||||||||||||||||||||
Sbjct: 905 atcatcaccaaacacaccaa 924

>gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, complete sequence
          Length = 195511

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    tattcttcctcttgttatgt 270
              ||||||||||||||||||||
Sbjct: 147313 tattcttcctcttgttatgt 147294

>emb|AL021408.1|HS523C21 Human DNA sequence from clone RP3-523C21 on chromosome 6q23.1-23.3
             Contains two novels genes, complete sequence
          Length = 146831

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   aatcagatgcaattattatt 254
             ||||||||||||||||||||
Sbjct: 60250 aatcagatgcaattattatt 60231

>gb|AC022613.13| Homo sapiens chromosome 15, clone RP11-680F8, complete sequence
          Length = 188117

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   agatgcaattattattcttc 258
             ||||||||||||||||||||
Sbjct: 98067 agatgcaattattattcttc 98048

>emb|BX322588.8| Zebrafish DNA sequence from clone DKEYP-55C8 in linkage group 2, complete
              sequence
          Length = 192641

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    atgagtgcaagaaaaatcta 155
              ||||||||||||||||||||
Sbjct: 142089 atgagtgcaagaaaaatcta 142108

>emb|BX322607.6| Zebrafish DNA sequence from clone DKEYP-20F6 in linkage group 2, complete
              sequence
          Length = 167493

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    atgagtgcaagaaaaatcta 155
              ||||||||||||||||||||
Sbjct: 133455 atgagtgcaagaaaaatcta 133474

>gb|DQ015919.1| Homo sapiens tight junction protein 1 (zona occludens 1) (TJP1) gene,
             complete cds
          Length = 125625

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   agatgcaattattattcttc 258
             ||||||||||||||||||||
Sbjct: 81235 agatgcaattattattcttc 81254

>gb|AC130004.4| Homo sapiens 3 BAC RP11-237K2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 118699

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   atcatcaccaaacacaccaa 182
             ||||||||||||||||||||
Sbjct: 91707 atcatcaccaaacacaccaa 91688

>gb|AF128626.1|AF128626 Dictyostelium discoideum RNA binding protein PufA (pufA) gene,
            complete cds
          Length = 2940

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  atcatcaccaaacacaccaa 182
            ||||||||||||||||||||
Sbjct: 1309 atcatcaccaaacacaccaa 1328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,535,902
Number of Sequences: 3902068
Number of extensions: 3535902
Number of successful extensions: 62243
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62195
Number of HSP's gapped (non-prelim): 48
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)