ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62p09 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 86.3 bits (212), Expect = 2e-17 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -2 Query: 333 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 220 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 67.8 bits (164), Expect = 6e-12 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -2 Query: 333 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 220 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 66.6 bits (161), Expect = 1e-11 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -2 Query: 336 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 220 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 63.9 bits (154), Expect = 9e-11 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -2 Query: 333 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 226 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2| Length = 1019 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 105 WQRPIHLLIICHSQYSFLQW 46 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>ACSL4_MOUSE (Q9QUJ7) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 4) (LACS 4) (mACS4) Length = 711 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -2 Query: 141 VNISLNILSIPIWQRPIHLLIICHSQYSFLQWRLL 37 +N+ LN+L+I + P+HLLI +S F+ W L Sbjct: 1 MNLKLNVLTIILL--PVHLLITIYSALIFIPWYFL 33
>L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL)| Length = 1020 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 105 WQRPIHLLIICHSQYSFLQW 46 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>Y045_RICCN (Q92JM2) Hypothetical protein RC0045| Length = 108 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 7/53 (13%) Frame = -2 Query: 153 WACFVN-------ISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLXALLQTV 16 W F N I +NI++I I + H++I C + + W+++ ++ ++ Sbjct: 23 WIAFNNSKYPIKTIKINIININILGKINHMVIFCDNNIVIILWKIMVVIISSI 75
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +3 Query: 237 CRRRSLPLGRSSWHFGRCNLP 299 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>OXYR_SHEEP (Q28756) Oxytocin receptor (OT-R)| Length = 391 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = -2 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLL 37 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLAACYGLISFKIWQNL 231
>OXYR_BOVIN (P56449) Oxytocin receptor (OT-R)| Length = 391 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = -2 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLL 37 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLATCYGLISFKIWQNL 231
>OXYR_PIG (P32306) Oxytocin receptor (OT-R)| Length = 386 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = -2 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLL 37 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLAACYGLISFKIWQNL 231
>OXYR_MACMU (P56494) Oxytocin receptor (OT-R)| Length = 389 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = -2 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLL 37 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLAACYGLISFKIWQNL 231
>OXYR_HUMAN (P30559) Oxytocin receptor (OT-R)| Length = 389 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = -2 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLL 37 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLATCYGLISFKIWQNL 231
>OXYR_RAT (P70536) Oxytocin receptor (OT-R)| Length = 388 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = -2 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLL 37 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYVTWITLAVYIVPVIVLAACYGLISFKIWQNL 231
>OXYR_MOUSE (P97926) Oxytocin receptor (OT-R)| Length = 388 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = -2 Query: 195 MFYLPKSASHPSDCWACFV-----NISLNILSIPIWQRPIHLLIICHSQYSFLQWRLL 37 +F L + A DCWA F+ + +++ ++ P+ +L C+ SF W+ L Sbjct: 174 IFSLREVADGVFDCWAVFIQPWGPKAYVTWITLAVYIVPVIVLAACYGLISFKIWQNL 231
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = -2 Query: 363 TPTISCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 235 T S GGG G ++ T P G D N +D DG+ Sbjct: 38 TTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic| region Length = 1764 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -2 Query: 303 VPEGCTDQNAKNYDPTARSD 244 VPE TD N NYD T R D Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 307 ARAGRLHRPKCQELRPNGKERRR 239 A+ R R K Q LRPNG E+RR Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169
>ACSL4_HUMAN (O60488) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 4) (LACS 4) Length = 711 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -2 Query: 141 VNISLNILSIPIWQRPIHLLIICHSQYSFLQWRLL 37 + + LN+L+I + P+HLLI +S F+ W L Sbjct: 1 MKLKLNVLTIILL--PVHLLITIYSALIFIPWYFL 33
>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c| Length = 288 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +3 Query: 189 KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 293 ++S+ +S KGS + PL + W FG CN Sbjct: 4 RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38
>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)| (FGAM synthase I) Length = 220 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +1 Query: 163 WMRCGLR*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 324 ++RCG + ++K K AVV C VL G+L GA R+ +C Sbjct: 57 YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,155,547 Number of Sequences: 219361 Number of extensions: 1065276 Number of successful extensions: 2874 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2810 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2874 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
