Clone Information

BLAST Search Result

Clone Name	rbah62p04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY291061.1\| Zea mays photosystem II subunit PsbS precursor, m...	351	1e-93
2	gb\|AY104328.1\| Zea mays PCO078649 mRNA sequence	351	1e-93
3	ref\|NM_190784.1\| Oryza sativa (japonica cultivar-group), predic...	343	3e-91
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	343	3e-91
5	dbj\|AP003286.3\| Oryza sativa (japonica cultivar-group) genomic D...	343	3e-91
6	dbj\|AP003235.2\| Oryza sativa (japonica cultivar-group) genomic D...	343	3e-91
7	dbj\|AK104275.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	343	3e-91
8	dbj\|AK071827.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	343	3e-91
9	dbj\|AK058284.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	343	3e-91
10	ref\|XM_474468.1\| Oryza sativa (japonica cultivar-group), predic...	280	3e-72
11	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	280	3e-72
12	dbj\|AK071638.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	280	3e-72
13	emb\|AL732342.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	280	3e-72
14	emb\|AL606637.3\|OSJN00076 Oryza sativa genomic DNA, chromosome 4,...	280	3e-72
15	dbj\|D84392.1\| Oryza sativa (japonica cultivar-group) PSII-S mRNA...	264	2e-67
16	dbj\|AP003345.3\| Oryza sativa (japonica cultivar-group) genomic D...	72	2e-09
17	gb\|DQ067929.1\| Xerophyta humilis PSII subunit PsbS mRNA, partial...	68	2e-08
18	gb\|AC144738.2\| Oryza sativa (japonica cultivar-group) chromosome...	66	9e-08
19	gb\|AC130610.3\| Oryza sativa (japonica cultivar-group) chromosome...	66	9e-08
20	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	66	9e-08
21	ref\|NM_190839.1\| Oryza sativa (japonica cultivar-group), predic...	54	4e-04
22	gb\|AY836649.1\| Uncultured bacterium clone BD8802 pectate lyase g...	48	0.022
23	gb\|CP000112.1\| Desulfovibrio desulfuricans G20, complete genome	42	1.4
24	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	42	1.4
25	gb\|CP000267.1\| Rhodoferax ferrireducens DSM 15236, complete genome	42	1.4
26	dbj\|AP003381.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.4
27	dbj\|AP003023.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.4
28	gb\|AE017352.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	5.4
29	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	40	5.4
30	gb\|AY772449.1\| Rhodococcus equi strain 103+ heat shock protein (...	40	5.4
31	gb\|CP000360.1\| Acidobacteria bacterium Ellin345, complete genome	40	5.4
32	ref\|XM_567952.1\| Cryptococcus neoformans var. neoformans JEC21 h...	40	5.4
33	gb\|CP000090.1\| Ralstonia eutropha JMP134 chromosome 1, complete ...	40	5.4
34	emb\|BX572607.1\| Rhodopseudomonas palustris CGA009 complete genom...	40	5.4
35	gb\|CP000282.1\| Saccharophagus degradans 2-40, complete genome	40	5.4
36	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	40	5.4
37	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	5.4
38	gb\|AF163841.3\|AF163841 Myxococcus xanthus 4-oxalocrotonate decar...	40	5.4
39	dbj\|AP008226.1\| Thermus thermophilus HB8 genomic DNA, complete g...	40	5.4
40	emb\|AJ519722.2\|YEN519722 Yersinia enterocolitica partial cryptic...	40	5.4
41	emb\|AJ347753.1\|BCE347753 Burkholderia cepacia bcrA gene for mult...	40	5.4
42	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	40	5.4
43	gb\|AE017221.1\| Thermus thermophilus HB27, complete genome	40	5.4
44	gb\|L02354.1\|PDENQOURF Paracoccus denitrificans NADH dehydrogenas...	40	5.4

>gb|AY291061.1| Zea mays photosystem II subunit PsbS precursor, mRNA, complete cds;
           nuclear gene for chloroplast product
          Length = 1024

 Score =  351 bits (177), Expect = 1e-93
 Identities = 251/278 (90%)
 Strand = Plus / Minus

                                                                       
Query: 117 tcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaanaagacg 176
           ||||||||| |||||||| ||||  |||||||||||||||||||||||||||| |||| |
Sbjct: 799 tcctcgccgatgatgaacctgccattgccggggttgatggcggcgatgaagaagaagagg 740

                                                                       
Query: 177 acnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgatgttgagc 236
           || ||| |||  ||||||||||| |||| | ||||||||||||| |||||||||||||||
Sbjct: 739 acgttgaagatgacgagcggctctatctcgttgatgggcacccccgtctcgatgttgagc 680

                                                                       
Query: 237 tgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatncccagc 296
           ||||||||||||||||| |||||||||||||| ||||||||||||||||| |  ||||||
Sbjct: 679 tgcgccagcgcgcccttccccgtgatgatctcgccgatgatggagaaggccacgcccagc 620

                                                                       
Query: 297 tgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacctccc 356
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 619 tgcgccatccgccccacgaacagctcgttcgacttggtgaacccgaacagcggccctccc 560

                                                 
Query: 357 tcgctgaggccgagggctgagcggaagcctttgncggg 394
           |||||||||||||||||   ||||||||| ||| ||||
Sbjct: 559 tcgctgaggccgagggcgccgcggaagcccttgccggg 522

to top

>gb|AY104328.1| Zea mays PCO078649 mRNA sequence
          Length = 1252

 Score =  351 bits (177), Expect = 1e-93
 Identities = 251/278 (90%)
 Strand = Plus / Minus

                                                                       
Query: 117 tcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaanaagacg 176
           ||||||||| |||||||| ||||  |||||||||||||||||||||||||||| |||| |
Sbjct: 989 tcctcgccgatgatgaacctgccattgccggggttgatggcggcgatgaagaagaagagg 930

                                                                       
Query: 177 acnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgatgttgagc 236
           || ||| |||  ||||||||||| |||| | ||||||||||||| |||||||||||||||
Sbjct: 929 acgttgaagatgacgagcggctctatctcgttgatgggcacccccgtctcgatgttgagc 870

                                                                       
Query: 237 tgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatncccagc 296
           ||||||||||||||||| |||||||||||||| ||||||||||||||||| |  ||||||
Sbjct: 869 tgcgccagcgcgcccttccccgtgatgatctcgccgatgatggagaaggccacgcccagc 810

                                                                       
Query: 297 tgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacctccc 356
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 809 tgcgccatccgccccacgaacagctcgttcgacttggtgaacccgaacagcggccctccc 750

                                                 
Query: 357 tcgctgaggccgagggctgagcggaagcctttgncggg 394
           |||||||||||||||||   ||||||||| ||| ||||
Sbjct: 749 tcgctgaggccgagggcgccgcggaagcccttgccggg 712

to top

>ref|NM_190784.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 807

 Score =  343 bits (173), Expect = 3e-91
 Identities = 259/290 (89%)
 Strand = Plus / Minus

                                                                       
Query: 114 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaanaag 173
           ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 800 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 741

                                                                       
Query: 174 acgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgatgttg 233
           ||||| ||| |||| |||||||||||||||| | ||||||| || |||||||||||||||
Sbjct: 740 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 681

                                                                       
Query: 234 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatnccc 293
           |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || 
Sbjct: 680 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 621

                                                                       
Query: 294 agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 353
           |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 620 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 561

                                                             
Query: 354 ccctcgctgaggccgagggctgagcggaagcctttgncgggggcgatgac 403
           |||||||||||||| || || ||||||||||| ||| | |||||||||||
Sbjct: 560 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgac 511

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  343 bits (173), Expect = 3e-91
 Identities = 259/290 (89%)
 Strand = Plus / Minus

                                                                            
Query: 114      tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaanaag 173
                ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 37692662 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 37692603

                                                                            
Query: 174      acgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgatgttg 233
                ||||| ||| |||| |||||||||||||||| | ||||||| || |||||||||||||||
Sbjct: 37692602 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 37692543

                                                                            
Query: 234      agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatnccc 293
                |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || 
Sbjct: 37692542 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 37692483

                                                                            
Query: 294      agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 353
                |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 37692482 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 37692423

                                                                  
Query: 354      ccctcgctgaggccgagggctgagcggaagcctttgncgggggcgatgac 403
                |||||||||||||| || || ||||||||||| ||| | |||||||||||
Sbjct: 37692422 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgac 37692373



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                            
Query: 191      gagcggctcgatctngctgatgggcaccccggtctcgatgttgagctgcgccagcgcgcc 250
                ||||||||||||||  |||||||| |  |||||||| |||||||||||| |||| |||||
Sbjct: 33384227 gagcggctcgatctaactgatggggatgccggtctcaatgttgagctgccccagggcgcc 33384168

                           
Query: 251      cttgcccgtga 261
                |||||| ||||
Sbjct: 33384167 cttgccggtga 33384157



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 38       acaaacaggcaaagcacgtacgtac 62
                |||||| ||||||||||||||||||
Sbjct: 29256942 acaaaccggcaaagcacgtacgtac 29256918

to top

>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0677H08
          Length = 178830

 Score =  343 bits (173), Expect = 3e-91
 Identities = 259/290 (89%)
 Strand = Plus / Minus

                                                                          
Query: 114    tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaanaag 173
              ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 153136 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 153077

                                                                          
Query: 174    acgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgatgttg 233
              ||||| ||| |||| |||||||||||||||| | ||||||| || |||||||||||||||
Sbjct: 153076 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 153017

                                                                          
Query: 234    agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatnccc 293
              |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || 
Sbjct: 153016 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 152957

                                                                          
Query: 294    agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 353
              |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 152956 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 152897

                                                                
Query: 354    ccctcgctgaggccgagggctgagcggaagcctttgncgggggcgatgac 403
              |||||||||||||| || || ||||||||||| ||| | |||||||||||
Sbjct: 152896 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgac 152847

to top

>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039A07
          Length = 148892

 Score =  343 bits (173), Expect = 3e-91
 Identities = 259/290 (89%)
 Strand = Plus / Minus

                                                                         
Query: 114   tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaanaag 173
             ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 20963 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 20904

                                                                         
Query: 174   acgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgatgttg 233
             ||||| ||| |||| |||||||||||||||| | ||||||| || |||||||||||||||
Sbjct: 20903 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 20844

                                                                         
Query: 234   agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatnccc 293
             |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || 
Sbjct: 20843 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 20784

                                                                         
Query: 294   agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 353
             |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 20783 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 20724

                                                               
Query: 354   ccctcgctgaggccgagggctgagcggaagcctttgncgggggcgatgac 403
             |||||||||||||| || || ||||||||||| ||| | |||||||||||
Sbjct: 20723 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgac 20674

to top

>dbj|AK104275.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B11, full
           insert sequence
          Length = 1055

 Score =  343 bits (173), Expect = 3e-91
 Identities = 259/290 (89%)
 Strand = Plus / Minus

                                                                       
Query: 114 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaanaag 173
           ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 885 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 826

                                                                       
Query: 174 acgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgatgttg 233
           ||||| ||| |||| |||||||||||||||| | ||||||| || |||||||||||||||
Sbjct: 825 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 766

                                                                       
Query: 234 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatnccc 293
           |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || 
Sbjct: 765 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 706

                                                                       
Query: 294 agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 353
           |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 705 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 646

                                                             
Query: 354 ccctcgctgaggccgagggctgagcggaagcctttgncgggggcgatgac 403
           |||||||||||||| || || ||||||||||| ||| | |||||||||||
Sbjct: 645 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgac 596

to top

>dbj|AK071827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118A05, full
           insert sequence
          Length = 1057

 Score =  343 bits (173), Expect = 3e-91
 Identities = 259/290 (89%)
 Strand = Plus / Minus

                                                                       
Query: 114 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaanaag 173
           ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 888 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 829

                                                                       
Query: 174 acgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgatgttg 233
           ||||| ||| |||| |||||||||||||||| | ||||||| || |||||||||||||||
Sbjct: 828 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 769

                                                                       
Query: 234 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatnccc 293
           |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || 
Sbjct: 768 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 709

                                                                       
Query: 294 agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 353
           |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 708 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 649

                                                             
Query: 354 ccctcgctgaggccgagggctgagcggaagcctttgncgggggcgatgac 403
           |||||||||||||| || || ||||||||||| ||| | |||||||||||
Sbjct: 648 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgac 599

to top

>dbj|AK058284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D09, full
           insert sequence
          Length = 1064

 Score =  343 bits (173), Expect = 3e-91
 Identities = 259/290 (89%)
 Strand = Plus / Minus

                                                                       
Query: 114 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaanaag 173
           ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 885 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 826

                                                                       
Query: 174 acgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgatgttg 233
           ||||| ||| |||| |||||||||||||||| | ||||||| || |||||||||||||||
Sbjct: 825 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 766

                                                                       
Query: 234 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatnccc 293
           |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || 
Sbjct: 765 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 706

                                                                       
Query: 294 agctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcggacct 353
           |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || 
Sbjct: 705 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 646

                                                             
Query: 354 ccctcgctgaggccgagggctgagcggaagcctttgncgggggcgatgac 403
           |||||||||||||| || || ||||||||||| ||| | |||||||||||
Sbjct: 645 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgac 596

to top

>ref|XM_474468.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 747

 Score =  280 bits (141), Expect = 3e-72
 Identities = 225/255 (88%)
 Strand = Plus / Minus

                                                                       
Query: 110 gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 169
           ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 741 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 682

                                                                       
Query: 170 naagacgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgat 229
            |||| ||  ||| |||| | |||||||||||||| | ||||||| || |||||||||||
Sbjct: 681 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 622

                                                                       
Query: 230 gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 289
           |||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||
Sbjct: 621 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 562

                                                                       
Query: 290 ncccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 349
            ||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 561 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 502

                          
Query: 350 acctccctcgctgag 364
            || |||||||||||
Sbjct: 501 gccaccctcgctgag 487



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 309 cccacgaacagctcgttcgacttggtgaacccga 342
           ||||||||||||||||||  ||||||||||||||
Sbjct: 233 cccacgaacagctcgttctccttggtgaacccga 200

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  280 bits (141), Expect = 3e-72
 Identities = 225/255 (88%)
 Strand = Plus / Minus

                                                                            
Query: 110      gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 169
                ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 35373095 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 35373036

                                                                            
Query: 170      naagacgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgat 229
                 |||| ||  ||| |||| | |||||||||||||| | ||||||| || |||||||||||
Sbjct: 35373035 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 35372976

                                                                            
Query: 230      gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 289
                |||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||
Sbjct: 35372975 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 35372916

                                                                            
Query: 290      ncccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 349
                 ||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 35372915 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 35372856

                               
Query: 350      acctccctcgctgag 364
                 || |||||||||||
Sbjct: 35372855 gccaccctcgctgag 35372841



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 309      cccacgaacagctcgttcgacttggtgaacccga 342
                ||||||||||||||||||  ||||||||||||||
Sbjct: 35372587 cccacgaacagctcgttctccttggtgaacccga 35372554

to top

>dbj|AK071638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101I15, full
           insert sequence
          Length = 1116

 Score =  280 bits (141), Expect = 3e-72
 Identities = 225/255 (88%)
 Strand = Plus / Minus

                                                                       
Query: 110 gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 169
           ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 905 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 846

                                                                       
Query: 170 naagacgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgat 229
            |||| ||  ||| |||| | |||||||||||||| | ||||||| || |||||||||||
Sbjct: 845 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 786

                                                                       
Query: 230 gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 289
           |||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||
Sbjct: 785 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 726

                                                                       
Query: 290 ncccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 349
            ||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 725 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 666

                          
Query: 350 acctccctcgctgag 364
            || |||||||||||
Sbjct: 665 gccaccctcgctgag 651



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 309 cccacgaacagctcgttcgacttggtgaacccga 342
           ||||||||||||||||||  ||||||||||||||
Sbjct: 397 cccacgaacagctcgttctccttggtgaacccga 364

to top

>emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete
            sequence
          Length = 32686

 Score =  280 bits (141), Expect = 3e-72
 Identities = 225/255 (88%)
 Strand = Plus / Minus

                                                                        
Query: 110  gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 169
            ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 4925 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 4866

                                                                        
Query: 170  naagacgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgat 229
             |||| ||  ||| |||| | |||||||||||||| | ||||||| || |||||||||||
Sbjct: 4865 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 4806

                                                                        
Query: 230  gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 289
            |||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||
Sbjct: 4805 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 4746

                                                                        
Query: 290  ncccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 349
             ||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 4745 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 4686

                           
Query: 350  acctccctcgctgag 364
             || |||||||||||
Sbjct: 4685 gccaccctcgctgag 4671



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 309  cccacgaacagctcgttcgacttggtgaacccga 342
            ||||||||||| ||||||  ||||||||||||||
Sbjct: 4417 cccacgaacagttcgttctccttggtgaacccga 4384

to top

>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
              complete sequence
          Length = 173770

 Score =  280 bits (141), Expect = 3e-72
 Identities = 225/255 (88%)
 Strand = Plus / Minus

                                                                          
Query: 110    gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 169
              ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 168939 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 168880

                                                                          
Query: 170    naagacgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgat 229
               |||| ||  ||| |||| | |||||||||||||| | ||||||| || |||||||||||
Sbjct: 168879 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 168820

                                                                          
Query: 230    gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 289
              |||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||
Sbjct: 168819 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 168760

                                                                          
Query: 290    ncccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 349
               ||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 168759 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 168700

                             
Query: 350    acctccctcgctgag 364
               || |||||||||||
Sbjct: 168699 gccaccctcgctgag 168685



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                
Query: 309    cccacgaacagctcgttcgacttggtgaacccga 342
              ||||||||||||||||||  ||||||||||||||
Sbjct: 168431 cccacgaacagctcgttctccttggtgaacccga 168398

to top

>dbj|D84392.1| Oryza sativa (japonica cultivar-group) PSII-S mRNA for 22 kDa
           protein of photosystem II precursor, complete cds
          Length = 1108

 Score =  264 bits (133), Expect = 2e-67
 Identities = 223/255 (87%)
 Strand = Plus / Minus

                                                                       
Query: 110 gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 169
           ||||||||  ||| || ||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 889 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 830

                                                                       
Query: 170 naagacgacnttgnagagcacgagcggctcgatctngctgatgggcaccccggtctcgat 229
            |||| ||  ||| |||| | |||||||||||||| | ||||||| || |||||||||||
Sbjct: 829 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 770

                                                                       
Query: 230 gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 289
           |||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||
Sbjct: 769 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 710

                                                                       
Query: 290 ncccagctgcgccagccgncccacgaacagctcgttcgacttggtgaacccgaacagcgg 349
            ||||  ||||| || || |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 709 ccccacgtgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 650

                          
Query: 350 acctccctcgctgag 364
            || |||||||||||
Sbjct: 649 gccaccctcgctgag 635



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 309 cccacgaacagctcgttcgacttggtgaacccga 342
           ||||||||||||||||||  ||||||||||||||
Sbjct: 381 cccacgaacagctcgttctccttggtgaacccga 348

to top

>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0415A04
          Length = 160669

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                         
Query: 191   gagcggctcgatctngctgatgggcaccccggtctcgatgttgagctgcgccagcgcgcc 250
             ||||||||||||||  |||||||| |  |||||||| |||||||||||| |||| |||||
Sbjct: 60393 gagcggctcgatctaactgatggggatgccggtctcaatgttgagctgccccagggcgcc 60334

                        
Query: 251   cttgcccgtga 261
             |||||| ||||
Sbjct: 60333 cttgccggtga 60323

to top

>gb|DQ067929.1| Xerophyta humilis PSII subunit PsbS mRNA, partial cds; chloroplast
          Length = 479

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 106/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 195 ggctcgatctngctgatgggcaccccggtctcgatgttgagctgcgccagcgcgcccttg 254
           |||||||| | |||||||||||| || ||||||||||| | ||| ||||  || ||||| 
Sbjct: 437 ggctcgatgtcgctgatgggcacgcctgtctcgatgtttaactgagccaaagcacccttc 378

                                                                       
Query: 255 cccgtgatgatctccccgatgatggagaaggcgatncccagctgcgccagccgncccacg 314
           || ||||||| ||| |||||||  ||||| || || || || ||||| || || ||||||
Sbjct: 377 ccggtgatgacctctccgatgagtgagaacgcaataccgagttgcgctagtcgtcccacg 318

                      
Query: 315 aacagctcgtt 325
           || ||||||||
Sbjct: 317 aagagctcgtt 307

to top

>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02,
              complete sequence
          Length = 156649

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                          
Query: 221    ggtctcgatgttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatgga 280
              ||||||||||||||||||||  || ||  ||||||| |||| |||||| | |||||||||
Sbjct: 154554 ggtctcgatgttgagctgcgtgagggcaaccttgccggtgacgatctcgctgatgatgga 154495

                       
Query: 281    gaaggcgat 289
              |||||||||
Sbjct: 154494 gaaggcgat 154486

to top

>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
             complete sequence
          Length = 145070

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                         
Query: 221   ggtctcgatgttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatgga 280
             ||||||||||||||||||||  || ||  ||||||| |||| |||||| | |||||||||
Sbjct: 13430 ggtctcgatgttgagctgcgtgagggcaaccttgccggtgacgatctcgctgatgatgga 13371

                      
Query: 281   gaaggcgat 289
             |||||||||
Sbjct: 13370 gaaggcgat 13362

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                           
Query: 221     ggtctcgatgttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatgga 280
               ||||||||||||||||||||  || ||  ||||||| |||| |||||| | |||||||||
Sbjct: 4644087 ggtctcgatgttgagctgcgtgagggcaaccttgccggtgacgatctcgctgatgatgga 4644028

                        
Query: 281     gaaggcgat 289
               |||||||||
Sbjct: 4644027 gaaggcgat 4644019

to top

>ref|NM_190839.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1878

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 219  ccggtctcgatgttgagctgcgccagcgcgcccttgcccgtga 261
            |||||||| |||||||||||| |||| ||||||||||| ||||
Sbjct: 1211 ccggtctcaatgttgagctgccccagggcgcccttgccggtga 1169

to top

>gb|AY836649.1| Uncultured bacterium clone BD8802 pectate lyase gene, complete cds
          Length = 1101

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 234 agctgcgccagcgcgcccttgccc 257
           ||||||||||||||||||||||||
Sbjct: 497 agctgcgccagcgcgcccttgccc 474

to top

>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 284    ggcgatncccagctgcgccagccg 307
              |||||| |||||||||||||||||
Sbjct: 415584 ggcgatgcccagctgcgccagccg 415607

to top

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 139     cggtgccggggttgatggcggcgatgaag 167
               |||||||| |||||||||||||| |||||
Sbjct: 2855847 cggtgccgcggttgatggcggcggtgaag 2855819

to top

>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 232     tgagctgcgccagcgcgccct 252
               |||||||||||||||||||||
Sbjct: 3776927 tgagctgcgccagcgcgccct 3776907

to top

>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0692C11
          Length = 169562

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 38    acaaacaggcaaagcacgtacgtac 62
             |||||| ||||||||||||||||||
Sbjct: 35805 acaaaccggcaaagcacgtacgtac 35781

to top

>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0684B02
          Length = 132470

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 38     acaaacaggcaaagcacgtacgtac 62
              |||||| ||||||||||||||||||
Sbjct: 102729 acaaaccggcaaagcacgtacgtac 102705

to top

>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete
             sequence
          Length = 906719

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   cgagggctgagcggaagcct 386
             ||||||||||||||||||||
Sbjct: 81539 cgagggctgagcggaagcct 81558

to top

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 225     tcgatgttgagctgcgccag 244
               ||||||||||||||||||||
Sbjct: 5121238 tcgatgttgagctgcgccag 5121219

to top

>gb|AY772449.1| Rhodococcus equi strain 103+ heat shock protein (htrA) gene, complete
            cds
          Length = 1680

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  tgccggggttgatggcggcg 161
            ||||||||||||||||||||
Sbjct: 1151 tgccggggttgatggcggcg 1132

to top

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     tgccggggttgatggcggcg 161
               ||||||||||||||||||||
Sbjct: 5243720 tgccggggttgatggcggcg 5243739



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     tgccggggttgatggcggcg 161
               ||||||||||||||||||||
Sbjct: 1734161 tgccggggttgatggcggcg 1734180

to top

>ref|XM_567952.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNL03940) partial mRNA
          Length = 1444

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 cgagggctgagcggaagcct 386
           ||||||||||||||||||||
Sbjct: 127 cgagggctgagcggaagcct 108

to top

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 121    cgccgctgatgaacttgccggtgc 144
              |||||||| |||||||||||||||
Sbjct: 402332 cgccgctggtgaacttgccggtgc 402355

to top

>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 134    cttgccggtgccggggttgatggcggcg 161
              |||||||||| |||||||||||| ||||
Sbjct: 122050 cttgccggtggcggggttgatggaggcg 122077

to top

>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 142     tgccggggttgatggcggcg 161
               ||||||||||||||||||||
Sbjct: 4044198 tgccggggttgatggcggcg 4044179

to top

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     tgccggggttgatggcggcg 161
               ||||||||||||||||||||
Sbjct: 3453230 tgccggggttgatggcggcg 3453249

to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     tgccggggttgatggcggcg 161
               ||||||||||||||||||||
Sbjct: 2030031 tgccggggttgatggcggcg 2030050

to top

>gb|AF163841.3|AF163841 Myxococcus xanthus 4-oxalocrotonate decarboxylase-like protein,
             cysteine dioxygenase-like protein, putative histidine
             protein kinase (hpkA), putative serine/threonine protein
             kinase (pknD1), putative histidine protein kinase (espA),
             putative membrane protein (espB), putative
             serine/threonine protein kinase (pknD2), putative serine
             protease DO-like precursor (htrA), and putative response
             regulator genes, complete cds; and unknown genes
          Length = 18424

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   tgccggggttgatggcggcg 161
             ||||||||||||||||||||
Sbjct: 16398 tgccggggttgatggcggcg 16417

to top

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     tgccggggttgatggcggcg 161
               ||||||||||||||||||||
Sbjct: 1258181 tgccggggttgatggcggcg 1258200

to top

>emb|AJ519722.2|YEN519722 Yersinia enterocolitica partial cryptic plasmid p29930
          Length = 40303

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   tgccggggttgatggcggcg 161
             ||||||||||||||||||||
Sbjct: 37562 tgccggggttgatggcggcg 37581

to top

>emb|AJ347753.1|BCE347753 Burkholderia cepacia bcrA gene for multidrug efflux protein
          Length = 1657

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gagctgcgccagcgcgccct 252
            ||||||||||||||||||||
Sbjct: 1483 gagctgcgccagcgcgccct 1464

to top

>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     gcgcgtgccggtgccgatct 108
              ||||||||||||||||||||
Sbjct: 452195 gcgcgtgccggtgccgatct 452176

to top

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    tgccggggttgatggcggcg 161
              ||||||||||||||||||||
Sbjct: 935443 tgccggggttgatggcggcg 935462

to top

>gb|L02354.1|PDENQOURF Paracoccus denitrificans NADH dehydrogenase (URF4), (NQO8), (NQO9),
            (URF5), (URF6), (NQO10), (NQO11), (NQO12), (NQO13), and
            (NQO14) genes, complete cds's; biotin [acetyl-CoA
            carboxyl] ligase (birA) gene, complete cds
          Length = 10425

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 279  gagaaggcgatncccagctgcgccagc 305
            ||||||||||| ||||| |||||||||
Sbjct: 3669 gagaaggcgatgcccagttgcgccagc 3643


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,994,286
Number of Sequences: 3902068
Number of extensions: 1994286
Number of successful extensions: 53756
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52833
Number of HSP's gapped (non-prelim): 923
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result