ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah62p02 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 175 bits (444), Expect(2) = 1e-64 Identities = 85/96 (88%), Positives = 89/96 (92%) Frame = -1 Query: 460 LNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMS 281 LNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD A IN+DLISNF S Sbjct: 495 LNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFS 554 Query: 280 DPVHGAIEVCAELRPTVDISVTADADFVRPELRQSA 173 DPVHGAIEVCA+LRPTVDISV ADADFVRPELRQS+ Sbjct: 555 DPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSS 590 Score = 90.9 bits (224), Expect(2) = 1e-64 Identities = 46/51 (90%), Positives = 49/51 (96%), Gaps = 1/51 (1%) Frame = -3 Query: 593 LGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLEP-VHA 444 LGPL+PFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIESVDSL P +HA Sbjct: 451 LGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHA 501
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 174 bits (441), Expect(2) = 1e-63 Identities = 84/94 (89%), Positives = 88/94 (93%) Frame = -1 Query: 460 LNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMS 281 LNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD APINQDLISNF+S Sbjct: 485 LNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVS 544 Query: 280 DPVHGAIEVCAELRPTVDISVTADADFVRPELRQ 179 DPVHGAI+VCAELRPT+DISV A ADFVRPELRQ Sbjct: 545 DPVHGAIQVCAELRPTLDISVPAAADFVRPELRQ 578 Score = 89.0 bits (219), Expect(2) = 1e-63 Identities = 45/51 (88%), Positives = 49/51 (96%), Gaps = 1/51 (1%) Frame = -3 Query: 593 LGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLEP-VHA 444 LGPL+PFTAGV+VA+MMAQIEVLRKKGHSYSEIINESVIESVDSL P +HA Sbjct: 441 LGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHA 491
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 172 bits (437), Expect(2) = 2e-63 Identities = 83/95 (87%), Positives = 89/95 (93%) Frame = -1 Query: 460 LNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMS 281 LNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYIL+QQA V VD APINQDLISNF+S Sbjct: 501 LNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLS 560 Query: 280 DPVHGAIEVCAELRPTVDISVTADADFVRPELRQS 176 DPVH AI VCA+LRP+VDISVTADADFVRPELRQ+ Sbjct: 561 DPVHEAIGVCAQLRPSVDISVTADADFVRPELRQA 595 Score = 89.7 bits (221), Expect(2) = 2e-63 Identities = 45/51 (88%), Positives = 49/51 (96%), Gaps = 1/51 (1%) Frame = -3 Query: 593 LGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLEP-VHA 444 LGPL+PFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIE+VDSL P +HA Sbjct: 457 LGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHA 507
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 37.4 bits (85), Expect(2) = 2e-06 Identities = 17/34 (50%), Positives = 25/34 (73%) Frame = -3 Query: 551 LMMAQIEVLRKKGHSYSEIINESVIESVDSLEPV 450 L +AQ +VLR++GHS +E NE+V E+ SL P+ Sbjct: 277 LFLAQYQVLRERGHSPAEAFNETVEEATQSLYPL 310 Score = 33.5 bits (75), Expect(2) = 2e-06 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 460 LNPFMHARGVAFMVDNCSTTARLGSRKWAPRF 365 L P + G+ +M CSTTAR G+ W PRF Sbjct: 307 LYPLIGKYGLDYMFAACSTTARRGAIDWTPRF 338
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 37.0 bits (84), Expect(2) = 3e-06 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = -3 Query: 551 LMMAQIEVLRKKGHSYSEIINESVIESVDSLEPV 450 + +AQ +VLR+ GHS SE NE+V E+ SL P+ Sbjct: 270 MFLAQYDVLRENGHSPSEAFNETVEEATQSLYPL 303 Score = 33.1 bits (74), Expect(2) = 3e-06 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 460 LNPFMHARGVAFMVDNCSTTARLGSRKWAPRF 365 L P + G+ +M D CSTTAR G+ W P F Sbjct: 300 LYPLIGKYGMDYMYDACSTTARRGALDWYPIF 331
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%) Frame = -3 Query: 551 LMMAQIEVLRKKGHSYSEIINESVIESVDSLEPV---HACAW 435 + +AQ EVLR++GHS SE NE+V E+ SL P+ H W Sbjct: 276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDW 317 Score = 37.4 bits (85), Expect = 0.033 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = -1 Query: 460 LNPFMHARGVAFMVDNCSTTARLGSRKWAPRF 365 L P + A G+ +M D CSTTAR G+ W P+F Sbjct: 306 LYPLIGAHGMDWMFDACSTTARRGAIDWTPKF 337
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +2 Query: 215 RHRDVDGGPQLGADLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 367 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV+E Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDVLE 416
>SEH1L_HUMAN (Q96EE3) Nucleoporin SEH1-like (SEC13-like protein)| Length = 421 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -2 Query: 138 WTI-HGL*CMRATSCLNL*AAVSGRESPLLGVGSSESSP 25 W++ H + C + SC++ + S SP++ VGS +SSP Sbjct: 153 WSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191
>ICAA_STAAW (Q8NUI7) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 367 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 260 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAU (Q9RQP9) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 367 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 260 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAS (Q6G608) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 367 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 260 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAR (Q6GDD8) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 367 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 260 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAN (Q7A351) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 367 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 260 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAM (Q99QX3) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 367 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 260 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAC (Q5HCN1) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 367 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 260 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>FIT3_YEAST (Q08907) Facilitator of iron transport 3 precursor| Length = 204 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/74 (22%), Positives = 38/74 (51%) Frame = +3 Query: 114 YITVHELSTHQKTTLQTRI*ADCRSSGRTKSASAVTEMSTVGLSSAQTSMAPWTGSDMKL 293 ++ E S++ + T ++ +S + +A+ E S+ SS+ ++ +TG+ + Sbjct: 128 FVWTGEGSSNTWSPSSTSTSSEAATSSASTTATTTAETSSSATSSSTAELSSYTGAADAI 187 Query: 294 LMRSWLMGASLSTV 335 + LMGA+L+ V Sbjct: 188 TAGTGLMGAALAAV 201
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +2 Query: 137 HPSKNNSSDPNLGRLPELRAHEVSIGRHRDVDGGP 241 HP+ + SDP L R P L H + G D GP Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,538,989 Number of Sequences: 219361 Number of extensions: 1508449 Number of successful extensions: 4739 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4591 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4738 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
