ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63e06 |
|---|---|
| Clone Library Name | barley_pub |
>UUP_ECOLI (P43672) ABC transporter ATP-binding protein uup| Length = 635 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = +2 Query: 137 DFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAP 238 DFLFHP+ TP A +GG E RLL +F P Sbjct: 426 DFLFHPKRAMTPVRALSGG-ERNRLLLARLFLKP 458
>PLMN_MACEU (O18783) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 806 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/71 (29%), Positives = 29/71 (40%) Frame = +2 Query: 110 KKKFTCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLY 289 K TC R++ + +TP + P GL+ NP P CY P V + Y Sbjct: 291 KSGHTCQRWNKQTPHKHNRTPENFPCRGLDENYCRNPDGELEPW----CYTTNPDVRQEY 346 Query: 290 TQRKSCKTAHP 322 SC T+ P Sbjct: 347 CAIPSCGTSSP 357
>ENV2_MOUSE (P11370) Retrovirus-related Env polyprotein from Fv-4 locus| Length = 679 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Frame = +3 Query: 246 WMCVTTKPPGFSGFTLSARVVKQH---THASPSASHKSNLTSQLSEAVCKITSLSTH 407 W+C+ ++PP + G + K T+ S A HK L+ + C TH Sbjct: 346 WLCLVSEPPYYEGVAVLGDYTKHETAPTNCSSRAQHKLTLSEVTGQGKCLGAVPKTH 402
>MATMC_SCHPO (P10840) Mating-type M-specific polypeptide Mc (mat-Mc)| Length = 181 Score = 30.0 bits (66), Expect = 4.6 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 7/100 (7%) Frame = +3 Query: 141 SYFIXXXXXXXPMRRPAV*SLDDCSTPGYSLRHVLWMCVTT----KPPGFSGFTLSARVV 308 SY + P +P +LD C PGY L+ + +T +PP + F L Sbjct: 60 SYLLDGNSAQLPRPQPISFTLDQCKVPGYILKSLRKDTTSTERTPRPP--NAFIL----Y 113 Query: 309 KQHTHASPSASHKSNLTSQLSEAVCKI---TSLSTHDRYF 419 ++ HA+ S+ S SQ+S+ V ++ S RYF Sbjct: 114 RKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYF 153
>ENV_FLVC6 (P21443) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 668 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = +3 Query: 246 WMCVTTKPPGFSGFTLSARVVKQHTHASPSA----SHKSNLTSQLSEAVCKITSLSTH 407 W+C+ ++PP + G + Q T+ PS HK ++ + +C T TH Sbjct: 333 WLCLVSRPPYYEGIAVLGNYSNQ-TNPPPSCLSVPQHKLTISEVSGQGLCIATVPKTH 389
>PSPB_HUMAN (P07988) Pulmonary surfactant-associated protein B precursor (SP-B)| (6 kDa protein) (Pulmonary surfactant-associated proteolipid SPL(Phe)) (18 kDa pulmonary-surfactant protein) Length = 381 Score = 30.0 bits (66), Expect = 4.6 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 544 VIDYFKNITDANGVIIH 494 VIDYF+N TD+NG+ +H Sbjct: 123 VIDYFQNQTDSNGICMH 139
>ENV_MLVCB (P08360) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP70; Spike protein p15E; R protein] Length = 661 Score = 29.6 bits (65), Expect = 6.1 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Frame = +3 Query: 246 WMCVTTKPPGFSGFTLSARVVKQHT---HASPSASHKSNLTSQLSEAVCKITSLSTH 407 W+C+ ++PP + G + T + S + HK L+ + C T TH Sbjct: 333 WLCLVSEPPYYEGVAVLREYTSHETAPANCSSGSQHKLTLSEVTGQGRCLGTVPKTH 389
>VGLM_NYV (Q83887) Envelope polyprotein precursor [Contains: Glycoprotein 1| (G1); Glycoprotein 2 (G2)] Length = 1140 Score = 29.6 bits (65), Expect = 6.1 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 248 DVCYHETPGVFRLYTQRKSCKTAHPRITFCLPQVESHEPTVRS 376 DVC+HE L T +KSC + +C+ ES E +++ Sbjct: 550 DVCHHECETAKELETHKKSCPEG--QCPYCMTMTESTESALQA 590
>APOA_HUMAN (P08519) Apolipoprotein(a) precursor (EC 3.4.21.-) (Apo(a)) (Lp(a))| Length = 4548 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 3240 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 3295 Query: 302 SCKTA 316 C A Sbjct: 3296 QCSDA 3300 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 3126 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 3181 Query: 302 SCKTA 316 C A Sbjct: 3182 QCSDA 3186 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 3012 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 3067 Query: 302 SCKTA 316 C A Sbjct: 3068 QCSDA 3072 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 2898 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 2953 Query: 302 SCKTA 316 C A Sbjct: 2954 QCSDA 2958 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 2784 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 2839 Query: 302 SCKTA 316 C A Sbjct: 2840 QCSDA 2844 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 2670 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 2725 Query: 302 SCKTA 316 C A Sbjct: 2726 QCSDA 2730 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 2556 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 2611 Query: 302 SCKTA 316 C A Sbjct: 2612 QCSDA 2616 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 2442 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 2497 Query: 302 SCKTA 316 C A Sbjct: 2498 QCSDA 2502 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 2328 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 2383 Query: 302 SCKTA 316 C A Sbjct: 2384 QCSDA 2388 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 2214 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 2269 Query: 302 SCKTA 316 C A Sbjct: 2270 QCSDA 2274 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 2100 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 2155 Query: 302 SCKTA 316 C A Sbjct: 2156 QCSDA 2160 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 1986 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 2041 Query: 302 SCKTA 316 C A Sbjct: 2042 QCSDA 2046 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 1872 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 1927 Query: 302 SCKTA 316 C A Sbjct: 1928 QCSDA 1932 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 1758 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 1813 Query: 302 SCKTA 316 C A Sbjct: 1814 QCSDA 1818 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 1644 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 1699 Query: 302 SCKTA 316 C A Sbjct: 1700 QCSDA 1704 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 1530 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 1585 Query: 302 SCKTA 316 C A Sbjct: 1586 QCSDA 1590 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 1416 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 1471 Query: 302 SCKTA 316 C A Sbjct: 1472 QCSDA 1476 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 1302 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 1357 Query: 302 SCKTA 316 C A Sbjct: 1358 QCSDA 1362 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 1188 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 1243 Query: 302 SCKTA 316 C A Sbjct: 1244 QCSDA 1248 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 1074 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 1129 Query: 302 SCKTA 316 C A Sbjct: 1130 QCSDA 1134 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 960 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 1015 Query: 302 SCKTA 316 C A Sbjct: 1016 QCSDA 1020 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 846 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 901 Query: 302 SCKTA 316 C A Sbjct: 902 QCSDA 906 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 732 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 787 Query: 302 SCKTA 316 C A Sbjct: 788 QCSDA 792 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 618 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 673 Query: 302 SCKTA 316 C A Sbjct: 674 QCSDA 678 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 504 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 559 Query: 302 SCKTA 316 C A Sbjct: 560 QCSDA 564 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 390 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 445 Query: 302 SCKTA 316 C A Sbjct: 446 QCSDA 450 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 276 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 331 Query: 302 SCKTA 316 C A Sbjct: 332 QCSDA 336 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/65 (29%), Positives = 23/65 (35%) Frame = +2 Query: 122 TCFRYDFLFHPQEEKTPPHAPAGGLEFGRLLNPGIFFAPCLVDVCYHETPGVFRLYTQRK 301 TC + + +TP + P GL NP AP CY PGV Y Sbjct: 162 TCQAWSSMTPHSHSRTPEYYPNAGLIMNYCRNPDAVAAP----YCYTRDPGVRWEYCNLT 217 Query: 302 SCKTA 316 C A Sbjct: 218 QCSDA 222
>ENV_RMCFV (P06445) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP70; Coat protein p12E; Spike protein p15E] Length = 640 Score = 29.6 bits (65), Expect = 6.1 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = +3 Query: 246 WMCVTTKPPGFSGFTLSARVVKQHTHA----SPSASHKSNLTSQLSEAVCKITSLSTH 407 W+C+ +PP + G + HT A S ++ HK L+ + +C T TH Sbjct: 311 WLCLVAEPPYYEGVAVLG-TYSNHTSAPTNCSVASQHKLTLSEVTGQGLCIGTVPKTH 367
>MATMC_SCHKA (Q6WRX6) Mating-type M-specific polypeptide Mc (mat-Mc)| Length = 181 Score = 29.3 bits (64), Expect = 7.9 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 7/100 (7%) Frame = +3 Query: 141 SYFIXXXXXXXPMRRPAV*SLDDCSTPGYSLRHVLWMCVTT----KPPGFSGFTLSARVV 308 SY + P +P +LD C PGY L+ + +T +PP + F L Sbjct: 60 SYLLDGNSAQLPRPQPISFTLDQCKVPGYILKSLRKDTKSTERTPRPP--NAFIL----Y 113 Query: 309 KQHTHASPSASHKSNLTSQLSEAVCKI---TSLSTHDRYF 419 ++ HA+ S+ S SQ+S+ V ++ S RYF Sbjct: 114 RKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYF 153
>ERCC3_DROME (Q02870) DNA excision repair protein haywire (EC 3.6.1.-)| (ATP-dependent DNA helicase hay) (ERCC-3 homolog protein) Length = 798 Score = 29.3 bits (64), Expect = 7.9 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 8/110 (7%) Frame = -1 Query: 532 FKNITDANGVIIHPSGVELSIHSSIDELASCYGDKQGKKYRSWVDRLVILQT--ASDSWL 359 F N +GVI+ P G S+ + A C K+ LV+ + + + W Sbjct: 344 FGNGRARSGVIVLPCGAGKSL---VGVTACCTVRKRA---------LVLCNSGVSVEQWK 391 Query: 358 VRFDLWEAEGDAWVCCFTTLALSVKPENPGGFV-----VTHIHK-TWRKE 227 +F +W D+ +C FT+ A KP G V +TH K +W E Sbjct: 392 QQFKMWSTADDSMICRFTSEAKD-KPMGCGILVTTYSMITHTQKRSWEAE 440
>ENV_FSVGA (P03391) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 662 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = +3 Query: 246 WMCVTTKPPGFSGFTLSARVVKQHTHASPSA----SHKSNLTSQLSEAVCKITSLSTH 407 W+C+ ++PP + G + Q T+ PS HK ++ + +C T TH Sbjct: 333 WLCLVSRPPYYEGIAILGNYSNQ-TNPPPSCLSIPQHKLTISEVSGQGLCIGTVPKTH 389
>USP9X_HUMAN (Q93008) Probable ubiquitin carboxyl-terminal hydrolase FAF-X (EC| 3.1.2.15) (Ubiquitin thioesterase FAF-X) (Ubiquitin specific-processing protease FAF-X) (Deubiquitinating enzyme FAF-X) (Fat facets protein related, X-linked) (Ubiquitin-specif Length = 2547 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/66 (25%), Positives = 33/66 (50%) Frame = -1 Query: 553 ADSVIDYFKNITDANGVIIHPSGVELSIHSSIDELASCYGDKQGKKYRSWVDRLVILQTA 374 A V++ N+ ++ V + + LS H I + SC D+ +K + W+DR + Sbjct: 497 AHKVLNLLWNLAHSDDVPVDIMDLALSAHIKILDY-SCSQDRDTQKIQ-WIDRFIEELRT 554 Query: 373 SDSWLV 356 +D W++ Sbjct: 555 NDKWVI 560
>VP19_HCMVA (P16783) Probable capsid assembly and DNA maturation protein| (Capsid protein VP19C) Length = 290 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 106 SKKEIHMLSVRFLISSSRRKNSSPCAGRRSRVWTTAQPRDILCAMSCGCVLPRN 267 +K+E++ +SVR+L + + ++ V AQP +L M GC PR+ Sbjct: 26 AKREVNTISVRYLYHADHQALTARFFVPEGLVEFEAQPGALLIRMETGCDSPRH 79
>ENV_MLVFP (P26803) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 676 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Frame = +3 Query: 246 WMCVTTKPPGFSGFTLSARVVKQHTHA----SPSASHKSNLTSQLSEAVCKITSLSTH 407 W+C+ + PP + G + HT A S + HK L+ + +C T TH Sbjct: 347 WLCLVSAPPYYEGVAVLG-TYSNHTSAPANCSAGSQHKLTLSEVTGQGLCIGTVPKTH 403
>ENV_FLVCA (Q02076) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 410 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = +3 Query: 246 WMCVTTKPPGFSGFTLSARVVKQHTHASPSA----SHKSNLTSQLSEAVCKITSLSTH 407 W+C+ ++PP + G + Q T+ PS HK ++ + +C T TH Sbjct: 273 WLCLVSRPPYYEGIAILGNYSNQ-TNPPPSCLSIPQHKLTISEVSGQGLCIGTVPKTH 329
>USP9X_MOUSE (P70398) Probable ubiquitin carboxyl-terminal hydrolase FAF-X (EC| 3.1.2.15) (Ubiquitin thioesterase FAF-X) (Ubiquitin-specific-processing protease FAF-X) (Deubiquitinating enzyme FAF-X) (Fat facets protein-related, X-linked) (Ubiquitin-specif Length = 2559 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/66 (25%), Positives = 33/66 (50%) Frame = -1 Query: 553 ADSVIDYFKNITDANGVIIHPSGVELSIHSSIDELASCYGDKQGKKYRSWVDRLVILQTA 374 A V++ N+ ++ V + + LS H I + SC D+ +K + W+DR + Sbjct: 504 AHKVLNLLWNLAHSDDVPVDIMDLALSAHIKILDY-SCSQDRDTQKIQ-WIDRFIEELRT 561 Query: 373 SDSWLV 356 +D W++ Sbjct: 562 NDKWVI 567
>ENV_FLVCS (Q02077) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 436 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = +3 Query: 246 WMCVTTKPPGFSGFTLSARVVKQHTHASPSA----SHKSNLTSQLSEAVCKITSLSTH 407 W+C+ ++PP + G + Q T+ PS HK ++ + +C T TH Sbjct: 283 WLCLVSRPPYYEGIAILGNYSNQ-TNPPPSCLSTPQHKLTISEVSGQGLCIGTVPKTH 339
>ENV_FLVGL (P08359) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 642 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = +3 Query: 246 WMCVTTKPPGFSGFTLSARVVKQHTHASPSA----SHKSNLTSQLSEAVCKITSLSTH 407 W+C+ ++PP + G + Q T+ PS HK ++ + +C T TH Sbjct: 313 WLCLVSRPPYYEGIAILGNYSNQ-TNPPPSCLSTPQHKLTISEVSGQGMCIGTVPKTH 369
>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1006 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -2 Query: 276 TPGVSW*HTSTRHGAKNIPGLSSRPNSRPPAGA 178 +PG S H S G PGL+ RP+SR GA Sbjct: 877 SPGKSKRHRSRSPGLARFPGLALRPSSRERRGA 909 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,189,805 Number of Sequences: 219361 Number of extensions: 1911677 Number of successful extensions: 5110 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4814 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5098 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
