ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63e05 |
|---|---|
| Clone Library Name | barley_pub |
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 88.2 bits (217), Expect = 5e-18 Identities = 46/67 (68%), Positives = 50/67 (74%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIXPXXXXXXXXXXXXXXNPGTGKF 164 GRLAQLGIAFSIIGEIITGKGALAQLN ETGVPI+EI P NPGTGKF Sbjct: 210 GRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKF 269 Query: 163 ISGEDDD 143 I+ E++D Sbjct: 270 ITDEEED 276 Score = 55.5 bits (132), Expect = 3e-08 Identities = 25/39 (64%), Positives = 31/39 (79%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIXP 227 GR+A +G A S++GE ITGKG LAQLN+ETG+PI E P Sbjct: 104 GRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEP 142
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 88.2 bits (217), Expect = 5e-18 Identities = 46/67 (68%), Positives = 50/67 (74%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIXPXXXXXXXXXXXXXXNPGTGKF 164 GRLAQLGIAFSIIGEIITGKGALAQLN ETGVPI+EI P NPGTGKF Sbjct: 210 GRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKF 269 Query: 163 ISGEDDD 143 I+ E++D Sbjct: 270 ITDEEED 276 Score = 55.5 bits (132), Expect = 3e-08 Identities = 25/39 (64%), Positives = 31/39 (79%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIXP 227 GR+A +G A S++GE ITGKG LAQLN+ETG+PI E P Sbjct: 104 GRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEP 142
>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 85.9 bits (211), Expect = 2e-17 Identities = 44/67 (65%), Positives = 50/67 (74%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIXPXXXXXXXXXXXXXXNPGTGKF 164 GRLAQLGIAFSIIGEIITGKGALAQLN ETGVPI+EI P NPGTGKF Sbjct: 208 GRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKF 267 Query: 163 ISGEDDD 143 ++ E+++ Sbjct: 268 VTDEEEE 274 Score = 55.5 bits (132), Expect = 3e-08 Identities = 25/39 (64%), Positives = 31/39 (79%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIXP 227 GR+A +G A S++GE ITGKG LAQLN+ETG+PI E P Sbjct: 102 GRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEP 140
>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 84.3 bits (207), Expect = 7e-17 Identities = 43/67 (64%), Positives = 50/67 (74%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIXPXXXXXXXXXXXXXXNPGTGKF 164 GRLAQLG AFS+IGEIITGKGALAQLNIETGVPI+EI P NPGTGKF Sbjct: 207 GRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKF 266 Query: 163 ISGEDDD 143 I+ ++++ Sbjct: 267 ITDDEEE 273 Score = 53.1 bits (126), Expect = 2e-07 Identities = 24/39 (61%), Positives = 31/39 (79%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIXP 227 GR+A +G A S++GE ITGKG L+QLN+ETG+PI E P Sbjct: 103 GRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEP 141
>PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 265 Score = 81.3 bits (199), Expect = 6e-16 Identities = 41/67 (61%), Positives = 48/67 (71%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIXPXXXXXXXXXXXXXXNPGTGKF 164 GRLAQLGIAFS+IGEIITGKGALAQLNIETG+PI +I P NPG GKF Sbjct: 198 GRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKF 257 Query: 163 ISGEDDD 143 I+ + ++ Sbjct: 258 ITDDGEE 264 Score = 54.7 bits (130), Expect = 6e-08 Identities = 24/39 (61%), Positives = 31/39 (79%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIXP 227 GR+A +G A S++GE +TGKG LAQLN+ETG+PI E P Sbjct: 94 GRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEP 132
>ARNT2_HUMAN (Q9HBZ2) Aryl hydrocarbon receptor nuclear translocator 2 (ARNT| protein 2) Length = 706 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 181 PGTGKFISGEDDD*IGTGTRECFLAINCTYVRALPVC 71 P G I ED D +G G++ C +AI V + PVC Sbjct: 279 PPAGMTIPEEDAD-VGQGSKYCLVAIGRLQVTSSPVC 314
>ARNT2_MOUSE (Q61324) Aryl hydrocarbon receptor nuclear translocator 2 (ARNT| protein 2) Length = 712 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 181 PGTGKFISGEDDD*IGTGTRECFLAINCTYVRALPVC 71 P G I ED D +G G++ C +AI V + PVC Sbjct: 290 PPAGMTIPEEDAD-VGQGSKYCLVAIGRLQVTSSPVC 325
>NUOC_MYCTU (P65571) NADH-quinone oxidoreductase chain C (EC 1.6.99.5) (NADH| dehydrogenase I, chain C) (NDH-1, chain C) Length = 236 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 242 DGHPGLDVELRQRALARDDLPDDGEGDPQLRQPP 343 DGHP AL R ++PDD +G PQ + P Sbjct: 189 DGHP---------ALTRIEMPDDWQGHPQRKDYP 213
>NUOC_MYCBO (P65572) NADH-quinone oxidoreductase chain C (EC 1.6.99.5) (NADH| dehydrogenase I, chain C) (NDH-1, chain C) Length = 236 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 242 DGHPGLDVELRQRALARDDLPDDGEGDPQLRQPP 343 DGHP AL R ++PDD +G PQ + P Sbjct: 189 DGHP---------ALTRIEMPDDWQGHPQRKDYP 213
>CCNL1_RAT (Q9R1Q2) Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)| Length = 527 Score = 27.3 bits (59), Expect = 9.6 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -2 Query: 308 HRGDHHGQGRAGAAQHR 258 H+G HHG R+G +HR Sbjct: 510 HKGKHHGGSRSGHGRHR 526
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 343 GRLAQLGIAFSIIGEIITGKGALAQLNI 260 GRLA LG +++ E +TG+G L L I Sbjct: 21 GRLAMLGFIAALLTESLTGQGTLHFLGI 48
>CCNL1_MOUSE (Q52KE7) Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)| Length = 532 Score = 27.3 bits (59), Expect = 9.6 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -2 Query: 308 HRGDHHGQGRAGAAQHR 258 H+G HHG R+G +HR Sbjct: 515 HKGKHHGGSRSGHGRHR 531 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,408,747 Number of Sequences: 219361 Number of extensions: 473395 Number of successful extensions: 1744 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1705 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1743 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
