ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63e02 |
|---|---|
| Clone Library Name | barley_pub |
>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 324 Score = 206 bits (525), Expect = 3e-53 Identities = 98/98 (100%), Positives = 98/98 (100%) Frame = -2 Query: 567 RCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVS 388 RCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVS Sbjct: 227 RCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVS 286 Query: 387 LQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWEQ 274 LQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWEQ Sbjct: 287 LQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWEQ 324
>CAHC_TOBAC (P27141) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 321 Score = 125 bits (315), Expect = 6e-29 Identities = 61/95 (64%), Positives = 68/95 (71%) Frame = -2 Query: 564 CGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSL 385 CGGIK L+SL +S F+EDWV+IG PAK KVQ E F DQCT EKEAVNVSL Sbjct: 215 CGGIKGLMSLPADGSESTAFIEDWVKIGLPAKAKVQGEHVDKCFADQCTACEKEAVNVSL 274 Query: 384 QNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 280 NLLTYPFV+EG+ TL L GGHYDFV+G FE W Sbjct: 275 GNLLTYPFVREGLVKKTLALKGGHYDFVNGGFELW 309
>CAH2_ARATH (P42737) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) Length = 259 Score = 123 bits (308), Expect = 4e-28 Identities = 59/96 (61%), Positives = 69/96 (71%) Frame = -2 Query: 564 CGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSL 385 CGGIK L+S ++S F+EDWV+I PAK KV E S F+DQC E+EAVNVSL Sbjct: 153 CGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCEREAVNVSL 212 Query: 384 QNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWE 277 NLLTYPFV+EGV GTL L GG+YDFV+G FE WE Sbjct: 213 ANLLTYPFVREGVVKGTLALKGGYYDFVNGSFELWE 248
>CAHX_FLABR (P46511) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 122 bits (305), Expect = 9e-28 Identities = 57/96 (59%), Positives = 67/96 (69%) Frame = -2 Query: 567 RCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVS 388 RCGGIK L++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVS Sbjct: 223 RCGGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVS 282 Query: 387 LQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 280 L NLLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 283 LGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 318
>CAHX_FLAPR (P46281) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 329 Score = 122 bits (305), Expect = 9e-28 Identities = 57/96 (59%), Positives = 67/96 (69%) Frame = -2 Query: 567 RCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVS 388 RCGGIK L++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVS Sbjct: 222 RCGGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVS 281 Query: 387 LQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 280 L NLLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 282 LGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 317
>CAHX_FLABI (P46510) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 121 bits (303), Expect = 2e-27 Identities = 57/96 (59%), Positives = 67/96 (69%) Frame = -2 Query: 567 RCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVS 388 RCGGIK L++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVS Sbjct: 223 RCGGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVS 282 Query: 387 LQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 280 L NLLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 283 LGNLLTYPFVRDGLRNKTLALKGGHYDFVNGTFELW 318
>CAH1_FLALI (P46512) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase| 1) Length = 330 Score = 120 bits (302), Expect = 2e-27 Identities = 57/96 (59%), Positives = 66/96 (68%) Frame = -2 Query: 567 RCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVS 388 RCGGIK L++ D S F+EDWV++ PAK KV E DDQC EKEAVNVS Sbjct: 223 RCGGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVQCEKEAVNVS 282 Query: 387 LQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 280 L NLLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 283 LGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 318
>CAHC_ARATH (P27140) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 347 Score = 118 bits (295), Expect = 1e-26 Identities = 56/95 (58%), Positives = 67/95 (70%) Frame = -2 Query: 564 CGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSL 385 CGGIK L+S ++S F+EDWV+I PAK KV +E F+DQC E+EAVNVSL Sbjct: 230 CGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSL 289 Query: 384 QNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 280 NLLTYPFV+EG+ GTL L GG+YDFV G FE W Sbjct: 290 ANLLTYPFVREGLVKGTLALKGGYYDFVKGAFELW 324
>CAH2_FLALI (P46513) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) (Fragment) Length = 190 Score = 117 bits (292), Expect = 3e-26 Identities = 52/95 (54%), Positives = 66/95 (69%) Frame = -2 Query: 564 CGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSL 385 CGGIK L+S+ D + F+E WV++G PAK KV+ C ++ F D CT EKEAVNVSL Sbjct: 84 CGGIKGLMSIPDDGTPASDFIEQWVKLGLPAKSKVKANCNNLEFADLCTKCEKEAVNVSL 143 Query: 384 QNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 280 NLLTYPFV++ + N L L G HYDFV+G F+ W Sbjct: 144 GNLLTYPFVRDALVNKKLSLKGAHYDFVNGAFDLW 178
>CAHC_PEA (P17067) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) [Contains: Carbonic anhydrase, 27 kDa isoform; Carbonic anhydrase, 25 kDa isoform] Length = 328 Score = 116 bits (291), Expect = 4e-26 Identities = 56/95 (58%), Positives = 65/95 (68%) Frame = -2 Query: 564 CGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSL 385 CGGIK LLS S F+E+WV+IG PAK KV+ + PF + CT EKEAVN SL Sbjct: 222 CGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASL 281 Query: 384 QNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 280 NLLTYPFV+EG+ N TL L GG+YDFV G FE W Sbjct: 282 GNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELW 316
>CAHC_SPIOL (P16016) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 319 Score = 115 bits (289), Expect = 7e-26 Identities = 55/95 (57%), Positives = 66/95 (69%) Frame = -2 Query: 564 CGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSL 385 CGGIK L+S D + F+EDWV+I PAK KV E + F +QCT EKEAVNVSL Sbjct: 213 CGGIKGLMSFPDAGPTTTDFIEDWVKICLPAKHKVLAEHGNATFAEQCTHCEKEAVNVSL 272 Query: 384 QNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 280 NLLTYPFV++G+ TL L GG+YDFV+G FE W Sbjct: 273 GNLLTYPFVRDGLVKKTLALQGGYYDFVNGSFELW 307
>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)| Length = 272 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/91 (30%), Positives = 44/91 (48%) Frame = -2 Query: 564 CGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSL 385 CG +K LL L +D V DW++ ++ V + DD +L E V + Sbjct: 101 CGAMKGLLKLNQLQED-MPLVYDWLQHAQATRRLVLDNYSGYETDDLVEILVAENVLTQI 159 Query: 384 QNLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 292 +NL TYP V+ + G L++ G Y+ SG+ Sbjct: 160 ENLKTYPIVRSRLFQGKLQIFGWIYEVESGE 190
>CYNT_HELPJ (Q9ZN54) Carbonic anhydrase (EC 4.2.1.1)| Length = 221 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = -2 Query: 507 FVEDWVRIGFPAKKKVQTECA-SMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTL 331 ++ +W++ P K++++ S F + + E+ + L NLL+Y F++E V N L Sbjct: 122 YIANWIQFLEPIKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQERVINNEL 181 Query: 330 KLVGGHYDFVSGK 292 K+ G HY +G+ Sbjct: 182 KIFGWHYIIETGR 194
>CYNT_HELPY (O24855) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 221 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 507 FVEDWVRIGFPAKKKVQTECA-SMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTL 331 ++ +W++ P K++++ S F + + E+ + L NLL+Y F++E + L Sbjct: 122 YIANWIQFLEPVKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASKNEL 181 Query: 330 KLVGGHYDFVSGK 292 K+ G HY +G+ Sbjct: 182 KIFGWHYIIETGR 194
>ACCD_PICAB (O47039) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 319 Score = 34.7 bits (78), Expect = 0.19 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = +1 Query: 193 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 372 AL+ + D+ L+YV + S TGG + F + GD ++ G ++D+ +G Sbjct: 220 ALYIPQKDNRLLYVSILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKIVIDQTLG 276 Query: 373 QEVLE 387 Q+V+E Sbjct: 277 QKVIE 281
>ACCD_PINTH (P52769) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 321 Score = 34.3 bits (77), Expect = 0.25 Identities = 17/65 (26%), Positives = 34/65 (52%) Frame = +1 Query: 193 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 372 AL+ H+ + L+Y+ + S TGG + F + GD ++ G ++++ +G Sbjct: 220 ALYIHQKEKKLLYISILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKRVIEQTLG 276 Query: 373 QEVLE 387 Q+V+E Sbjct: 277 QKVIE 281
>CYNT_ECOLI (P0ABE9) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 33.1 bits (74), Expect = 0.56 Identities = 25/96 (26%), Positives = 40/96 (41%) Frame = -2 Query: 564 CGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSL 385 CG + A+ S + D V W+R A+ + S + + +E V L Sbjct: 101 CGAMTAIASCQ--CMDHMPAVSHWLRYADSARVVNEARPHS-DLPSKAAAMVRENVIAQL 157 Query: 384 QNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWE 277 NL T+P V+ + G + L G YD SG ++ Sbjct: 158 ANLQTHPSVRLALEEGRIALHGWVYDIESGSIAAFD 193
>CYNT_ECO57 (P0ABF0) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 33.1 bits (74), Expect = 0.56 Identities = 25/96 (26%), Positives = 40/96 (41%) Frame = -2 Query: 564 CGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSL 385 CG + A+ S + D V W+R A+ + S + + +E V L Sbjct: 101 CGAMTAIASCQ--CMDHMPAVSHWLRYADSARVVNEARPHS-DLPSKAAAMVRENVIAQL 157 Query: 384 QNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWE 277 NL T+P V+ + G + L G YD SG ++ Sbjct: 158 ANLQTHPSVRLALEEGRIALHGWVYDIESGSIAAFD 193
>PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 426 Score = 30.0 bits (66), Expect = 4.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 208 DVNAMPWECVPVIVQYWMPDGPM*ICHKQ 122 D A+PW +P I + PDGP+ I H + Sbjct: 154 DAPAVPWSTLPEIFRELSPDGPLTIFHPE 182
>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III| Length = 902 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Frame = +2 Query: 320 PTSLRVPLVTPSLTNG*VKRFWRDTLTA----SFSRTVHWSSKGMEAHSVCT 463 P L++P +T ++ +++W + LTA S +RT +W SK + H + T Sbjct: 390 PEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLPT 441
>EF2_METKA (Q8TXJ4) Elongation factor 2 (EF-2) [Contains: Mka fusA intein]| Length = 1257 Score = 30.0 bits (66), Expect = 4.8 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 20/98 (20%) Frame = +1 Query: 199 HSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHT-------LL 357 H+ ++ +++ +L G ++ ELAGD++V+ DE+E G T ++ Sbjct: 545 HNFAAEGFVVHNTTLSDQLLAGAGMISE--ELAGDQLVLDFDEMEQERGITIDAANVSMV 602 Query: 358 DERVGQEVL------EGHVD-------GLLLQDGALVI 432 E G+E L GHVD + DGA+V+ Sbjct: 603 HEYEGEEYLINLIDTPGHVDFSGDVTRAMRAVDGAIVV 640
>I18BP_MOUSE (Q9Z0M9) Interleukin-18-binding protein precursor (IL-18BP)| (Interferon gamma-inducing factor-binding protein) Length = 191 Score = 29.6 bits (65), Expect = 6.2 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -3 Query: 218 SSDRCECNAMGVRTRYCPVLDAGWPDVNLP*AIEPFFLHHFLTRNCTA 75 S D C + V T+ P LD WP+ +P L+ LT +CTA Sbjct: 41 SKDPCSSWSPAVPTKQYPALDVIWPEKEVP-------LNGTLTLSCTA 81
>LPSBP_PERAM (P26305) Hemolymph lipopolysaccharide-binding protein precursor| (LPS-binding protein) (LPS-BP) Length = 256 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -2 Query: 417 VLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFET 283 ++ E + LQNL + EG TN +G H FV G+F T Sbjct: 157 IINSEDESKVLQNLFSKVTKTEGATNNDYIFIGIHDRFVEGEFIT 201
>ACCD_CHLVU (P56293) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 411 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +1 Query: 193 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 372 ALH H++ L+Y+ + S TGG + F + GD + L G G ++++ + Sbjct: 192 ALHIHQNCAKLLYISVLTSPTTGG---VTASFAMLGDLLFAEPKALIGFAGRRVIEQTLQ 248 Query: 373 QEV 381 +++ Sbjct: 249 EQL 251
>LPQT_MYCTU (P96384) Putative lipoprotein lpqT precursor| Length = 226 Score = 29.3 bits (64), Expect = 8.1 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -2 Query: 327 LVGGHYDFVSGKFETWEQ*IFPTG*LRHIQTYIYQDIVRSM 205 ++ G YD + TW + +FPTG Q Y+ Q + S+ Sbjct: 163 MIQGSYDLHGRRLHTWNRIVFPTGAPPAKQRYLVQLTITSL 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,403,600 Number of Sequences: 219361 Number of extensions: 1670557 Number of successful extensions: 5325 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 5143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5323 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
